Wall clock time and date at job start Sat Apr 11 2020 06:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50708 * 109.46855 * 240.00199 * 2 1 3 5 5 H 1.08000 * 119.99748 * 239.99938 * 4 2 1 6 6 C 1.37877 * 119.99861 * 59.99893 * 4 2 1 7 7 N 1.31518 * 120.00043 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99959 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47229 * 89.99765 * 8 6 4 10 10 H 1.48498 * 109.47523 * 210.00155 * 8 6 4 11 11 H 1.48507 * 109.47175 * 330.00151 * 8 6 4 12 12 N 1.46491 * 109.47319 * 120.00502 * 2 1 3 13 13 C 1.34785 * 120.00113 * 275.00017 * 12 2 1 14 14 O 1.21359 * 119.99504 * 359.72055 * 13 12 2 15 15 C 1.49343 * 120.00182 * 179.72676 * 13 12 2 16 16 O 1.21381 * 120.00391 * 359.97438 * 15 13 12 17 17 N 1.34785 * 119.99757 * 180.02562 * 15 13 12 18 18 C 1.39784 * 119.99668 * 175.32432 * 17 15 13 19 19 C 1.39354 * 120.48481 * 34.96328 * 18 17 15 20 20 C 1.38453 * 118.36413 * 179.97438 * 19 18 17 21 21 C 1.38398 * 119.23711 * 359.97438 * 20 19 18 22 22 Br 1.89096 * 119.54751 * 180.02562 * 21 20 19 23 23 N 1.31928 * 120.90497 * 359.97438 * 21 20 19 24 24 C 1.31832 * 121.78549 * 359.76739 * 23 21 20 25 25 H 1.08998 * 109.47109 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46484 * 299.99658 * 1 2 3 27 27 H 1.08999 * 109.47432 * 59.99636 * 1 2 3 28 28 H 0.96995 * 119.99763 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00806 * 94.72017 * 12 2 1 30 30 H 0.96999 * 119.99868 * 355.31240 * 17 15 13 31 31 H 1.07999 * 120.81544 * 359.95597 * 19 18 17 32 32 H 1.08007 * 120.37884 * 179.97438 * 20 19 18 33 33 H 1.08003 * 119.66671 * 180.24354 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3211 -1.1202 -4.0080 9 1 1.3425 -2.1615 -4.4119 10 1 2.4864 -0.1413 -5.1124 11 1 3.6291 -1.7583 -3.7124 12 7 2.0184 -0.6907 1.1960 13 6 2.1471 -0.0184 2.3571 14 8 1.8633 1.1603 2.4104 15 6 2.6392 -0.7240 3.5779 16 8 2.9228 -1.9030 3.5247 17 7 2.7674 -0.0517 4.7391 18 6 3.1339 -0.7323 5.9038 19 6 4.0235 -1.8034 5.8466 20 6 4.3565 -2.4456 7.0270 21 6 3.8002 -2.0064 8.2158 22 35 4.2496 -2.8768 9.8333 23 7 2.9615 -0.9883 8.2360 24 6 2.6221 -0.3462 7.1357 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.7094 1.1619 -3.4843 29 1 2.2453 -1.6328 1.1535 30 1 2.6056 0.9043 4.7665 31 1 4.4426 -2.1247 4.9045 32 1 5.0426 -3.2798 7.0203 33 1 1.9354 0.4854 7.1924 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123208309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:45 Heat of formation + Delta-G solvation = -48.007780 kcal Electronic energy + Delta-G solvation = -20476.202296 eV Core-core repulsion = 16968.681454 eV Total energy + Delta-G solvation = -3507.520842 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.016 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.36150 -41.07071 -39.65146 -37.16838 -36.39425 -34.36246 -33.55140 -32.88967 -31.13512 -30.25888 -27.38301 -26.45610 -25.10625 -24.01206 -22.49205 -21.34593 -20.36651 -18.84151 -18.26790 -17.93669 -17.58951 -17.39895 -16.98237 -16.62190 -16.03350 -15.50334 -15.32922 -15.05374 -14.96105 -14.45922 -14.39277 -13.76930 -13.42229 -13.08897 -12.91171 -12.84435 -12.68483 -12.62476 -12.31217 -12.14600 -11.65615 -11.50866 -11.15977 -11.08142 -10.92160 -10.64539 -10.50565 -10.00158 -9.54250 -8.20587 -6.37651 -0.51901 0.00640 0.25636 0.34921 1.17025 1.45999 1.47273 1.57235 2.04329 2.37715 2.45982 2.61864 3.10637 3.32067 3.42777 3.61088 3.73716 3.83944 4.43786 4.49488 4.69781 4.80693 4.86670 4.88298 5.01298 5.29434 5.33075 5.42789 5.58497 5.71932 5.85665 6.03591 6.39575 6.48547 6.63583 6.70940 7.04455 7.34662 8.85416 Molecular weight = 341.02amu Principal moments of inertia in cm(-1) A = 0.037918 B = 0.002026 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.258947 B =13820.302398 C =14355.999993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.269 3.731 3 H 0.017 0.983 4 C -0.552 4.552 5 H 0.071 0.929 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.266 1.266 12 N -0.669 5.669 13 C 0.497 3.503 14 O -0.553 6.553 15 C 0.524 3.476 16 O -0.512 6.512 17 N -0.628 5.628 18 C 0.102 3.898 19 C -0.080 4.080 20 C -0.110 4.110 21 C 0.090 3.910 22 Br 0.001 6.999 23 N -0.459 5.459 24 C 0.099 3.901 25 H 0.039 0.961 26 H 0.022 0.978 27 H 0.073 0.927 28 H 0.267 0.733 29 H 0.411 0.589 30 H 0.437 0.563 31 H 0.157 0.843 32 H 0.173 0.827 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.079 -6.634 23.203 25.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.166 3.834 3 H 0.035 0.965 4 C -0.590 4.590 5 H 0.089 0.911 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.795 3.205 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.191 1.191 12 N -0.319 5.319 13 C 0.276 3.724 14 O -0.433 6.433 15 C 0.306 3.694 16 O -0.386 6.386 17 N -0.276 5.276 18 C 0.005 3.995 19 C -0.108 4.108 20 C -0.133 4.133 21 C -0.126 4.126 22 Br 0.085 6.915 23 N -0.168 5.168 24 C -0.063 4.063 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.247 0.753 30 H 0.278 0.722 31 H 0.175 0.825 32 H 0.190 0.810 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 6.778 -6.567 24.381 26.144 hybrid contribution 0.298 -0.117 -2.114 2.138 sum 7.076 -6.684 22.267 24.302 Atomic orbital electron populations 1.21942 0.97480 0.99829 1.00400 1.18621 0.91653 0.92463 0.80640 0.96489 1.21490 1.33030 1.13767 0.90695 0.91061 1.25709 0.94781 0.95530 1.02061 1.70013 1.36616 1.23552 1.24830 0.85365 0.78926 0.78095 0.78098 1.19778 1.21025 1.19062 1.46263 1.61796 1.14821 1.08970 1.20009 0.80401 0.87030 0.84919 1.90736 1.51348 1.16125 1.85097 1.20259 0.78006 0.86617 0.84538 1.90740 1.47434 1.15759 1.84650 1.42958 1.65805 1.13632 1.05249 1.19025 0.96713 0.96446 0.87296 1.21929 0.94179 0.94630 1.00100 1.22144 1.00250 1.01080 0.89808 1.23027 0.99428 0.96864 0.93287 1.96789 1.91252 1.75002 1.28415 1.67493 1.11969 1.06577 1.30794 1.23050 0.98088 1.00221 0.84981 0.94167 0.95925 0.90863 0.92333 0.75301 0.72183 0.82548 0.80979 0.78701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.52 9.26 71.98 0.67 -5.86 16 2 C 0.27 13.07 2.56 44.25 0.11 13.19 16 3 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 4 C -0.55 -28.08 8.73 25.60 0.22 -27.85 16 5 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 6 C 0.02 1.03 5.30 84.65 0.45 1.48 16 7 N -0.91 -49.78 11.32 21.45 0.24 -49.54 16 8 Si 0.97 40.69 29.54 68.60 2.03 42.71 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 12 N -0.67 -26.73 5.06 -447.53 -2.26 -28.99 16 13 C 0.50 18.03 7.85 87.23 0.68 18.72 16 14 O -0.55 -22.57 16.14 -3.27 -0.05 -22.62 16 15 C 0.52 15.07 7.74 87.23 0.68 15.74 16 16 O -0.51 -15.67 13.95 -3.34 -0.05 -15.72 16 17 N -0.63 -13.73 5.33 -304.51 -1.62 -15.36 16 18 C 0.10 2.08 6.32 38.29 0.24 2.32 16 19 C -0.08 -1.63 8.81 22.59 0.20 -1.43 16 20 C -0.11 -1.94 9.82 22.36 0.22 -1.72 16 21 C 0.09 1.77 7.16 84.72 0.61 2.38 16 22 Br 0.00 0.02 33.86 -20.37 -0.69 -0.66 16 23 N -0.46 -9.65 10.31 -190.20 -1.96 -11.61 16 24 C 0.10 1.79 11.12 84.84 0.94 2.73 16 25 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 28 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.41 15.01 8.01 -92.71 -0.74 14.26 16 30 H 0.44 8.05 8.30 -92.71 -0.77 7.28 16 31 H 0.16 3.39 6.32 -2.91 -0.02 3.37 16 32 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -60.75 316.25 0.33 -60.42 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.32 Total: 21.67 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: 5.02 Total: 19.70 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -5.61 Total: -105.49 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -0.10 Total: -38.34 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -0.69 Total: -0.66 kcal Total: -60.75 0.33 -60.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123208309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.407 kcal (2) G-P(sol) polarization free energy of solvation -60.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds