Wall clock time and date at job start Sat Apr 11 2020 06:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00342 * 2 1 4 4 O 1.20829 * 119.99996 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00333 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47150 * 180.02562 * 5 3 2 7 7 C 1.36941 * 119.99613 * 275.87507 * 6 5 3 8 8 H 1.07997 * 119.99789 * 175.88759 * 7 6 5 9 9 C 1.38814 * 120.00210 * 355.88252 * 7 6 5 10 10 N 1.31620 * 119.99622 * 33.61181 * 9 7 6 11 11 Si 1.86795 * 119.99995 * 213.61002 * 9 7 6 12 12 H 1.48499 * 109.47138 * 84.99766 * 11 9 7 13 13 H 1.48505 * 109.47098 * 204.99631 * 11 9 7 14 14 H 1.48504 * 109.47175 * 324.99955 * 11 9 7 15 15 C 1.46495 * 120.00407 * 95.87505 * 6 5 3 16 16 C 1.50696 * 109.47409 * 269.99847 * 15 6 5 17 17 C 1.38261 * 119.99312 * 90.00120 * 16 15 6 18 18 C 1.38216 * 120.02175 * 180.25840 * 17 16 15 19 19 C 1.38249 * 120.00617 * 359.48272 * 18 17 16 20 20 C 1.50699 * 120.00343 * 180.25724 * 19 18 17 21 21 C 1.38299 * 119.98770 * 0.53766 * 19 18 17 22 22 Br 1.89103 * 120.00832 * 179.69733 * 21 19 18 23 23 C 1.38188 * 119.99566 * 270.02213 * 16 15 6 24 24 H 1.08992 * 109.47115 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46898 * 300.00379 * 1 2 3 26 26 H 1.08997 * 109.46527 * 60.00209 * 1 2 3 27 27 H 1.09000 * 109.47537 * 59.99119 * 5 3 2 28 28 H 1.09007 * 109.46715 * 299.99682 * 5 3 2 29 29 H 0.97006 * 119.99720 * 180.02562 * 10 9 7 30 30 H 1.09002 * 109.47356 * 149.99497 * 15 6 5 31 31 H 1.09009 * 109.46904 * 30.00144 * 15 6 5 32 32 H 1.08003 * 119.99015 * 359.97372 * 17 16 15 33 33 H 1.07997 * 119.99790 * 179.74341 * 18 17 16 34 34 H 1.09004 * 109.47133 * 270.28047 * 20 19 18 35 35 H 1.09000 * 109.47182 * 30.27763 * 20 19 18 36 36 H 1.08995 * 109.47231 * 150.28155 * 20 19 18 37 37 H 1.08001 * 120.00773 * 359.97171 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.0590 3.3714 -1.1792 8 1 4.3005 4.4240 -1.1730 9 6 3.8269 2.7196 -2.3826 10 7 2.9498 1.7401 -2.4420 11 14 4.7595 3.2327 -3.9177 12 1 6.0703 2.5360 -3.9566 13 1 3.9696 2.8690 -5.1215 14 1 4.9799 4.7011 -3.8953 15 6 4.3146 3.3445 1.2624 16 6 3.0735 3.9732 1.8415 17 6 2.2692 3.2493 2.7023 18 6 1.1279 3.8235 3.2296 19 6 0.7958 5.1257 2.9049 20 6 -0.4456 5.7536 3.4845 21 6 1.5997 5.8499 2.0436 22 35 1.1413 7.6282 1.5924 23 6 2.7391 5.2729 1.5119 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 3.9559 0.7807 -0.8907 28 1 3.9564 0.7805 0.8892 29 1 2.7879 1.2844 -3.2829 30 1 5.0620 4.1168 1.0803 31 1 4.7126 2.6121 1.9649 32 1 2.5304 2.2333 2.9591 33 1 0.4978 3.2564 3.8986 34 1 -1.2918 5.5616 2.8248 35 1 -0.6455 5.3243 4.4662 36 1 -0.2973 6.8291 3.5815 37 1 3.3675 5.8383 0.8396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129156708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:52 Heat of formation + Delta-G solvation = -43.301339 kcal Electronic energy + Delta-G solvation = -22542.826170 eV Core-core repulsion = 19139.049758 eV Total energy + Delta-G solvation = -3403.776412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.80503 -40.23833 -37.76219 -36.37456 -34.59549 -33.02841 -32.76529 -30.32584 -30.02573 -28.86524 -27.63218 -26.08479 -23.62491 -23.41687 -21.65805 -21.34910 -18.82312 -18.02039 -17.33371 -16.94418 -16.78347 -16.59005 -16.42136 -15.87438 -15.54621 -15.06632 -14.77063 -14.33361 -14.25345 -13.86368 -13.65818 -13.52121 -13.24965 -13.09568 -12.76980 -12.66840 -12.52595 -12.32079 -12.24308 -12.03549 -11.99224 -11.75025 -11.64916 -11.28744 -11.08497 -10.85498 -10.35361 -9.62670 -9.40130 -9.04314 -8.02353 -5.14441 0.30473 0.49057 0.71725 1.48050 1.52341 1.57823 2.11271 2.37800 2.57360 2.78563 3.18214 3.70465 3.88004 3.95389 4.13550 4.33091 4.41176 4.44201 4.48496 4.56492 4.61139 4.68160 4.72969 4.76275 4.84337 4.94033 5.04494 5.07900 5.25764 5.28466 5.39994 5.52809 5.68715 5.75991 6.03282 6.07134 6.17475 7.01536 7.58745 7.81930 8.15473 9.08013 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.005208 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.692738 B = 5375.321012 C = 6680.298784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.390 6.390 3 C 0.462 3.538 4 O -0.528 6.528 5 C 0.177 3.823 6 N -0.568 5.568 7 C -0.253 4.253 8 H 0.077 0.923 9 C -0.037 4.037 10 N -0.913 5.913 11 Si 0.951 3.049 12 H -0.279 1.279 13 H -0.306 1.306 14 H -0.279 1.279 15 C 0.175 3.825 16 C -0.089 4.089 17 C -0.092 4.092 18 C -0.119 4.119 19 C -0.080 4.080 20 C -0.114 4.114 21 C -0.104 4.104 22 Br -0.058 7.058 23 C -0.088 4.088 24 H 0.122 0.878 25 H 0.051 0.949 26 H 0.029 0.971 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.250 0.750 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.147 0.853 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.348 3.345 13.290 14.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.307 6.307 3 C 0.304 3.696 4 O -0.414 6.414 5 C 0.048 3.952 6 N -0.287 5.287 7 C -0.382 4.382 8 H 0.094 0.906 9 C -0.233 4.233 10 N -0.559 5.559 11 Si 0.780 3.220 12 H -0.205 1.205 13 H -0.234 1.234 14 H -0.205 1.205 15 C 0.050 3.950 16 C -0.093 4.093 17 C -0.111 4.111 18 C -0.138 4.138 19 C -0.083 4.083 20 C -0.171 4.171 21 C -0.184 4.184 22 Br 0.027 6.973 23 C -0.108 4.108 24 H 0.140 0.860 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.144 0.856 33 H 0.164 0.836 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.746 4.251 12.970 14.154 hybrid contribution -0.212 0.028 -1.521 1.536 sum -3.958 4.280 11.449 12.848 Atomic orbital electron populations 1.23065 0.78009 1.03758 1.00374 1.86517 1.22790 1.35988 1.85390 1.25752 0.93940 0.80245 0.69709 1.90499 1.67261 1.37254 1.46411 1.20863 0.85192 0.86712 1.02388 1.44699 1.73771 1.07616 1.02573 1.19384 1.40490 0.94392 0.83902 0.90559 1.25249 0.98966 0.99212 0.99894 1.70168 1.30944 1.28607 1.26192 0.85527 0.79310 0.77794 0.79369 1.20517 1.23399 1.20475 1.20260 0.91867 0.96571 0.86334 1.20969 1.00445 0.92948 0.94964 1.21153 0.94626 0.99262 0.96073 1.21166 0.97244 0.94103 1.01291 1.19978 0.97096 0.94553 0.96651 1.20933 0.93388 1.01300 1.01471 1.21777 0.99779 0.92390 1.04407 1.96528 1.93397 1.14327 1.93014 1.20899 0.95896 0.95844 0.98207 0.86000 0.93029 0.95237 0.88809 0.89057 0.94042 0.91093 0.89473 0.85599 0.83554 0.91050 0.89141 0.90670 0.87006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.45 10.56 113.37 1.20 2.64 16 2 O -0.39 -16.30 10.56 -51.38 -0.54 -16.84 16 3 C 0.46 21.54 6.12 71.24 0.44 21.97 16 4 O -0.53 -27.76 14.34 21.95 0.31 -27.44 16 5 C 0.18 7.76 5.64 85.63 0.48 8.24 16 6 N -0.57 -25.66 2.06 -710.68 -1.47 -27.12 16 7 C -0.25 -13.06 9.47 84.03 0.80 -12.26 16 8 H 0.08 3.98 8.01 -2.91 -0.02 3.96 16 9 C -0.04 -1.99 4.88 84.86 0.41 -1.58 16 10 N -0.91 -50.96 9.26 21.65 0.20 -50.76 16 11 Si 0.95 43.90 29.66 68.60 2.03 45.93 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 13 H -0.31 -14.66 7.11 99.48 0.71 -13.95 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 15 C 0.17 6.37 5.83 85.63 0.50 6.87 16 16 C -0.09 -3.31 4.75 -19.87 -0.09 -3.40 16 17 C -0.09 -3.07 8.83 22.27 0.20 -2.87 16 18 C -0.12 -3.63 9.70 22.27 0.22 -3.41 16 19 C -0.08 -2.51 5.88 -19.85 -0.12 -2.63 16 20 C -0.11 -2.73 9.55 71.24 0.68 -2.05 16 21 C -0.10 -3.65 6.22 22.31 0.14 -3.51 16 22 Br -0.06 -1.77 31.79 -20.37 -0.65 -2.41 16 23 C -0.09 -3.36 9.44 22.28 0.21 -3.15 16 24 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 25 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 26 H 0.03 1.13 8.13 -2.39 -0.02 1.11 16 27 H 0.09 4.57 6.14 -2.39 -0.01 4.56 16 28 H 0.09 3.21 7.83 -2.38 -0.02 3.19 16 29 H 0.25 13.87 8.31 -92.70 -0.77 13.10 16 30 H 0.07 2.49 7.98 -2.39 -0.02 2.47 16 31 H 0.09 2.59 7.80 -2.38 -0.02 2.58 16 32 H 0.13 3.76 8.06 -2.91 -0.02 3.73 16 33 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 34 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.09 1.68 8.09 -2.39 -0.02 1.66 16 36 H 0.07 1.72 6.65 -2.39 -0.02 1.71 16 37 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -65.18 333.41 6.02 -59.16 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 1.07 Total: 14.63 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 5.06 Total: 4.87 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -1.27 Total: -77.88 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -0.23 Total: -44.29 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 35 Polarization: -1.77 SS G_CDS: -0.65 Total: -2.41 kcal Total: -65.18 6.02 -59.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129156708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.856 kcal (2) G-P(sol) polarization free energy of solvation -65.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds