Wall clock time and date at job start Sat Apr 11 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46883 * 2 1 4 4 C 1.50694 * 109.47246 * 240.00040 * 2 1 3 5 5 H 1.08001 * 120.00550 * 245.17422 * 4 2 1 6 6 C 1.37883 * 120.00225 * 65.17652 * 4 2 1 7 7 N 1.31522 * 119.99357 * 5.07377 * 6 4 2 8 8 Si 1.86793 * 120.00298 * 185.07296 * 6 4 2 9 9 H 1.48504 * 109.47118 * 95.00063 * 8 6 4 10 10 H 1.48503 * 109.47569 * 214.99778 * 8 6 4 11 11 H 1.48497 * 109.47469 * 335.00054 * 8 6 4 12 12 N 1.46504 * 109.47304 * 119.99813 * 2 1 3 13 13 C 1.34771 * 119.99748 * 275.00073 * 12 2 1 14 14 O 1.21355 * 120.00682 * 0.02562 * 13 12 2 15 15 C 1.49354 * 119.99398 * 179.97438 * 13 12 2 16 16 O 1.21374 * 120.00457 * 0.02562 * 15 13 12 17 17 N 1.34780 * 119.99611 * 180.02562 * 15 13 12 18 18 C 1.39776 * 119.99792 * 185.59885 * 17 15 13 19 19 C 1.39286 * 120.49649 * 24.61430 * 18 17 15 20 20 C 1.38528 * 118.36265 * 180.28459 * 19 18 17 21 21 C 1.38255 * 119.26588 * 359.45926 * 20 19 18 22 22 N 1.31879 * 120.94083 * 0.30129 * 21 20 19 23 23 C 1.31874 * 121.78937 * 359.97147 * 22 21 20 24 24 Br 1.89092 * 119.68492 * 179.97438 * 23 22 21 25 25 H 1.08998 * 109.47125 * 294.98361 * 1 2 3 26 26 H 1.08996 * 109.47158 * 54.98713 * 1 2 3 27 27 H 1.09001 * 109.47095 * 174.98691 * 1 2 3 28 28 H 0.97004 * 119.99169 * 180.02562 * 7 6 4 29 29 H 0.97001 * 119.99815 * 95.00043 * 12 2 1 30 30 H 0.96995 * 120.00289 * 5.59475 * 17 15 13 31 31 H 1.07998 * 120.81601 * 0.02562 * 19 18 17 32 32 H 1.08003 * 120.36623 * 179.73631 * 20 19 18 33 33 H 1.07994 * 119.52542 * 180.27955 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5826 -1.6346 -1.1336 6 6 1.7896 -0.1804 -2.4799 7 7 1.2079 0.9937 -2.5945 8 14 2.2868 -1.1297 -4.0099 9 1 1.1261 -1.9121 -4.5060 10 1 2.7280 -0.1783 -5.0613 11 1 3.4013 -2.0535 -3.6789 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8580 1.1592 2.4118 15 6 2.6445 -0.7224 3.5767 16 8 2.9332 -1.9001 3.5222 17 7 2.7727 -0.0501 4.7378 18 6 3.3472 -0.6758 5.8478 19 6 4.2280 -1.7419 5.6811 20 6 4.7669 -2.3332 6.8120 21 6 4.4252 -1.8434 8.0589 22 7 3.5920 -0.8289 8.1838 23 6 3.0519 -0.2402 7.1346 24 35 1.8636 1.2097 7.3828 25 1 -0.3633 0.4340 0.9315 26 1 -0.3633 0.5896 -0.8416 27 1 -0.3633 -1.0237 -0.0898 28 1 1.0367 1.3663 -3.4736 29 1 2.2491 -1.6318 1.1526 30 1 2.4664 0.8679 4.8031 31 1 4.4812 -2.1013 4.6947 32 1 5.4500 -3.1648 6.7204 33 1 4.8465 -2.2983 8.9431 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123166968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:41 Heat of formation + Delta-G solvation = -46.877385 kcal Electronic energy + Delta-G solvation = -20766.744641 eV Core-core repulsion = 17259.272816 eV Total energy + Delta-G solvation = -3507.471825 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.016 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.44733 -41.05964 -39.69486 -37.20026 -36.42926 -34.36135 -33.88856 -32.38395 -31.21460 -30.50737 -27.36414 -26.66930 -24.88468 -24.03275 -22.56253 -21.37954 -20.42202 -18.90800 -18.35052 -17.91948 -17.55924 -17.35453 -16.97732 -16.69985 -16.01682 -15.61402 -15.24893 -15.08079 -14.97474 -14.45030 -14.32287 -13.83598 -13.41325 -13.05152 -13.00923 -12.81480 -12.65811 -12.48285 -12.38575 -12.17274 -12.12899 -11.63795 -11.17972 -11.07217 -10.74222 -10.64333 -10.46116 -10.03152 -9.56060 -8.22658 -6.37424 -0.49963 -0.06633 0.16913 0.41365 1.07275 1.45889 1.47193 1.57626 2.00382 2.36308 2.52355 2.54967 3.10741 3.33275 3.37203 3.56327 3.85077 3.96258 4.28020 4.60076 4.69111 4.82990 4.89645 4.97089 5.01428 5.27026 5.37635 5.45602 5.57011 5.63944 5.77754 5.95432 6.27215 6.55249 6.61907 6.68489 7.02312 7.34136 8.86041 Molecular weight = 341.02amu Principal moments of inertia in cm(-1) A = 0.022707 B = 0.002867 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.792424 B = 9764.647100 C =10811.160533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.266 3.734 3 H 0.020 0.980 4 C -0.552 4.552 5 H 0.073 0.927 6 C 0.020 3.980 7 N -0.915 5.915 8 Si 0.970 3.030 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.263 1.263 12 N -0.665 5.665 13 C 0.496 3.504 14 O -0.553 6.553 15 C 0.525 3.475 16 O -0.502 6.502 17 N -0.634 5.634 18 C 0.117 3.883 19 C -0.095 4.095 20 C -0.115 4.115 21 C 0.091 3.909 22 N -0.458 5.458 23 C 0.077 3.923 24 Br -0.004 7.004 25 H 0.025 0.975 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.267 0.733 29 H 0.412 0.588 30 H 0.429 0.571 31 H 0.160 0.840 32 H 0.188 0.812 33 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.249 -5.728 21.794 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.164 3.836 3 H 0.038 0.962 4 C -0.590 4.590 5 H 0.092 0.908 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.795 3.205 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.188 1.188 12 N -0.315 5.315 13 C 0.275 3.725 14 O -0.433 6.433 15 C 0.307 3.693 16 O -0.376 6.376 17 N -0.282 5.282 18 C 0.016 3.984 19 C -0.124 4.124 20 C -0.135 4.135 21 C -0.069 4.069 22 N -0.168 5.168 23 C -0.142 4.142 24 Br 0.080 6.920 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.248 0.752 30 H 0.269 0.731 31 H 0.177 0.823 32 H 0.205 0.795 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.492 -4.710 22.468 23.604 hybrid contribution 0.300 -0.434 -1.840 1.914 sum 5.791 -5.144 20.628 22.035 Atomic orbital electron populations 1.21875 0.97466 1.00339 0.99334 1.18655 0.91558 0.92752 0.80619 0.96245 1.21481 1.37288 1.09503 0.90726 0.90847 1.25736 0.94701 0.95460 1.02162 1.70083 1.42667 1.17408 1.25061 0.85354 0.78751 0.78240 0.78159 1.19844 1.21147 1.18757 1.46234 1.61582 1.14859 1.08810 1.19967 0.80543 0.87033 0.84962 1.90742 1.51152 1.16313 1.85093 1.20279 0.78234 0.86542 0.84249 1.90693 1.47276 1.14915 1.84675 1.43250 1.58394 1.17997 1.08513 1.18605 0.96482 0.97354 0.85910 1.22107 0.93338 0.94085 1.02852 1.22670 0.99041 1.00496 0.91271 1.23532 0.92894 0.90992 0.99449 1.67465 1.08911 1.09463 1.30936 1.22556 1.02333 1.00052 0.89210 1.96812 1.58307 1.39177 1.97696 0.95625 0.92332 0.93512 0.92371 0.75169 0.73078 0.82253 0.79504 0.77633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.23 9.26 71.98 0.67 -5.56 16 2 C 0.27 13.17 2.43 44.24 0.11 13.27 16 3 H 0.02 1.13 7.56 -2.39 -0.02 1.11 16 4 C -0.55 -28.29 8.67 25.60 0.22 -28.07 16 5 H 0.07 3.56 7.72 -2.91 -0.02 3.53 16 6 C 0.02 1.06 5.29 84.66 0.45 1.51 16 7 N -0.91 -50.82 11.97 21.45 0.26 -50.56 16 8 Si 0.97 40.93 29.54 68.60 2.03 42.95 16 9 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 12 N -0.67 -27.22 5.06 -447.54 -2.27 -29.49 16 13 C 0.50 19.13 7.85 87.24 0.68 19.82 16 14 O -0.55 -24.21 16.15 -3.26 -0.05 -24.26 16 15 C 0.52 16.60 7.71 87.24 0.67 17.27 16 16 O -0.50 -15.87 13.68 -3.32 -0.05 -15.91 16 17 N -0.63 -17.47 5.16 -304.45 -1.57 -19.04 16 18 C 0.12 2.88 6.44 38.32 0.25 3.13 16 19 C -0.10 -1.99 8.82 22.59 0.20 -1.79 16 20 C -0.11 -1.52 10.10 22.34 0.23 -1.30 16 21 C 0.09 1.27 11.18 84.69 0.95 2.22 16 22 N -0.46 -9.71 10.32 -190.21 -1.96 -11.67 16 23 C 0.08 1.82 7.19 84.88 0.61 2.43 16 24 Br 0.00 -0.08 32.49 -20.37 -0.66 -0.75 16 25 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 3.02 6.82 -2.39 -0.02 3.00 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 29 H 0.41 15.19 8.00 -92.71 -0.74 14.45 16 30 H 0.43 11.61 7.00 -92.71 -0.65 10.96 16 31 H 0.16 3.57 5.89 -2.91 -0.02 3.56 16 32 H 0.19 1.00 8.06 -2.91 -0.02 0.97 16 33 H 0.21 1.14 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -62.97 314.32 0.55 -62.42 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.20 Total: 23.37 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: 5.03 Total: 22.93 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -5.54 Total: -110.76 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -0.10 Total: -40.17 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -0.66 Total: -0.75 kcal Total: -62.97 0.55 -62.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123166968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.541 kcal (2) G-P(sol) polarization free energy of solvation -62.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds