Wall clock time and date at job start Sat Apr 11 2020 06:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 119.99873 * 2 1 4 4 H 1.48497 * 109.47200 * 239.99905 * 3 2 1 5 5 H 1.48501 * 109.47281 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47211 * 119.99842 * 3 2 1 7 7 C 1.37873 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00134 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00283 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47061 * 179.97438 * 9 7 2 11 11 C 1.34964 * 125.97154 * 125.00273 * 10 9 7 12 12 C 1.35251 * 107.86304 * 179.97438 * 11 10 9 13 13 C 1.40430 * 107.86093 * 0.26438 * 12 11 10 14 14 N 1.39987 * 125.97440 * 179.70447 * 13 12 11 15 15 S 1.65606 * 119.99711 * 179.97438 * 14 13 12 16 16 O 1.42100 * 106.39618 * 178.53758 * 15 14 13 17 17 O 1.42100 * 106.40065 * 311.45455 * 15 14 13 18 18 C 1.76202 * 107.21759 * 64.99690 * 15 14 13 19 19 C 1.38243 * 119.98484 * 269.72388 * 18 15 14 20 20 C 1.38214 * 120.00871 * 179.72870 * 19 18 15 21 21 C 1.38357 * 119.98787 * 0.54956 * 20 19 18 22 22 Cl 1.73601 * 120.01326 * 179.70748 * 21 20 19 23 23 C 1.38353 * 119.97176 * 359.71932 * 21 20 19 24 24 C 1.38216 * 119.98788 * 0.02562 * 23 21 20 25 25 N 1.31222 * 108.04878 * 359.55108 * 13 12 11 26 26 H 0.96993 * 120.00234 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47375 * 59.99528 * 9 7 2 28 28 H 1.09000 * 109.47059 * 299.99597 * 9 7 2 29 29 H 1.08003 * 126.07111 * 359.95122 * 11 10 9 30 30 H 1.08002 * 126.06603 * 179.97438 * 12 11 10 31 31 H 0.97000 * 119.99877 * 359.97438 * 14 13 12 32 32 H 1.07996 * 119.99463 * 0.02562 * 19 18 15 33 33 H 1.07995 * 120.00430 * 180.26989 * 20 19 18 34 34 H 1.08002 * 120.00493 * 179.97438 * 23 21 20 35 35 H 1.08003 * 119.98979 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.2421 -4.6223 0.8952 12 6 3.2604 -5.4430 0.5506 13 6 3.8723 -4.9118 -0.5964 14 7 4.9713 -5.4580 -1.2698 15 16 5.5759 -4.7048 -2.6151 16 8 6.6920 -5.4755 -3.0388 17 8 4.4624 -4.4241 -3.4522 18 6 6.2148 -3.1464 -2.0976 19 6 5.3988 -2.0305 -2.0981 20 6 5.8979 -0.8090 -1.6869 21 6 7.2176 -0.7008 -1.2856 22 17 7.8472 0.8347 -0.7763 23 6 8.0352 -1.8169 -1.2906 24 6 7.5335 -3.0390 -1.6970 25 7 3.2317 -3.8158 -0.9284 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 1.5782 -4.7518 1.7373 30 1 3.5540 -6.3441 1.0685 31 1 5.3788 -6.2775 -0.9484 32 1 4.3699 -2.1143 -2.4153 33 1 5.2592 0.0618 -1.6832 34 1 9.0655 -1.7330 -0.9779 35 1 8.1719 -3.9102 -1.7013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117741014.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:33 Heat of formation + Delta-G solvation = 27.980337 kcal Electronic energy + Delta-G solvation = -25149.068715 eV Core-core repulsion = 21302.023521 eV Total energy + Delta-G solvation = -3847.045194 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.039 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.58640 -39.23340 -37.18508 -36.61754 -35.80042 -35.28585 -33.35352 -31.16737 -31.04538 -30.84261 -29.51464 -26.73762 -23.27454 -23.23143 -22.98579 -20.95949 -20.71181 -19.07159 -18.06997 -17.37662 -16.92513 -16.67768 -16.40748 -15.86141 -15.29590 -14.79065 -14.58346 -14.41905 -14.19406 -13.68418 -13.60530 -13.17100 -12.95106 -12.80123 -12.57527 -12.08505 -12.04311 -11.96247 -11.87732 -11.78296 -11.70529 -11.32281 -11.04351 -10.93726 -10.85993 -10.71154 -10.34004 -10.05206 -9.66820 -9.16366 -9.10707 -8.70910 -8.43203 -7.73007 -6.32222 -4.37614 0.29186 0.68405 1.23139 1.92287 2.58876 2.69104 3.17676 3.23098 3.23258 3.24671 3.33644 3.54276 3.84536 4.23099 4.36904 4.69472 4.78999 4.93780 5.06078 5.19329 5.28812 5.39399 5.51802 5.79175 5.93265 5.97873 6.06126 6.10818 6.17029 6.22015 6.57896 6.69182 6.90947 7.03538 7.25109 7.59716 7.77282 7.86731 8.36711 8.69271 9.28154 10.76780 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.008062 B = 0.006503 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3472.223302 B = 4304.510835 C = 7007.794784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.070 0.930 9 C 0.256 3.744 10 N -0.311 5.311 11 C 0.070 3.930 12 C -0.304 4.304 13 C 0.275 3.725 14 N -1.013 6.013 15 S 2.696 3.304 16 O -0.960 6.960 17 O -0.926 6.926 18 C -0.675 4.675 19 C 0.030 3.970 20 C -0.130 4.130 21 C 0.020 3.980 22 Cl -0.065 7.065 23 C -0.143 4.143 24 C -0.011 4.011 25 N -0.305 5.305 26 H 0.269 0.731 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.171 0.829 30 H 0.140 0.860 31 H 0.431 0.569 32 H 0.166 0.834 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.496 -6.919 0.577 14.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.088 0.912 9 C 0.139 3.861 10 N -0.092 5.092 11 C -0.082 4.082 12 C -0.338 4.338 13 C 0.020 3.980 14 N -0.767 5.767 15 S 2.786 3.214 16 O -0.950 6.950 17 O -0.916 6.916 18 C -0.762 4.762 19 C 0.010 3.990 20 C -0.149 4.149 21 C -0.007 4.007 22 Cl -0.036 7.036 23 C -0.162 4.162 24 C -0.031 4.031 25 N -0.136 5.136 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.189 0.811 30 H 0.158 0.842 31 H 0.267 0.733 32 H 0.183 0.817 33 H 0.162 0.838 34 H 0.157 0.843 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.152 -5.742 -1.149 13.489 hybrid contribution 0.817 0.650 1.511 1.836 sum 12.968 -5.092 0.362 13.937 Atomic orbital electron populations 1.69891 1.06010 1.27822 1.49277 1.24892 0.94917 0.99348 0.94549 0.86538 0.79665 0.82207 0.79098 1.19649 1.20932 1.19888 1.21169 0.93927 0.89225 1.52624 0.91209 1.19831 0.85552 0.81118 0.99590 1.49099 1.23010 1.19624 1.17450 1.22450 0.99568 0.89763 0.96380 1.20839 1.03983 1.06527 1.02449 1.18666 0.90503 0.94732 0.94140 1.52560 1.38832 1.37199 1.48117 1.01954 0.73431 0.73385 0.72610 1.93592 1.52933 1.69415 1.79109 1.93650 1.51178 1.84533 1.62233 1.30856 1.04064 1.21785 1.19544 1.21245 0.99930 0.89742 0.88064 1.21352 0.93592 0.99759 1.00204 1.21326 0.94451 0.87214 0.97740 1.98385 1.86931 1.29176 1.89088 1.21052 1.00374 0.91430 1.03387 1.20818 0.92951 0.97875 0.91456 1.77346 1.03988 1.16486 1.15817 0.92171 0.93307 0.92365 0.81136 0.84172 0.73278 0.81652 0.83762 0.84254 0.83630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.10 13.29 55.43 0.74 -23.36 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.53 -13.59 9.24 -34.44 -0.32 -13.90 16 8 H 0.07 1.81 7.81 -52.48 -0.41 1.40 16 9 C 0.26 5.98 6.26 -5.19 -0.03 5.95 16 10 N -0.31 -6.44 3.67 -62.56 -0.23 -6.67 16 11 C 0.07 1.16 11.44 -17.24 -0.20 0.97 16 12 C -0.30 -4.69 10.83 -39.82 -0.43 -5.12 16 13 C 0.28 4.76 7.72 -154.55 -1.19 3.57 16 14 N -1.01 -14.06 5.91 31.39 0.19 -13.87 16 15 S 2.70 41.45 5.50 -107.50 -0.59 40.86 16 16 O -0.96 -14.73 17.28 -57.17 -0.99 -15.71 16 17 O -0.93 -17.65 16.49 -57.17 -0.94 -18.60 16 18 C -0.67 -10.37 5.91 -39.58 -0.23 -10.60 16 19 C 0.03 0.51 8.71 -39.59 -0.34 0.17 16 20 C -0.13 -2.13 9.83 -39.55 -0.39 -2.52 16 21 C 0.02 0.29 6.32 -39.50 -0.25 0.04 16 22 Cl -0.06 -0.86 28.96 -51.86 -1.50 -2.36 16 23 C -0.14 -1.80 9.83 -39.55 -0.39 -2.19 16 24 C -0.01 -0.15 9.52 -39.59 -0.38 -0.52 16 25 N -0.31 -6.30 9.90 31.41 0.31 -5.99 16 26 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 27 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 29 H 0.17 2.21 8.06 -52.48 -0.42 1.79 16 30 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.43 4.24 8.96 -34.48 -0.31 3.93 16 32 H 0.17 3.17 6.89 -52.49 -0.36 2.81 16 33 H 0.14 2.40 8.06 -52.49 -0.42 1.98 16 34 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.15 1.48 7.62 -52.48 -0.40 1.08 16 LS Contribution 340.92 15.07 5.14 5.14 Total: -1.00 -31.40 340.92 -10.30 -41.70 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -3.15 Total: 6.20 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -4.25 Total: -22.55 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 1.00 Total: -49.90 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -1.93 Total: -34.31 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 41.45 SS G_CDS: -0.59 Total: 40.86 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.40 -10.30 -41.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117741014.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.680 kcal (2) G-P(sol) polarization free energy of solvation -31.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds