Wall clock time and date at job start Sat Apr 11 2020 06:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34231 * 116.99920 * 2 1 4 4 O 1.20824 * 120.00019 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99759 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47010 * 180.02562 * 5 3 2 7 7 C 1.36886 * 119.99949 * 280.70769 * 6 5 3 8 8 H 1.08001 * 119.99473 * 316.00848 * 7 6 5 9 9 C 1.39035 * 119.99925 * 136.00606 * 7 6 5 10 10 N 1.31367 * 120.00428 * 338.41843 * 9 7 6 11 11 Si 1.86800 * 119.99886 * 158.41217 * 9 7 6 12 12 H 1.48499 * 109.47191 * 65.00565 * 11 9 7 13 13 H 1.48497 * 109.47226 * 185.00220 * 11 9 7 14 14 H 1.48499 * 109.47176 * 305.00547 * 11 9 7 15 15 C 1.34771 * 120.00309 * 100.70889 * 6 5 3 16 16 O 1.21599 * 120.00150 * 186.77100 * 15 6 5 17 17 C 1.47685 * 119.99976 * 6.76537 * 15 6 5 18 18 C 1.39675 * 120.13996 * 142.18608 * 17 15 6 19 19 C 1.37894 * 119.85636 * 180.29933 * 18 17 15 20 20 C 1.38493 * 120.13933 * 359.47446 * 19 18 17 21 21 Br 1.89094 * 119.85879 * 180.25630 * 20 19 18 22 22 C 1.38495 * 120.28538 * 0.50378 * 20 19 18 23 23 C 1.37892 * 120.13932 * 359.77561 * 22 20 19 24 24 H 1.09007 * 109.47006 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47267 * 299.99557 * 1 2 3 26 26 H 1.08999 * 109.47515 * 59.99761 * 1 2 3 27 27 H 1.09001 * 109.47342 * 60.00530 * 5 3 2 28 28 H 1.09003 * 109.47694 * 300.00131 * 5 3 2 29 29 H 0.96998 * 120.00378 * 185.05430 * 10 9 7 30 30 H 1.07993 * 120.07237 * 0.02844 * 18 17 15 31 31 H 1.07996 * 119.93056 * 179.69775 * 19 18 17 32 32 H 1.07994 * 119.93216 * 179.74750 * 22 20 19 33 33 H 1.08003 * 120.07273 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2748 0.0006 6 7 3.9816 2.6797 0.0011 7 6 3.9649 3.3988 -1.1636 8 1 4.3454 2.9604 -2.0743 9 6 3.4580 4.6934 -1.1740 10 7 2.6299 5.0823 -0.2313 11 14 3.9547 5.8800 -2.5286 12 1 3.4438 5.3850 -3.8321 13 1 3.3796 7.2201 -2.2482 14 1 5.4355 5.9781 -2.5823 15 6 4.3802 3.2642 1.1482 16 8 4.6069 4.4586 1.1752 17 6 4.5417 2.4541 2.3724 18 6 5.5907 2.7194 3.2556 19 6 5.7396 1.9554 4.3938 20 6 4.8454 0.9339 4.6676 21 35 5.0528 -0.1042 6.2344 22 6 3.8028 0.6661 3.7961 23 6 3.6464 1.4191 2.6516 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 3.9563 0.7806 -0.8892 28 1 3.9557 0.7809 0.8908 29 1 2.2192 5.9598 -0.2782 30 1 6.2863 3.5183 3.0453 31 1 6.5532 2.1563 5.0751 32 1 3.1113 -0.1345 4.0132 33 1 2.8332 1.2090 1.9726 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120567771.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:39 Heat of formation + Delta-G solvation = -48.226569 kcal Electronic energy + Delta-G solvation = -22035.711107 eV Core-core repulsion = 18495.888026 eV Total energy + Delta-G solvation = -3539.823081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.010 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.22200 -39.17264 -37.56528 -35.78065 -34.23774 -32.62738 -31.63815 -30.86409 -29.15945 -28.51584 -26.36806 -24.95378 -22.56612 -22.45084 -20.77071 -19.63576 -17.35835 -17.03334 -16.60655 -16.35915 -15.59127 -15.35873 -15.08617 -14.70792 -14.23082 -13.99237 -13.55276 -13.27564 -13.03108 -12.73954 -12.66249 -12.36895 -11.69446 -11.64168 -11.47515 -11.11888 -10.93415 -10.85951 -10.72859 -10.56829 -10.29113 -10.24939 -10.23698 -9.70823 -8.88894 -8.81713 -8.57172 -8.23401 -7.33564 -6.13145 -3.92908 1.07536 1.47007 1.66807 2.93637 3.10947 3.29233 3.36822 3.39437 3.63880 4.20005 4.42643 4.70354 4.96018 5.02212 5.19552 5.36580 5.43005 5.45776 5.49797 5.52017 5.61420 5.66073 5.81136 5.87261 5.96483 6.11263 6.31247 6.38321 6.68015 6.93465 6.95588 7.53421 8.11783 8.52189 8.85764 8.96397 9.47173 10.03155 10.91739 Molecular weight = 341.01amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.004055 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.477220 B = 6904.080440 C = 8349.201685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.377 6.377 3 C 0.417 3.583 4 O -0.445 6.445 5 C 0.092 3.908 6 N -0.418 5.418 7 C -0.364 4.364 8 H 0.085 0.915 9 C 0.081 3.919 10 N -0.792 5.792 11 Si 0.913 3.087 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.271 1.271 15 C 0.506 3.494 16 O -0.512 6.512 17 C -0.075 4.075 18 C -0.076 4.076 19 C -0.094 4.094 20 C -0.093 4.093 21 Br -0.065 7.065 22 C -0.093 4.093 23 C -0.110 4.110 24 H 0.092 0.908 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.265 0.735 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -13.296 9.157 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.296 6.296 3 C 0.254 3.746 4 O -0.326 6.326 5 C -0.034 4.034 6 N -0.139 5.139 7 C -0.490 4.490 8 H 0.103 0.897 9 C -0.134 4.134 10 N -0.421 5.421 11 Si 0.739 3.261 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.196 1.196 15 C 0.294 3.706 16 O -0.389 6.389 17 C -0.080 4.080 18 C -0.096 4.096 19 C -0.114 4.114 20 C -0.172 4.172 21 Br 0.020 6.980 22 C -0.113 4.113 23 C -0.130 4.130 24 H 0.110 0.890 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.130 0.870 29 H 0.075 0.925 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.975 -12.512 9.860 16.053 hybrid contribution -0.467 0.774 -0.987 1.338 sum 1.509 -11.738 8.873 14.792 Atomic orbital electron populations 1.23080 0.77985 1.02502 1.02201 1.86542 1.22314 1.35193 1.85508 1.25073 0.93358 0.81487 0.74648 1.90838 1.65885 1.35327 1.40510 1.21834 0.86496 0.89932 1.05111 1.42945 1.55338 1.07273 1.08373 1.18936 1.45165 0.97122 0.87750 0.89741 1.25293 0.93221 0.98479 0.96448 1.69913 1.21187 1.19288 1.31723 0.86279 0.79398 0.79812 0.80567 1.20441 1.21097 1.19644 1.17775 0.82720 0.87548 0.82546 1.90661 1.51452 1.13727 1.83038 1.20791 0.95137 0.95220 0.96813 1.21198 0.97373 0.98485 0.92495 1.21003 0.98473 0.94335 0.97581 1.21765 1.00809 0.99826 0.94825 1.96641 1.97678 1.69998 1.33656 1.20981 0.96785 1.00113 0.93427 1.21681 0.99401 0.95048 0.96854 0.88990 0.92522 0.92382 0.88167 0.87032 0.92469 0.84355 0.84978 0.85036 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.55 101.05 1.07 1.56 16 2 O -0.38 -6.21 10.56 -39.26 -0.41 -6.62 16 3 C 0.42 8.39 5.98 36.00 0.22 8.60 16 4 O -0.44 -11.02 15.88 -18.75 -0.30 -11.31 16 5 C 0.09 1.77 5.47 -5.19 -0.03 1.74 16 6 N -0.42 -10.21 2.12 -117.23 -0.25 -10.46 16 7 C -0.36 -9.74 8.82 -15.00 -0.13 -9.88 16 8 H 0.08 2.14 7.92 -52.49 -0.42 1.72 16 9 C 0.08 2.26 4.28 -17.46 -0.07 2.18 16 10 N -0.79 -23.60 11.74 55.50 0.65 -22.95 16 11 Si 0.91 21.65 29.61 -169.99 -5.03 16.62 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 15 C 0.51 12.66 6.82 -12.40 -0.08 12.57 16 16 O -0.51 -14.85 14.39 5.28 0.08 -14.77 16 17 C -0.08 -1.50 5.39 -104.97 -0.57 -2.07 16 18 C -0.08 -1.29 9.62 -39.17 -0.38 -1.67 16 19 C -0.09 -1.34 9.77 -39.61 -0.39 -1.73 16 20 C -0.09 -1.30 6.23 -39.39 -0.25 -1.54 16 21 Br -0.06 -0.76 33.69 -68.01 -2.29 -3.05 16 22 C -0.09 -1.35 9.77 -39.61 -0.39 -1.74 16 23 C -0.11 -1.92 7.36 -39.17 -0.29 -2.20 16 24 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 26 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 27 H 0.10 1.69 8.12 -51.93 -0.42 1.27 16 28 H 0.11 1.86 4.31 -51.93 -0.22 1.63 16 29 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.14 2.32 8.04 -52.49 -0.42 1.90 16 31 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 32 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.13 2.38 4.02 -52.48 -0.21 2.17 16 LS Contribution 310.63 15.07 4.68 4.68 Total: -1.00 -33.77 310.63 -7.11 -40.88 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -2.94 Total: 1.15 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -1.29 Total: 5.83 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.40 Total: -33.41 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.64 Total: -32.70 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Atomic # 35 Polarization: -0.76 SS G_CDS: -2.29 Total: -3.05 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.77 -7.11 -40.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120567771.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.351 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds