Wall clock time and date at job start Sat Apr 11 2020 06:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 119.99873 * 2 1 4 4 H 1.48497 * 109.47200 * 239.99905 * 3 2 1 5 5 H 1.48501 * 109.47281 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47211 * 119.99842 * 3 2 1 7 7 C 1.37873 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00134 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00283 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47061 * 179.97438 * 9 7 2 11 11 C 1.34964 * 125.97154 * 125.00273 * 10 9 7 12 12 C 1.35251 * 107.86304 * 179.97438 * 11 10 9 13 13 C 1.40430 * 107.86093 * 0.26438 * 12 11 10 14 14 N 1.39987 * 125.97440 * 179.70447 * 13 12 11 15 15 S 1.65606 * 119.99711 * 179.97438 * 14 13 12 16 16 O 1.42100 * 106.39618 * 178.53758 * 15 14 13 17 17 O 1.42100 * 106.40065 * 311.45455 * 15 14 13 18 18 C 1.76202 * 107.21759 * 64.99690 * 15 14 13 19 19 C 1.38243 * 119.98484 * 269.72388 * 18 15 14 20 20 C 1.38214 * 120.00871 * 179.72870 * 19 18 15 21 21 C 1.38357 * 119.98787 * 0.54956 * 20 19 18 22 22 Cl 1.73601 * 120.01326 * 179.70748 * 21 20 19 23 23 C 1.38353 * 119.97176 * 359.71932 * 21 20 19 24 24 C 1.38216 * 119.98788 * 0.02562 * 23 21 20 25 25 N 1.31222 * 108.04878 * 359.55108 * 13 12 11 26 26 H 0.96993 * 120.00234 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47375 * 59.99528 * 9 7 2 28 28 H 1.09000 * 109.47059 * 299.99597 * 9 7 2 29 29 H 1.08003 * 126.07111 * 359.95122 * 11 10 9 30 30 H 1.08002 * 126.06603 * 179.97438 * 12 11 10 31 31 H 0.97000 * 119.99877 * 359.97438 * 14 13 12 32 32 H 1.07996 * 119.99463 * 0.02562 * 19 18 15 33 33 H 1.07995 * 120.00430 * 180.26989 * 20 19 18 34 34 H 1.08002 * 120.00493 * 179.97438 * 23 21 20 35 35 H 1.08003 * 119.98979 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.2421 -4.6223 0.8952 12 6 3.2604 -5.4430 0.5506 13 6 3.8723 -4.9118 -0.5964 14 7 4.9713 -5.4580 -1.2698 15 16 5.5759 -4.7048 -2.6151 16 8 6.6920 -5.4755 -3.0388 17 8 4.4624 -4.4241 -3.4522 18 6 6.2148 -3.1464 -2.0976 19 6 5.3988 -2.0305 -2.0981 20 6 5.8979 -0.8090 -1.6869 21 6 7.2176 -0.7008 -1.2856 22 17 7.8472 0.8347 -0.7763 23 6 8.0352 -1.8169 -1.2906 24 6 7.5335 -3.0390 -1.6970 25 7 3.2317 -3.8158 -0.9284 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 1.5782 -4.7518 1.7373 30 1 3.5540 -6.3441 1.0685 31 1 5.3788 -6.2775 -0.9484 32 1 4.3699 -2.1143 -2.4153 33 1 5.2592 0.0618 -1.6832 34 1 9.0655 -1.7330 -0.9779 35 1 8.1719 -3.9102 -1.7013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117741014.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:33 Heat of formation + Delta-G solvation = 7.666210 kcal Electronic energy + Delta-G solvation = -25149.949602 eV Core-core repulsion = 21302.023521 eV Total energy + Delta-G solvation = -3847.926080 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.039 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.97087 -40.36902 -38.47816 -37.71043 -37.12414 -36.65614 -35.19635 -32.49285 -32.30694 -32.19348 -30.88229 -28.47892 -25.02098 -24.40206 -24.13204 -22.34010 -22.08664 -20.32077 -19.28414 -18.66972 -18.60445 -18.20669 -17.58225 -17.19163 -16.78233 -16.26110 -15.83571 -15.80790 -15.69256 -14.81863 -14.73184 -14.52308 -14.39837 -14.26019 -13.97915 -13.75004 -13.37569 -13.27624 -13.19737 -13.00918 -12.91833 -12.85702 -12.72305 -12.50332 -12.24050 -12.04955 -11.99995 -11.60268 -11.32451 -10.69507 -10.30940 -10.25042 -9.83005 -9.15962 -8.30826 -6.42206 -0.92087 -0.49733 0.09265 0.81217 1.20840 1.36361 1.37087 1.40497 1.45683 1.95541 2.05617 2.25102 2.34631 2.62202 3.02436 3.16555 3.60171 3.68046 3.71643 4.06750 4.09464 4.21633 4.39984 4.61729 4.68021 4.81722 4.86705 4.90299 4.96140 4.99891 5.01624 5.10233 5.52870 5.60462 5.71187 5.90608 6.01013 6.32381 6.69500 6.99083 7.26955 8.77067 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.008062 B = 0.006503 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3472.223302 B = 4304.510835 C = 7007.794784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.024 3.976 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.538 4.538 8 H 0.060 0.940 9 C 0.271 3.729 10 N -0.342 5.342 11 C 0.066 3.934 12 C -0.290 4.290 13 C 0.274 3.726 14 N -0.997 5.997 15 S 2.714 3.286 16 O -0.956 6.956 17 O -0.970 6.970 18 C -0.681 4.681 19 C 0.008 3.992 20 C -0.150 4.150 21 C 0.016 3.984 22 Cl -0.054 7.054 23 C -0.131 4.131 24 C -0.004 4.004 25 N -0.350 5.350 26 H 0.270 0.730 27 H 0.018 0.982 28 H 0.062 0.938 29 H 0.205 0.795 30 H 0.184 0.816 31 H 0.450 0.550 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.179 0.821 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.276 -8.223 2.012 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.177 4.177 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.576 4.576 8 H 0.078 0.922 9 C 0.152 3.848 10 N -0.123 5.123 11 C -0.083 4.083 12 C -0.323 4.323 13 C 0.017 3.983 14 N -0.754 5.754 15 S 2.804 3.196 16 O -0.946 6.946 17 O -0.959 6.959 18 C -0.769 4.769 19 C -0.012 4.012 20 C -0.170 4.170 21 C -0.011 4.011 22 Cl -0.024 7.024 23 C -0.150 4.150 24 C -0.023 4.023 25 N -0.181 5.181 26 H 0.079 0.921 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.222 0.778 30 H 0.202 0.798 31 H 0.291 0.709 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.196 0.804 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 14.954 -7.098 0.294 16.556 hybrid contribution 0.057 0.955 1.072 1.437 sum 15.011 -6.143 1.366 16.277 Atomic orbital electron populations 1.69975 1.07118 1.28501 1.50399 1.25576 0.95598 1.02162 0.94326 0.85750 0.78765 0.78941 0.79320 1.19250 1.20375 1.19248 1.21381 0.93632 0.90613 1.51953 0.92196 1.19334 0.85705 0.81641 0.98102 1.48787 1.23716 1.20495 1.19324 1.23194 1.00277 0.88434 0.96370 1.21322 1.02507 1.07177 1.01268 1.19008 0.90625 0.94031 0.94588 1.52320 1.37912 1.37837 1.47359 1.01270 0.72721 0.73194 0.72367 1.93587 1.52446 1.69353 1.79256 1.93604 1.53054 1.85172 1.64102 1.30779 1.05142 1.20717 1.20265 1.20973 0.99122 0.91084 0.89981 1.21269 0.94827 0.99081 1.01777 1.21440 0.93853 0.88444 0.97376 1.98388 1.86525 1.28659 1.88875 1.21501 1.01715 0.90249 1.01519 1.21298 0.92001 0.99388 0.89627 1.77309 1.05048 1.18663 1.17045 0.92091 0.96449 0.92047 0.77788 0.79834 0.70884 0.84774 0.85228 0.80395 0.80035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.12 13.29 21.45 0.28 -50.84 16 2 C 0.02 1.27 5.46 84.65 0.46 1.73 16 3 Si 0.95 42.28 29.54 68.60 2.03 44.31 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.54 -28.54 9.24 25.60 0.24 -28.30 16 8 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 9 C 0.27 13.19 6.26 85.63 0.54 13.72 16 10 N -0.34 -14.38 3.67 -351.83 -1.29 -15.67 16 11 C 0.07 2.10 11.44 83.52 0.96 3.05 16 12 C -0.29 -8.11 10.83 22.11 0.24 -7.87 16 13 C 0.27 9.16 7.72 133.39 1.03 10.19 16 14 N -1.00 -25.77 5.91 -54.61 -0.32 -26.09 16 15 S 2.71 81.21 5.50 -56.49 -0.31 80.90 16 16 O -0.96 -27.16 17.28 -128.00 -2.21 -29.37 16 17 O -0.97 -38.07 16.49 -128.00 -2.11 -40.18 16 18 C -0.68 -20.41 5.91 22.27 0.13 -20.28 16 19 C 0.01 0.29 8.71 22.27 0.19 0.49 16 20 C -0.15 -5.06 9.83 22.29 0.22 -4.84 16 21 C 0.02 0.44 6.32 22.33 0.14 0.58 16 22 Cl -0.05 -1.34 28.96 -2.72 -0.08 -1.42 16 23 C -0.13 -2.87 9.83 22.29 0.22 -2.65 16 24 C 0.00 -0.09 9.52 22.26 0.21 0.12 16 25 N -0.35 -14.73 9.90 -54.55 -0.54 -15.27 16 26 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 27 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 2.89 8.07 -2.39 -0.02 2.87 16 29 H 0.21 4.77 8.06 -2.91 -0.02 4.75 16 30 H 0.18 3.43 8.06 -2.91 -0.02 3.41 16 31 H 0.45 7.44 8.96 -96.74 -0.87 6.57 16 32 H 0.13 5.62 6.89 -2.91 -0.02 5.60 16 33 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 34 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 35 H 0.18 2.82 7.62 -2.91 -0.02 2.80 16 Total: -1.00 -70.56 340.92 0.31 -70.25 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.29 Total: 17.43 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: 4.58 Total: -34.05 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -1.87 Total: -107.87 kcal Atomic # 8 Polarization: -65.23 SS G_CDS: -4.32 Total: -69.55 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: 81.21 SS G_CDS: -0.31 Total: 80.90 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -70.56 0.31 -70.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117741014.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.916 kcal (2) G-P(sol) polarization free energy of solvation -70.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds