Wall clock time and date at job start Sat Apr 11 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86801 * 120.00079 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00040 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99888 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99791 * 3 2 1 7 7 C 1.38981 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00389 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99998 * 359.72332 * 7 2 1 10 10 C 1.36502 * 126.06875 * 180.27901 * 9 7 2 11 11 C 1.35695 * 107.50419 * 179.97438 * 10 9 7 12 12 N 1.40534 * 126.08595 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00244 * 180.02562 * 12 11 10 14 14 O 1.21733 * 119.99960 * 359.97438 * 13 12 11 15 15 C 1.46563 * 120.00266 * 179.97438 * 13 12 11 16 16 C 1.36668 * 125.45686 * 179.97438 * 15 13 12 17 17 C 1.37525 * 113.28817 * 180.02562 * 16 15 13 18 18 Br 1.89101 * 122.45698 * 179.97438 * 17 16 15 19 19 C 1.33859 * 115.08426 * 359.97438 * 17 16 15 20 20 S 1.70615 * 110.95986 * 359.72685 * 19 17 16 21 21 C 1.40669 * 107.82867 * 359.97438 * 11 10 9 22 22 N 1.30900 * 108.38951 * 359.74466 * 21 11 10 23 23 H 0.97009 * 120.00129 * 0.02562 * 1 2 3 24 24 H 1.07999 * 126.24618 * 359.95329 * 10 9 7 25 25 H 0.97005 * 119.99502 * 359.97438 * 12 11 10 26 26 H 1.08002 * 123.35483 * 0.03849 * 16 15 13 27 27 H 1.07992 * 124.52170 * 180.02562 * 19 17 16 28 28 H 1.08004 * 125.80395 * 180.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.4945 2.0464 -1.4001 5 1 1.4444 2.6527 0.7000 6 1 3.5445 1.4402 0.7001 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2037 -0.0001 9 7 1.3213 -2.3929 0.0047 10 6 1.8750 -3.6405 0.0102 11 6 0.8577 -4.5385 0.0147 12 7 0.9888 -5.9377 0.0205 13 6 -0.1104 -6.7175 0.0241 14 8 -1.2168 -6.2099 0.0226 15 6 0.0262 -8.1768 0.0296 16 6 -1.0082 -9.0699 0.0340 17 6 -0.5942 -10.3814 0.0393 18 35 -1.8103 -11.8294 0.0469 19 6 0.7327 -10.5576 0.0387 20 16 1.5475 -9.0586 0.0237 21 6 -0.3514 -3.8196 0.0124 22 7 -0.0715 -2.5409 0.0124 23 1 -0.4851 0.8401 -0.0004 24 1 2.9302 -3.8708 0.0105 25 1 1.8705 -6.3422 0.0213 26 1 -2.0472 -8.7752 0.0332 27 1 1.2223 -11.5202 0.0419 28 1 -1.3421 -4.2496 0.0153 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139329476.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:56 Heat of formation + Delta-G solvation = 67.115636 kcal Electronic energy + Delta-G solvation = -17868.185608 eV Core-core repulsion = 14672.576668 eV Total energy + Delta-G solvation = -3195.608940 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 340.957 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.77332 -40.44114 -38.73720 -36.00652 -35.03952 -32.53563 -32.16755 -30.67174 -29.46798 -27.08019 -25.79946 -23.07790 -22.53450 -21.37390 -20.29229 -19.86989 -18.96728 -17.53687 -17.31638 -16.72984 -16.37652 -16.33644 -15.61990 -15.21657 -14.95788 -14.72625 -14.46029 -14.14045 -13.51221 -13.43117 -13.31841 -12.91655 -12.86084 -12.21802 -12.08011 -11.95875 -11.77720 -11.31224 -11.05255 -11.02786 -10.82632 -10.13799 -10.05991 -9.52648 -8.58292 -8.47211 -6.25183 -0.70561 0.06298 0.37247 0.94380 1.15652 1.29860 1.41215 1.59199 1.69930 1.96685 1.97510 2.22835 2.54393 2.88525 3.09349 3.70024 3.94917 4.09511 4.40089 4.51510 4.56141 4.79652 4.90845 4.99608 5.06654 5.25898 5.35177 5.94367 6.27003 6.56581 6.71677 7.19637 7.44519 7.65139 8.52125 Molecular weight = 340.96amu Principal moments of inertia in cm(-1) A = 0.048094 B = 0.002209 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.053451 B =12671.784173 C =13243.983921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C -0.006 4.006 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.243 1.243 7 C -0.353 4.353 8 H 0.144 0.856 9 N -0.165 5.165 10 C -0.076 4.076 11 C -0.049 4.049 12 N -0.608 5.608 13 C 0.572 3.428 14 O -0.566 6.566 15 C -0.282 4.282 16 C -0.044 4.044 17 C -0.134 4.134 18 Br -0.020 7.020 19 C -0.191 4.191 20 S 0.323 5.677 21 C -0.056 4.056 22 N -0.309 5.309 23 H 0.277 0.723 24 H 0.192 0.808 25 H 0.415 0.585 26 H 0.148 0.852 27 H 0.213 0.787 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.560 -24.197 0.103 25.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.218 4.218 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.166 1.166 7 C -0.484 4.484 8 H 0.161 0.839 9 N 0.066 4.934 10 C -0.226 4.226 11 C -0.155 4.155 12 N -0.252 5.252 13 C 0.360 3.640 14 O -0.447 6.447 15 C -0.403 4.403 16 C -0.079 4.079 17 C -0.227 4.227 18 Br 0.063 6.937 19 C -0.332 4.332 20 S 0.590 5.410 21 C -0.232 4.232 22 N -0.141 5.141 23 H 0.086 0.914 24 H 0.209 0.791 25 H 0.252 0.748 26 H 0.165 0.835 27 H 0.230 0.770 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.225 -22.634 0.097 23.475 hybrid contribution -0.947 -0.419 0.000 1.035 sum 5.278 -23.053 0.096 23.650 Atomic orbital electron populations 1.70402 1.08498 1.29174 1.37136 1.26901 0.96453 1.04408 0.94060 0.84579 0.78320 0.73975 0.79246 1.18884 1.20311 1.16575 1.20676 0.93078 0.80783 1.53905 0.83868 1.44866 1.03605 1.04853 1.40043 1.21999 0.98825 0.84035 1.17759 1.17268 0.93152 0.82923 1.22179 1.42182 1.08888 1.02923 1.71166 1.17239 0.84043 0.85298 0.77418 1.90723 1.27157 1.74788 1.52043 1.24332 1.00619 0.95677 1.19700 1.20590 1.00657 0.90209 0.96406 1.20409 0.94395 0.93016 1.14839 1.96721 1.59210 1.39733 1.98013 1.25822 0.96440 1.06750 1.04185 1.82828 1.02807 0.91798 1.63605 1.24166 0.98991 0.90947 1.09061 1.78170 0.92084 1.16383 1.27505 0.91362 0.79076 0.74764 0.83472 0.77038 0.81614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.52 11.81 21.66 0.26 -47.27 15 2 C -0.01 -0.33 5.50 84.95 0.47 0.13 15 3 Si 1.02 38.07 29.55 68.60 2.03 40.10 15 4 H -0.26 -9.49 7.11 99.48 0.71 -8.79 15 5 H -0.28 -10.34 7.11 99.48 0.71 -9.64 15 6 H -0.24 -8.14 7.11 99.48 0.71 -7.44 15 7 C -0.35 -18.46 10.25 84.01 0.86 -17.60 15 8 H 0.14 6.40 7.83 -2.91 -0.02 6.38 15 9 N -0.17 -9.10 3.74 -190.00 -0.71 -9.81 15 10 C -0.08 -3.44 11.49 83.38 0.96 -2.48 15 11 C -0.05 -2.26 6.90 37.75 0.26 -2.00 15 12 N -0.61 -21.25 5.46 -307.58 -1.68 -22.93 15 13 C 0.57 20.72 7.75 86.41 0.67 21.39 15 14 O -0.57 -25.82 13.98 -4.45 -0.06 -25.88 15 15 C -0.28 -7.35 6.45 24.08 0.16 -7.19 15 16 C -0.04 -1.10 9.86 21.73 0.21 -0.89 15 17 C -0.13 -2.56 6.15 21.10 0.13 -2.43 15 18 Br -0.02 -0.35 33.86 -20.37 -0.69 -1.04 15 19 C -0.19 -2.60 10.74 66.82 0.72 -1.88 15 20 S 0.32 4.77 22.15 -56.49 -1.25 3.52 15 21 C -0.06 -3.11 10.85 85.43 0.93 -2.18 15 22 N -0.31 -18.73 10.39 -56.45 -0.59 -19.32 15 23 H 0.28 14.67 8.31 -92.70 -0.77 13.90 15 24 H 0.19 6.67 8.06 -2.91 -0.02 6.65 15 25 H 0.42 10.55 7.94 -92.70 -0.74 9.82 15 26 H 0.15 4.00 8.06 -2.91 -0.02 3.98 15 27 H 0.21 1.42 8.06 -2.91 -0.02 1.40 15 28 H 0.17 9.28 5.91 -2.91 -0.02 9.26 15 Total: -1.00 -75.42 292.37 3.17 -72.25 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.50 Total: 25.51 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 5.36 Total: -15.13 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -2.72 Total: -99.33 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.06 Total: -25.88 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.25 Total: 3.52 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -0.69 Total: -1.04 kcal Total: -75.42 3.17 -72.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139329476.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.366 kcal (2) G-P(sol) polarization free energy of solvation -75.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds