Wall clock time and date at job start Sat Apr 11 2020 06:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 117.00444 * 2 1 4 4 O 1.20827 * 119.99448 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00481 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47436 * 180.02562 * 5 3 2 7 7 C 1.36875 * 119.99820 * 85.64872 * 6 5 3 8 8 H 1.08002 * 120.00061 * 59.33321 * 7 6 5 9 9 C 1.39044 * 119.99864 * 239.60410 * 7 6 5 10 10 N 1.31370 * 119.99819 * 145.15326 * 9 7 6 11 11 Si 1.86794 * 120.00043 * 325.14668 * 9 7 6 12 12 H 1.48504 * 109.47062 * 27.17311 * 11 9 7 13 13 H 1.48506 * 109.46994 * 147.16967 * 11 9 7 14 14 H 1.48495 * 109.47512 * 267.17129 * 11 9 7 15 15 C 1.34774 * 119.99994 * 265.65375 * 6 5 3 16 16 O 1.21594 * 120.00075 * 181.08804 * 15 6 5 17 17 C 1.47677 * 119.99776 * 1.08158 * 15 6 5 18 18 C 1.39679 * 120.15942 * 52.14640 * 17 15 6 19 19 C 1.37894 * 119.85751 * 180.02562 * 18 17 15 20 20 C 1.38424 * 120.17683 * 359.97438 * 19 18 17 21 21 C 1.38305 * 120.32529 * 359.97438 * 20 19 18 22 22 C 1.38094 * 120.13814 * 359.72486 * 21 20 19 23 23 Br 1.89098 * 120.09057 * 180.27420 * 22 21 20 24 24 H 1.08990 * 109.47029 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46922 * 300.00126 * 1 2 3 26 26 H 1.09000 * 109.46654 * 59.99418 * 1 2 3 27 27 H 1.08998 * 109.46800 * 59.99783 * 5 3 2 28 28 H 1.09004 * 109.46542 * 300.00222 * 5 3 2 29 29 H 0.96994 * 119.99895 * 180.02562 * 10 9 7 30 30 H 1.08003 * 120.07372 * 359.97438 * 18 17 15 31 31 H 1.07997 * 119.90798 * 179.97438 * 19 18 17 32 32 H 1.08005 * 119.83701 * 179.97438 * 20 19 18 33 33 H 1.07996 * 119.92835 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9819 2.6797 0.0002 7 6 4.0902 3.3607 1.1825 8 1 4.7678 3.0106 1.9472 9 6 3.3237 4.4999 1.4014 10 7 2.8716 4.7660 2.6058 11 14 2.9370 5.6522 -0.0171 12 1 2.9474 4.8895 -1.2913 13 1 1.5958 6.2561 0.1873 14 1 3.9601 6.7268 -0.0751 15 6 4.2573 3.3016 -1.1634 16 8 4.6212 4.4618 -1.1614 17 6 4.1173 2.5738 -2.4407 18 6 2.9274 1.9071 -2.7417 19 6 2.8035 1.2290 -3.9360 20 6 3.8546 1.2082 -4.8365 21 6 5.0358 1.8667 -4.5466 22 6 5.1719 2.5550 -3.3572 23 35 6.7846 3.4614 -2.9655 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 3.9557 0.7809 -0.8908 28 1 3.9564 0.7805 0.8892 29 1 2.3366 5.5606 2.7584 30 1 2.1063 1.9218 -2.0402 31 1 1.8841 0.7129 -4.1694 32 1 3.7518 0.6750 -5.7702 33 1 5.8518 1.8459 -5.2536 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120567607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:37 Heat of formation + Delta-G solvation = -36.398944 kcal Electronic energy + Delta-G solvation = -22606.310305 eV Core-core repulsion = 19067.000108 eV Total energy + Delta-G solvation = -3539.310197 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.010 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.47620 -39.41422 -38.00812 -36.09118 -34.60468 -32.39613 -32.13259 -30.98146 -29.04237 -28.75226 -26.55296 -25.16431 -22.83153 -22.25756 -21.00553 -19.59802 -17.83312 -17.28928 -16.84722 -16.44986 -16.08886 -15.48324 -15.36674 -15.08309 -14.62864 -14.03101 -13.61286 -13.48875 -13.24963 -12.97112 -12.90861 -12.52900 -12.32740 -11.80501 -11.57251 -11.53356 -11.13697 -10.80788 -10.63002 -10.40588 -10.39413 -9.98185 -9.88177 -9.39405 -8.90776 -8.82789 -8.53597 -8.27177 -7.21129 -6.34924 -4.16988 1.04665 1.23803 1.89970 2.73559 2.91595 3.35830 3.61500 3.66400 3.82887 4.04925 4.36489 4.61561 4.82808 4.88331 4.98070 5.14938 5.26980 5.30938 5.37987 5.40862 5.44336 5.55011 5.65744 5.73362 5.89439 5.91381 6.19289 6.30672 6.40172 6.76026 6.79403 7.64704 7.99959 8.28208 8.58440 8.71857 9.30357 9.63553 10.61473 Molecular weight = 341.01amu Principal moments of inertia in cm(-1) A = 0.011986 B = 0.007480 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.402256 B = 3742.210164 C = 5314.174238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.369 6.369 3 C 0.436 3.564 4 O -0.479 6.479 5 C 0.114 3.886 6 N -0.428 5.428 7 C -0.377 4.377 8 H 0.095 0.905 9 C 0.100 3.900 10 N -0.828 5.828 11 Si 0.936 3.064 12 H -0.247 1.247 13 H -0.334 1.334 14 H -0.290 1.290 15 C 0.495 3.505 16 O -0.499 6.499 17 C -0.076 4.076 18 C -0.105 4.105 19 C -0.108 4.108 20 C -0.112 4.112 21 C -0.097 4.097 22 C -0.059 4.059 23 Br -0.032 7.032 24 H 0.094 0.906 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.274 0.726 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.228 -11.875 -13.113 17.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.286 6.286 3 C 0.276 3.724 4 O -0.363 6.363 5 C -0.012 4.012 6 N -0.150 5.150 7 C -0.501 4.501 8 H 0.113 0.887 9 C -0.114 4.114 10 N -0.458 5.458 11 Si 0.774 3.226 12 H -0.174 1.174 13 H -0.268 1.268 14 H -0.217 1.217 15 C 0.286 3.714 16 O -0.380 6.380 17 C -0.081 4.081 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.131 4.131 21 C -0.117 4.117 22 C -0.140 4.140 23 Br 0.054 6.946 24 H 0.113 0.887 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.134 0.866 29 H 0.083 0.917 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.735 -10.524 -12.737 16.613 hybrid contribution -1.011 0.513 -0.540 1.256 sum 0.724 -10.010 -13.278 16.644 Atomic orbital electron populations 1.23150 0.77590 1.02842 1.02367 1.86541 1.22600 1.34541 1.84947 1.25046 0.93341 0.81346 0.72656 1.90710 1.66484 1.36070 1.43048 1.21525 0.86126 0.88544 1.05019 1.42903 1.57988 1.08642 1.05441 1.18423 1.27280 1.12866 0.91576 0.88714 1.25581 0.90653 0.98300 0.96909 1.70012 1.26565 1.24813 1.24369 0.85865 0.73287 0.79947 0.83551 1.17446 1.26817 1.21725 1.18100 0.82664 0.87468 0.83191 1.90167 1.46939 1.15966 1.84928 1.20320 0.93704 0.97885 0.96169 1.21642 0.96835 0.96039 0.97879 1.21171 0.99043 0.98833 0.93602 1.21193 0.92858 0.99463 0.99588 1.21037 0.98595 0.96922 0.95110 1.21878 0.93751 1.01425 0.96905 1.96736 1.26068 1.76565 1.95227 0.88708 0.92027 0.92469 0.88208 0.86584 0.91683 0.85004 0.85315 0.85144 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.78 10.57 -39.26 -0.41 -6.19 16 3 C 0.44 8.40 5.79 36.01 0.21 8.60 16 4 O -0.48 -11.12 15.09 -18.75 -0.28 -11.40 16 5 C 0.11 2.15 5.49 -5.19 -0.03 2.12 16 6 N -0.43 -10.29 1.97 -117.23 -0.23 -10.53 16 7 C -0.38 -10.55 9.39 -15.00 -0.14 -10.69 16 8 H 0.10 2.73 8.06 -52.49 -0.42 2.31 16 9 C 0.10 2.98 5.49 -17.45 -0.10 2.88 16 10 N -0.83 -24.93 13.95 55.50 0.77 -24.15 16 11 Si 0.94 26.80 24.91 -169.99 -4.23 22.56 16 12 H -0.25 -7.05 4.49 55.32 0.25 -6.80 16 13 H -0.33 -9.66 7.11 56.52 0.40 -9.25 16 14 H -0.29 -8.51 7.11 56.52 0.40 -8.11 16 15 C 0.50 11.90 4.48 -12.41 -0.06 11.84 16 16 O -0.50 -13.52 9.85 5.28 0.05 -13.47 16 17 C -0.08 -1.48 4.64 -104.95 -0.49 -1.97 16 18 C -0.10 -1.78 7.77 -39.17 -0.30 -2.08 16 19 C -0.11 -1.39 10.03 -39.64 -0.40 -1.78 16 20 C -0.11 -1.28 10.04 -39.49 -0.40 -1.67 16 21 C -0.10 -1.27 9.78 -39.61 -0.39 -1.66 16 22 C -0.06 -1.01 6.25 -39.08 -0.24 -1.25 16 23 Br -0.03 -0.56 31.71 -68.01 -2.16 -2.72 16 24 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 26 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 27 H 0.10 1.59 6.08 -51.93 -0.32 1.28 16 28 H 0.12 1.99 8.07 -51.93 -0.42 1.57 16 29 H 0.27 7.80 8.31 -40.82 -0.34 7.46 16 30 H 0.13 2.43 4.47 -52.48 -0.23 2.19 16 31 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 32 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 33 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 300.04 15.07 4.52 4.52 Total: -1.00 -34.93 300.04 -6.45 -41.38 By element: Atomic # 1 Polarization: -2.63 SS G_CDS: -3.22 Total: -5.85 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -1.26 Total: 5.84 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.54 Total: -34.68 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.65 Total: -31.06 kcal Atomic # 14 Polarization: 26.80 SS G_CDS: -4.23 Total: 22.56 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.16 Total: -2.72 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.93 -6.45 -41.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120567607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.983 kcal (2) G-P(sol) polarization free energy of solvation -34.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds