Wall clock time and date at job start Sat Apr 11 2020 06:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50708 * 109.46855 * 240.00199 * 2 1 3 5 5 H 1.08000 * 119.99748 * 239.99938 * 4 2 1 6 6 C 1.37877 * 119.99861 * 59.99893 * 4 2 1 7 7 N 1.31518 * 120.00043 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99959 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47229 * 89.99765 * 8 6 4 10 10 H 1.48498 * 109.47523 * 210.00155 * 8 6 4 11 11 H 1.48507 * 109.47175 * 330.00151 * 8 6 4 12 12 N 1.46491 * 109.47319 * 120.00502 * 2 1 3 13 13 C 1.34785 * 120.00113 * 275.00017 * 12 2 1 14 14 O 1.21359 * 119.99504 * 359.72055 * 13 12 2 15 15 C 1.49343 * 120.00182 * 179.72676 * 13 12 2 16 16 O 1.21381 * 120.00391 * 359.97438 * 15 13 12 17 17 N 1.34785 * 119.99757 * 180.02562 * 15 13 12 18 18 C 1.39784 * 119.99668 * 175.32432 * 17 15 13 19 19 C 1.39354 * 120.48481 * 34.96328 * 18 17 15 20 20 C 1.38453 * 118.36413 * 179.97438 * 19 18 17 21 21 C 1.38398 * 119.23711 * 359.97438 * 20 19 18 22 22 Br 1.89096 * 119.54751 * 180.02562 * 21 20 19 23 23 N 1.31928 * 120.90497 * 359.97438 * 21 20 19 24 24 C 1.31832 * 121.78549 * 359.76739 * 23 21 20 25 25 H 1.08998 * 109.47109 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46484 * 299.99658 * 1 2 3 27 27 H 1.08999 * 109.47432 * 59.99636 * 1 2 3 28 28 H 0.96995 * 119.99763 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00806 * 94.72017 * 12 2 1 30 30 H 0.96999 * 119.99868 * 355.31240 * 17 15 13 31 31 H 1.07999 * 120.81544 * 359.95597 * 19 18 17 32 32 H 1.08007 * 120.37884 * 179.97438 * 20 19 18 33 33 H 1.08003 * 119.66671 * 180.24354 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3211 -1.1202 -4.0080 9 1 1.3425 -2.1615 -4.4119 10 1 2.4864 -0.1413 -5.1124 11 1 3.6291 -1.7583 -3.7124 12 7 2.0184 -0.6907 1.1960 13 6 2.1471 -0.0184 2.3571 14 8 1.8633 1.1603 2.4104 15 6 2.6392 -0.7240 3.5779 16 8 2.9228 -1.9030 3.5247 17 7 2.7674 -0.0517 4.7391 18 6 3.1339 -0.7323 5.9038 19 6 4.0235 -1.8034 5.8466 20 6 4.3565 -2.4456 7.0270 21 6 3.8002 -2.0064 8.2158 22 35 4.2496 -2.8768 9.8333 23 7 2.9615 -0.9883 8.2360 24 6 2.6221 -0.3462 7.1357 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.7094 1.1619 -3.4843 29 1 2.2453 -1.6328 1.1535 30 1 2.6056 0.9043 4.7665 31 1 4.4426 -2.1247 4.9045 32 1 5.0426 -3.2798 7.0203 33 1 1.9354 0.4854 7.1924 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123208309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:45 Heat of formation + Delta-G solvation = -27.895756 kcal Electronic energy + Delta-G solvation = -20475.330173 eV Core-core repulsion = 16968.681454 eV Total energy + Delta-G solvation = -3506.648720 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.016 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.30208 -39.93408 -38.27455 -35.80943 -34.93500 -32.74227 -32.53437 -32.03528 -29.56596 -29.13278 -25.46756 -25.14251 -24.27411 -22.88050 -20.99339 -19.86145 -19.02847 -17.73229 -17.07275 -16.90387 -16.34283 -15.89629 -15.44699 -15.22003 -14.64563 -14.57099 -14.30828 -13.70585 -13.58333 -13.30891 -12.61136 -12.57629 -11.91676 -11.72281 -11.50315 -11.22525 -11.06906 -10.89783 -10.83936 -10.71816 -10.45930 -10.34640 -10.19171 -9.96090 -9.26940 -9.20517 -8.71796 -8.65876 -8.25561 -6.24692 -4.34811 0.37702 0.82016 1.04774 1.60101 2.37008 3.18924 3.21292 3.26186 3.28612 3.50278 3.80936 4.10888 4.25901 4.42470 4.53096 4.64700 4.93505 5.08571 5.16746 5.34314 5.64109 5.73944 6.22919 6.62073 6.72526 6.77927 6.92617 7.07949 7.25164 7.28784 7.52003 7.60134 7.72589 7.96446 8.29198 8.48035 8.74369 9.32611 10.81319 Molecular weight = 341.02amu Principal moments of inertia in cm(-1) A = 0.037918 B = 0.002026 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.258947 B =13820.302398 C =14355.999993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.056 0.944 4 C -0.538 4.538 5 H 0.065 0.935 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.665 5.665 13 C 0.496 3.504 14 O -0.532 6.532 15 C 0.511 3.489 16 O -0.502 6.502 17 N -0.647 5.647 18 C 0.116 3.884 19 C -0.074 4.074 20 C -0.115 4.115 21 C 0.099 3.901 22 Br -0.011 7.011 23 N -0.441 5.441 24 C 0.090 3.910 25 H 0.030 0.970 26 H 0.017 0.983 27 H 0.095 0.905 28 H 0.266 0.734 29 H 0.403 0.597 30 H 0.429 0.571 31 H 0.162 0.838 32 H 0.150 0.850 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.431 -5.526 22.219 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.577 4.577 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.314 5.314 13 C 0.274 3.726 14 O -0.410 6.410 15 C 0.294 3.706 16 O -0.375 6.375 17 N -0.295 5.295 18 C 0.018 3.982 19 C -0.103 4.103 20 C -0.138 4.138 21 C -0.118 4.118 22 Br 0.073 6.927 23 N -0.150 5.150 24 C -0.072 4.072 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.237 0.763 30 H 0.268 0.732 31 H 0.180 0.820 32 H 0.168 0.832 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.115 -5.453 23.338 24.734 hybrid contribution 0.472 -0.484 -1.951 2.065 sum 6.587 -5.937 21.387 23.153 Atomic orbital electron populations 1.22111 0.97726 0.99647 1.01308 1.19019 0.91503 0.94169 0.79212 0.92668 1.21173 1.32979 1.13551 0.89965 0.91715 1.24879 0.94652 0.94904 0.99135 1.69886 1.35608 1.22261 1.24193 0.86381 0.79267 0.79260 0.81843 1.20411 1.20978 1.19739 1.46539 1.61080 1.14512 1.09228 1.19530 0.81460 0.87324 0.84336 1.90750 1.50755 1.15002 1.84519 1.21149 0.77560 0.87069 0.84825 1.90731 1.46590 1.15601 1.84561 1.43210 1.66926 1.13331 1.06007 1.18946 0.95775 0.95916 0.87528 1.21868 0.94073 0.94526 0.99805 1.21943 1.00340 1.00816 0.90654 1.22724 0.99666 0.96960 0.92404 1.96777 1.91410 1.75357 1.29142 1.67421 1.11297 1.05954 1.30329 1.22694 0.98542 1.00159 0.85836 0.95040 0.96428 0.88624 0.92366 0.76263 0.73212 0.82028 0.83234 0.81209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.26 37.16 0.34 -3.15 16 2 C 0.26 6.27 2.56 -69.08 -0.18 6.09 16 3 H 0.06 1.49 7.57 -51.93 -0.39 1.10 16 4 C -0.54 -13.67 8.73 -34.44 -0.30 -13.98 16 5 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -23.74 11.32 55.43 0.63 -23.11 16 8 Si 0.91 19.98 29.54 -169.99 -5.02 14.96 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 12 N -0.66 -13.28 5.06 -55.40 -0.28 -13.57 16 13 C 0.50 9.06 7.85 -11.63 -0.09 8.97 16 14 O -0.53 -10.81 16.14 5.49 0.09 -10.72 16 15 C 0.51 7.63 7.74 -11.63 -0.09 7.54 16 16 O -0.50 -8.00 13.95 5.47 0.08 -7.93 16 17 N -0.65 -7.56 5.33 -10.19 -0.05 -7.62 16 18 C 0.12 1.29 6.32 -83.58 -0.53 0.76 16 19 C -0.07 -0.82 8.81 -39.09 -0.34 -1.16 16 20 C -0.11 -1.12 9.82 -39.44 -0.39 -1.51 16 21 C 0.10 1.07 7.16 -17.45 -0.12 0.95 16 22 Br -0.01 -0.10 33.86 -68.01 -2.30 -2.40 16 23 N -0.44 -5.07 10.31 -11.47 -0.12 -5.19 16 24 C 0.09 0.91 11.12 -17.32 -0.19 0.72 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 28 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.40 7.44 8.01 -40.82 -0.33 7.12 16 30 H 0.43 4.28 8.30 -40.82 -0.34 3.94 16 31 H 0.16 1.86 6.32 -52.49 -0.33 1.53 16 32 H 0.15 1.11 8.06 -52.48 -0.42 0.68 16 33 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 316.25 15.07 4.77 4.77 Total: -1.00 -28.68 316.25 -7.14 -35.83 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -2.94 Total: 8.09 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -1.99 Total: 6.89 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.17 Total: -49.48 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.16 Total: -18.65 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -2.30 Total: -2.40 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.68 -7.14 -35.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123208309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.930 kcal (2) G-P(sol) polarization free energy of solvation -28.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds