Wall clock time and date at job start Sat Apr 11 2020 06:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 117.00444 * 2 1 4 4 O 1.20827 * 119.99448 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00481 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47436 * 180.02562 * 5 3 2 7 7 C 1.36875 * 119.99820 * 85.64872 * 6 5 3 8 8 H 1.08002 * 120.00061 * 59.33321 * 7 6 5 9 9 C 1.39044 * 119.99864 * 239.60410 * 7 6 5 10 10 N 1.31370 * 119.99819 * 145.15326 * 9 7 6 11 11 Si 1.86794 * 120.00043 * 325.14668 * 9 7 6 12 12 H 1.48504 * 109.47062 * 27.17311 * 11 9 7 13 13 H 1.48506 * 109.46994 * 147.16967 * 11 9 7 14 14 H 1.48495 * 109.47512 * 267.17129 * 11 9 7 15 15 C 1.34774 * 119.99994 * 265.65375 * 6 5 3 16 16 O 1.21594 * 120.00075 * 181.08804 * 15 6 5 17 17 C 1.47677 * 119.99776 * 1.08158 * 15 6 5 18 18 C 1.39679 * 120.15942 * 52.14640 * 17 15 6 19 19 C 1.37894 * 119.85751 * 180.02562 * 18 17 15 20 20 C 1.38424 * 120.17683 * 359.97438 * 19 18 17 21 21 C 1.38305 * 120.32529 * 359.97438 * 20 19 18 22 22 C 1.38094 * 120.13814 * 359.72486 * 21 20 19 23 23 Br 1.89098 * 120.09057 * 180.27420 * 22 21 20 24 24 H 1.08990 * 109.47029 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46922 * 300.00126 * 1 2 3 26 26 H 1.09000 * 109.46654 * 59.99418 * 1 2 3 27 27 H 1.08998 * 109.46800 * 59.99783 * 5 3 2 28 28 H 1.09004 * 109.46542 * 300.00222 * 5 3 2 29 29 H 0.96994 * 119.99895 * 180.02562 * 10 9 7 30 30 H 1.08003 * 120.07372 * 359.97438 * 18 17 15 31 31 H 1.07997 * 119.90798 * 179.97438 * 19 18 17 32 32 H 1.08005 * 119.83701 * 179.97438 * 20 19 18 33 33 H 1.07996 * 119.92835 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9819 2.6797 0.0002 7 6 4.0902 3.3607 1.1825 8 1 4.7678 3.0106 1.9472 9 6 3.3237 4.4999 1.4014 10 7 2.8716 4.7660 2.6058 11 14 2.9370 5.6522 -0.0171 12 1 2.9474 4.8895 -1.2913 13 1 1.5958 6.2561 0.1873 14 1 3.9601 6.7268 -0.0751 15 6 4.2573 3.3016 -1.1634 16 8 4.6212 4.4618 -1.1614 17 6 4.1173 2.5738 -2.4407 18 6 2.9274 1.9071 -2.7417 19 6 2.8035 1.2290 -3.9360 20 6 3.8546 1.2082 -4.8365 21 6 5.0358 1.8667 -4.5466 22 6 5.1719 2.5550 -3.3572 23 35 6.7846 3.4614 -2.9655 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 3.9557 0.7809 -0.8908 28 1 3.9564 0.7805 0.8892 29 1 2.3366 5.5606 2.7584 30 1 2.1063 1.9218 -2.0402 31 1 1.8841 0.7129 -4.1694 32 1 3.7518 0.6750 -5.7702 33 1 5.8518 1.8459 -5.2536 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120567607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:37 Heat of formation + Delta-G solvation = -60.025057 kcal Electronic energy + Delta-G solvation = -22607.334810 eV Core-core repulsion = 19067.000108 eV Total energy + Delta-G solvation = -3540.334702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.010 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.02878 -40.88184 -39.43552 -37.58194 -36.44732 -34.47773 -33.34020 -32.30603 -30.29745 -30.21288 -27.91165 -26.91327 -24.27804 -23.52100 -22.44477 -21.27521 -19.64465 -18.76355 -18.42244 -17.83941 -17.69502 -16.94230 -16.83102 -16.76233 -16.13319 -15.54969 -15.32910 -14.96766 -14.65669 -14.32564 -14.27140 -14.15899 -14.08438 -13.28949 -12.92211 -12.86207 -12.74858 -12.62441 -12.25519 -11.84633 -11.72632 -11.69166 -11.39357 -11.17293 -10.90985 -10.38268 -10.03210 -9.75157 -9.27694 -8.59181 -6.38373 -0.16497 0.12150 0.65450 1.17342 1.25640 1.33585 1.49806 1.67835 2.06195 2.37060 2.50432 2.65632 2.83127 3.62806 3.72461 4.00087 4.02150 4.13506 4.28523 4.30139 4.36940 4.39768 4.42998 4.50492 4.74567 4.79816 5.10536 5.21903 5.32354 5.39727 5.50034 5.75821 5.89374 6.56391 6.74091 6.85206 7.14396 7.66646 8.39154 Molecular weight = 341.01amu Principal moments of inertia in cm(-1) A = 0.011986 B = 0.007480 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.402256 B = 3742.210164 C = 5314.174238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.446 3.554 4 O -0.524 6.524 5 C 0.113 3.887 6 N -0.446 5.446 7 C -0.370 4.370 8 H 0.079 0.921 9 C 0.070 3.930 10 N -0.862 5.862 11 Si 0.970 3.030 12 H -0.248 1.248 13 H -0.348 1.348 14 H -0.311 1.311 15 C 0.498 3.502 16 O -0.543 6.543 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.094 4.094 20 C -0.082 4.082 21 C -0.088 4.088 22 C -0.073 4.073 23 Br -0.052 7.052 24 H 0.141 0.859 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.274 0.726 30 H 0.114 0.886 31 H 0.168 0.832 32 H 0.184 0.816 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.604 -15.508 -16.691 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.288 3.712 4 O -0.413 6.413 5 C -0.012 4.012 6 N -0.167 5.167 7 C -0.495 4.495 8 H 0.097 0.903 9 C -0.141 4.141 10 N -0.494 5.494 11 Si 0.811 3.189 12 H -0.174 1.174 13 H -0.284 1.284 14 H -0.240 1.240 15 C 0.290 3.710 16 O -0.427 6.427 17 C -0.117 4.117 18 C -0.135 4.135 19 C -0.112 4.112 20 C -0.101 4.101 21 C -0.108 4.108 22 C -0.153 4.153 23 Br 0.034 6.966 24 H 0.159 0.841 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.153 0.847 28 H 0.150 0.850 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.185 0.815 32 H 0.201 0.799 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.106 -14.221 -16.324 21.678 hybrid contribution -0.790 1.404 0.373 1.653 sum 0.316 -12.817 -15.951 20.465 Atomic orbital electron populations 1.23526 0.75317 1.05720 1.02003 1.86504 1.24590 1.32081 1.84067 1.24815 0.93279 0.81597 0.71514 1.90706 1.67379 1.37779 1.45396 1.21585 0.86613 0.85513 1.07487 1.43041 1.58848 1.10293 1.04487 1.18322 1.25999 1.12588 0.92624 0.90305 1.25896 0.91546 0.99340 0.97285 1.70034 1.28786 1.25732 1.24884 0.85347 0.71631 0.78666 0.83274 1.17434 1.28353 1.23995 1.18788 0.80356 0.87023 0.84807 1.90071 1.48893 1.18046 1.85727 1.19944 0.96257 1.00637 0.94894 1.21599 0.95273 0.97040 0.99637 1.21600 1.00957 0.97086 0.91579 1.21808 0.90796 0.96953 1.00524 1.21482 1.00385 0.95298 0.93630 1.22056 0.92603 1.02542 0.98121 1.96717 1.26997 1.77311 1.95549 0.84099 0.93474 0.91931 0.84740 0.85024 0.91641 0.86819 0.81464 0.79875 0.81769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.81 16 2 O -0.36 -10.24 10.57 -51.41 -0.54 -10.78 16 3 C 0.45 16.69 5.79 71.24 0.41 17.10 16 4 O -0.52 -24.51 15.09 21.96 0.33 -24.18 16 5 C 0.11 4.15 5.49 85.63 0.47 4.62 16 6 N -0.45 -21.69 1.97 -643.06 -1.27 -22.95 16 7 C -0.37 -21.37 9.39 84.10 0.79 -20.58 16 8 H 0.08 4.73 8.06 -2.91 -0.02 4.71 16 9 C 0.07 4.31 5.49 84.96 0.47 4.78 16 10 N -0.86 -54.09 13.95 21.68 0.30 -53.79 16 11 Si 0.97 57.77 24.91 68.60 1.71 59.48 16 12 H -0.25 -14.56 4.49 80.48 0.36 -14.20 16 13 H -0.35 -20.89 7.11 99.48 0.71 -20.18 16 14 H -0.31 -19.17 7.11 99.48 0.71 -18.46 16 15 C 0.50 24.17 4.48 86.74 0.39 24.56 16 16 O -0.54 -30.31 9.85 -4.01 -0.04 -30.35 16 17 C -0.11 -4.24 4.64 -20.08 -0.09 -4.33 16 18 C -0.12 -3.62 7.77 22.54 0.18 -3.44 16 19 C -0.09 -1.87 10.03 22.23 0.22 -1.65 16 20 C -0.08 -1.30 10.04 22.33 0.22 -1.08 16 21 C -0.09 -1.88 9.78 22.25 0.22 -1.66 16 22 C -0.07 -2.32 6.25 22.60 0.14 -2.18 16 23 Br -0.05 -1.78 31.71 -20.37 -0.65 -2.43 16 24 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 26 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 27 H 0.14 3.99 6.08 -2.39 -0.01 3.98 16 28 H 0.13 4.37 8.07 -2.38 -0.02 4.35 16 29 H 0.27 16.39 8.31 -92.71 -0.77 15.62 16 30 H 0.11 4.00 4.47 -2.91 -0.01 3.98 16 31 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -82.50 300.04 5.27 -77.23 By element: Atomic # 1 Polarization: -10.99 SS G_CDS: 0.81 Total: -10.18 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 4.61 Total: 17.95 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -0.96 Total: -76.74 kcal Atomic # 8 Polarization: -65.06 SS G_CDS: -0.25 Total: -65.32 kcal Atomic # 14 Polarization: 57.77 SS G_CDS: 1.71 Total: 59.48 kcal Atomic # 35 Polarization: -1.78 SS G_CDS: -0.65 Total: -2.43 kcal Total: -82.50 5.27 -77.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120567607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.209 kcal (2) G-P(sol) polarization free energy of solvation -82.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds