Wall clock time and date at job start Sat Apr 11 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00342 * 2 1 4 4 O 1.20829 * 119.99996 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00333 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47150 * 180.02562 * 5 3 2 7 7 C 1.36941 * 119.99613 * 275.87507 * 6 5 3 8 8 H 1.07997 * 119.99789 * 175.88759 * 7 6 5 9 9 C 1.38814 * 120.00210 * 355.88252 * 7 6 5 10 10 N 1.31620 * 119.99622 * 33.61181 * 9 7 6 11 11 Si 1.86795 * 119.99995 * 213.61002 * 9 7 6 12 12 H 1.48499 * 109.47138 * 84.99766 * 11 9 7 13 13 H 1.48505 * 109.47098 * 204.99631 * 11 9 7 14 14 H 1.48504 * 109.47175 * 324.99955 * 11 9 7 15 15 C 1.46495 * 120.00407 * 95.87505 * 6 5 3 16 16 C 1.50696 * 109.47409 * 269.99847 * 15 6 5 17 17 C 1.38261 * 119.99312 * 90.00120 * 16 15 6 18 18 C 1.38216 * 120.02175 * 180.25840 * 17 16 15 19 19 C 1.38249 * 120.00617 * 359.48272 * 18 17 16 20 20 C 1.50699 * 120.00343 * 180.25724 * 19 18 17 21 21 C 1.38299 * 119.98770 * 0.53766 * 19 18 17 22 22 Br 1.89103 * 120.00832 * 179.69733 * 21 19 18 23 23 C 1.38188 * 119.99566 * 270.02213 * 16 15 6 24 24 H 1.08992 * 109.47115 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46898 * 300.00379 * 1 2 3 26 26 H 1.08997 * 109.46527 * 60.00209 * 1 2 3 27 27 H 1.09000 * 109.47537 * 59.99119 * 5 3 2 28 28 H 1.09007 * 109.46715 * 299.99682 * 5 3 2 29 29 H 0.97006 * 119.99720 * 180.02562 * 10 9 7 30 30 H 1.09002 * 109.47356 * 149.99497 * 15 6 5 31 31 H 1.09009 * 109.46904 * 30.00144 * 15 6 5 32 32 H 1.08003 * 119.99015 * 359.97372 * 17 16 15 33 33 H 1.07997 * 119.99790 * 179.74341 * 18 17 16 34 34 H 1.09004 * 109.47133 * 270.28047 * 20 19 18 35 35 H 1.09000 * 109.47182 * 30.27763 * 20 19 18 36 36 H 1.08995 * 109.47231 * 150.28155 * 20 19 18 37 37 H 1.08001 * 120.00773 * 359.97171 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.0590 3.3714 -1.1792 8 1 4.3005 4.4240 -1.1730 9 6 3.8269 2.7196 -2.3826 10 7 2.9498 1.7401 -2.4420 11 14 4.7595 3.2327 -3.9177 12 1 6.0703 2.5360 -3.9566 13 1 3.9696 2.8690 -5.1215 14 1 4.9799 4.7011 -3.8953 15 6 4.3146 3.3445 1.2624 16 6 3.0735 3.9732 1.8415 17 6 2.2692 3.2493 2.7023 18 6 1.1279 3.8235 3.2296 19 6 0.7958 5.1257 2.9049 20 6 -0.4456 5.7536 3.4845 21 6 1.5997 5.8499 2.0436 22 35 1.1413 7.6282 1.5924 23 6 2.7391 5.2729 1.5119 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 3.9559 0.7807 -0.8907 28 1 3.9564 0.7805 0.8892 29 1 2.7879 1.2844 -3.2829 30 1 5.0620 4.1168 1.0803 31 1 4.7126 2.6121 1.9649 32 1 2.5304 2.2333 2.9591 33 1 0.4978 3.2564 3.8986 34 1 -1.2918 5.5616 2.8248 35 1 -0.6455 5.3243 4.4662 36 1 -0.2973 6.8291 3.5815 37 1 3.3675 5.8383 0.8396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129156708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:53 Heat of formation + Delta-G solvation = -28.671726 kcal Electronic energy + Delta-G solvation = -22542.191782 eV Core-core repulsion = 19139.049758 eV Total energy + Delta-G solvation = -3403.142025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.21512 -38.72992 -36.09931 -34.59926 -33.09106 -31.66214 -31.09620 -28.98317 -28.48925 -27.35539 -25.99243 -24.59676 -22.11756 -21.94057 -20.17721 -19.68708 -16.99216 -16.27647 -15.63411 -15.49142 -15.25193 -15.10185 -14.70914 -14.48341 -13.84335 -13.61221 -13.26497 -13.01976 -12.78748 -12.22656 -12.20174 -12.17584 -11.80591 -11.58340 -11.14748 -11.05482 -10.99494 -10.86068 -10.61420 -10.48255 -10.33487 -10.20973 -9.94964 -9.79982 -9.57790 -9.04696 -8.44594 -8.27282 -8.01272 -7.26306 -6.06066 -3.18988 1.64851 1.83832 2.03666 3.34931 3.43652 3.44288 3.88241 4.03728 4.12633 4.47185 5.09297 5.13319 5.20489 5.37558 5.46661 5.55457 5.76829 5.79626 5.80871 5.86479 5.92745 5.95157 6.06329 6.10425 6.23833 6.32343 6.43862 6.49526 6.62128 6.74245 6.82801 7.07032 7.14829 7.38487 7.66808 7.80085 8.03445 8.92021 9.40105 9.64030 10.03202 11.05940 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.005208 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.692738 B = 5375.321012 C = 6680.298784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.385 6.385 3 C 0.459 3.541 4 O -0.494 6.494 5 C 0.178 3.822 6 N -0.557 5.557 7 C -0.255 4.255 8 H 0.085 0.915 9 C 0.009 3.991 10 N -0.888 5.888 11 Si 0.897 3.103 12 H -0.285 1.285 13 H -0.294 1.294 14 H -0.280 1.280 15 C 0.178 3.822 16 C -0.075 4.075 17 C -0.086 4.086 18 C -0.116 4.116 19 C -0.077 4.077 20 C -0.117 4.117 21 C -0.086 4.086 22 Br -0.073 7.073 23 C -0.066 4.066 24 H 0.078 0.922 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.117 0.883 28 H 0.053 0.947 29 H 0.259 0.741 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.828 3.764 11.564 12.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.302 6.302 3 C 0.298 3.702 4 O -0.378 6.378 5 C 0.049 3.951 6 N -0.275 5.275 7 C -0.383 4.383 8 H 0.102 0.898 9 C -0.189 4.189 10 N -0.532 5.532 11 Si 0.726 3.274 12 H -0.212 1.212 13 H -0.221 1.221 14 H -0.205 1.205 15 C 0.051 3.949 16 C -0.079 4.079 17 C -0.106 4.106 18 C -0.135 4.135 19 C -0.079 4.079 20 C -0.173 4.173 21 C -0.165 4.165 22 Br 0.012 6.988 23 C -0.087 4.087 24 H 0.097 0.903 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.134 0.866 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.245 4.663 11.212 12.569 hybrid contribution -0.310 -0.138 -1.097 1.149 sum -3.555 4.526 10.115 11.637 Atomic orbital electron populations 1.22813 0.80087 1.01102 1.01111 1.86557 1.20773 1.37062 1.85842 1.25609 0.93471 0.80321 0.70769 1.90521 1.66436 1.36133 1.44727 1.20920 0.85685 0.86781 1.01706 1.44701 1.73498 1.07345 1.01935 1.19258 1.41855 0.94660 0.82508 0.89753 1.24715 0.98021 0.98416 0.97789 1.70044 1.29517 1.27122 1.26471 0.86353 0.80406 0.78297 0.82312 1.21176 1.22066 1.20493 1.20083 0.91707 0.95814 0.87276 1.20995 1.00307 0.92736 0.93889 1.20928 0.94444 0.98766 0.96429 1.20773 0.97393 0.93958 1.01384 1.19518 0.96468 0.94376 0.97565 1.20881 0.95092 1.01053 1.00324 1.21541 0.99725 0.91259 1.03988 1.96542 1.93590 1.15623 1.92999 1.20841 0.95042 0.95246 0.97571 0.90331 0.93793 0.93010 0.86571 0.92879 0.93069 0.91344 0.92501 0.86944 0.86483 0.91194 0.91766 0.91091 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.56 101.05 1.07 1.86 16 2 O -0.38 -8.29 10.56 -39.25 -0.41 -8.70 16 3 C 0.46 10.84 6.12 36.01 0.22 11.06 16 4 O -0.49 -13.05 14.34 -18.75 -0.27 -13.32 16 5 C 0.18 3.97 5.64 -5.19 -0.03 3.94 16 6 N -0.56 -12.69 2.06 -175.98 -0.36 -13.06 16 7 C -0.25 -6.53 9.47 -15.06 -0.14 -6.68 16 8 H 0.08 2.16 8.01 -52.49 -0.42 1.74 16 9 C 0.01 0.25 4.88 -17.43 -0.09 0.16 16 10 N -0.89 -24.35 9.26 55.49 0.51 -23.84 16 11 Si 0.90 20.96 29.66 -169.99 -5.04 15.91 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 15 C 0.18 3.32 5.83 -5.20 -0.03 3.29 16 16 C -0.07 -1.42 4.75 -104.63 -0.50 -1.91 16 17 C -0.09 -1.52 8.83 -39.58 -0.35 -1.87 16 18 C -0.12 -1.91 9.70 -39.59 -0.38 -2.29 16 19 C -0.08 -1.27 5.88 -104.60 -0.62 -1.89 16 20 C -0.12 -1.55 9.55 36.01 0.34 -1.20 16 21 C -0.09 -1.54 6.22 -39.52 -0.25 -1.78 16 22 Br -0.07 -1.14 31.79 -68.01 -2.16 -3.30 16 23 C -0.07 -1.27 9.44 -39.56 -0.37 -1.64 16 24 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.04 0.76 8.13 -51.93 -0.42 0.33 16 26 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 27 H 0.12 2.82 6.14 -51.93 -0.32 2.50 16 28 H 0.05 0.99 7.83 -51.93 -0.41 0.58 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.07 1.21 7.98 -51.93 -0.41 0.80 16 31 H 0.06 0.91 7.80 -51.92 -0.40 0.51 16 32 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 33 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 36 H 0.07 0.90 6.65 -51.93 -0.35 0.55 16 37 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 333.41 15.07 5.02 5.02 Total: -1.00 -30.23 333.41 -8.66 -38.89 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.82 Total: 1.35 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -1.12 Total: 1.04 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.15 Total: -36.90 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.68 Total: -22.03 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.04 Total: 15.91 kcal Atomic # 35 Polarization: -1.14 SS G_CDS: -2.16 Total: -3.30 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.23 -8.66 -38.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129156708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.217 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds