Wall clock time and date at job start Sat Apr 11 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38424 * 119.83362 * 2 1 4 4 C 1.37897 * 120.17515 * 180.02562 * 3 2 1 5 5 C 1.39672 * 119.85589 * 359.97437 * 4 3 2 6 6 C 1.47666 * 120.15400 * 179.97438 * 5 4 3 7 7 O 1.21482 * 120.00092 * 180.02562 * 6 5 4 8 8 O 1.34718 * 120.00257 * 0.02562 * 6 5 4 9 9 C 1.45204 * 117.00220 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47155 * 180.02562 * 9 8 6 11 11 O 1.21292 * 120.00161 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99860 * 180.02562 * 10 9 8 13 13 C 1.37098 * 120.00086 * 179.97438 * 12 10 9 14 14 H 1.08005 * 119.99599 * 0.02562 * 13 12 10 15 15 C 1.38945 * 120.00239 * 179.97438 * 13 12 10 16 16 N 1.31406 * 120.00350 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00025 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47251 * 89.99511 * 17 15 13 19 19 H 1.48500 * 109.47356 * 209.99902 * 17 15 13 20 20 H 1.48498 * 109.46960 * 330.00001 * 17 15 13 21 21 C 1.39717 * 119.68710 * 0.02562 * 5 4 3 22 22 Br 1.89100 * 120.08993 * 180.02562 * 21 5 4 23 23 C 1.38096 * 119.81544 * 0.27510 * 21 5 4 24 24 H 1.09010 * 109.46953 * 90.00298 * 1 2 3 25 25 H 1.09003 * 109.47079 * 209.99450 * 1 2 3 26 26 H 1.08994 * 109.47536 * 329.99973 * 1 2 3 27 27 H 1.07997 * 119.91425 * 359.97257 * 3 2 1 28 28 H 1.07999 * 120.07022 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.47329 * 300.00529 * 9 8 6 30 30 H 1.09004 * 109.46863 * 59.99927 * 9 8 6 31 31 H 0.97002 * 120.00144 * 359.97438 * 12 10 9 32 32 H 0.96997 * 120.00744 * 179.97438 * 16 15 13 33 33 H 1.08000 * 119.92919 * 179.70096 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2008 0.0000 4 6 3.5746 1.2090 -0.0005 5 6 4.2771 0.0018 -0.0005 6 6 5.7538 0.0030 -0.0017 7 8 6.3620 -1.0486 -0.0021 8 8 6.4265 1.1701 -0.0022 9 6 7.8766 1.0952 -0.0027 10 6 8.4516 2.4882 -0.0026 11 8 7.7120 3.4496 -0.0026 12 7 9.7876 2.6657 -0.0036 13 6 10.3107 3.9330 -0.0040 14 1 9.6522 4.7890 -0.0032 15 6 11.6881 4.1161 -0.0045 16 7 12.1895 5.3307 -0.0054 17 14 12.8271 2.6355 -0.0052 18 1 13.1284 2.2434 -1.4055 19 1 14.0902 2.9823 0.6944 20 1 12.1682 1.5037 0.6948 21 6 3.5761 -1.2067 -0.0005 22 35 4.5157 -2.8478 0.0002 23 6 2.1952 -1.1995 -0.0063 24 1 -0.3633 -0.0001 -1.0278 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6516 2.1337 -0.0004 28 1 4.1102 2.1469 -0.0010 29 1 8.2133 0.5635 0.8871 30 1 8.2126 0.5631 -0.8928 31 1 10.3791 1.8969 -0.0040 32 1 13.1510 5.4586 -0.0054 33 1 1.6514 -2.1327 -0.0112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754973611.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:13 Heat of formation + Delta-G solvation = -76.957389 kcal Electronic energy + Delta-G solvation = -20389.094767 eV Core-core repulsion = 16848.025824 eV Total energy + Delta-G solvation = -3541.068943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.010 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.63568 -39.30012 -38.23795 -36.17427 -34.05898 -33.54015 -32.38366 -31.79360 -29.60785 -29.01390 -27.64801 -24.56581 -23.02637 -22.75983 -20.78400 -19.63889 -18.60844 -18.15366 -16.82814 -16.40125 -15.87900 -15.54975 -15.40405 -15.01775 -14.53791 -14.48360 -14.01441 -13.85994 -13.60303 -12.93857 -12.88092 -12.74072 -12.30873 -12.26510 -12.19680 -11.97975 -11.46074 -11.28814 -11.25870 -10.97727 -10.64377 -10.47686 -10.05003 -9.67189 -9.30284 -9.24005 -9.00932 -8.66322 -8.28965 -6.38934 -3.91824 0.30302 0.83703 1.39132 2.41849 2.55794 2.99660 3.04279 3.12823 3.35465 3.56517 4.04290 4.22482 4.39445 4.44391 4.71642 4.75171 4.90662 5.04455 5.11989 5.16840 5.26422 5.36800 5.45237 5.56863 5.63196 5.68344 5.75890 5.84376 6.05554 6.37478 6.47774 7.45163 7.78855 8.01197 8.48179 8.83955 9.30313 9.65911 10.73347 Molecular weight = 341.01amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.002899 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.193432 B = 9655.393591 C =11047.139195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.050 4.050 3 C -0.121 4.121 4 C -0.046 4.046 5 C -0.104 4.104 6 C 0.493 3.507 7 O -0.483 6.483 8 O -0.321 6.321 9 C 0.060 3.940 10 C 0.448 3.552 11 O -0.558 6.558 12 N -0.579 5.579 13 C -0.308 4.308 14 H 0.122 0.878 15 C 0.045 3.955 16 N -0.875 5.875 17 Si 0.879 3.121 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.268 1.268 21 C -0.036 4.036 22 Br -0.012 7.012 23 C -0.109 4.109 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.139 0.861 28 H 0.155 0.845 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.373 0.627 32 H 0.275 0.725 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.681 -17.241 -0.036 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.051 4.051 3 C -0.140 4.140 4 C -0.065 4.065 5 C -0.107 4.107 6 C 0.337 3.663 7 O -0.372 6.372 8 O -0.235 6.235 9 C -0.017 4.017 10 C 0.233 3.767 11 O -0.440 6.440 12 N -0.219 5.219 13 C -0.436 4.436 14 H 0.140 0.860 15 C -0.159 4.159 16 N -0.514 5.514 17 Si 0.705 3.295 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.193 1.193 21 C -0.116 4.116 22 Br 0.075 6.925 23 C -0.129 4.129 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.157 0.843 28 H 0.172 0.828 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.206 0.794 32 H 0.086 0.914 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -21.403 -17.364 -0.036 27.561 hybrid contribution 1.113 -0.779 0.013 1.359 sum -20.290 -18.143 -0.022 27.219 Atomic orbital electron populations 1.20894 0.90052 1.03541 1.03062 1.20213 0.96768 0.92551 0.95559 1.21231 0.93894 0.98237 1.00595 1.21696 0.94310 0.97840 0.92656 1.18884 0.90161 0.93480 1.08178 1.21050 0.88731 0.82399 0.74160 1.90999 1.69884 1.31654 1.44646 1.86569 1.21201 1.32469 1.83302 1.22755 0.76708 0.98541 1.03734 1.19182 0.83135 0.88905 0.85430 1.90595 1.58353 1.41432 1.53593 1.42033 1.04710 1.08645 1.66552 1.19420 0.91976 0.83560 1.48653 0.86008 1.25032 0.96677 0.96901 0.97262 1.69607 1.13319 1.20105 1.48418 0.86684 0.81471 0.82283 0.79112 1.19397 1.19958 1.19315 1.21984 0.94762 0.92046 1.02841 1.96801 1.76677 1.22163 1.96827 1.20925 0.91247 0.98958 1.01748 0.90322 0.90965 0.90728 0.84341 0.82783 0.89293 0.89275 0.79362 0.91388 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 10.00 36.01 0.36 -0.21 16 2 C -0.05 -0.40 5.89 -104.53 -0.62 -1.01 16 3 C -0.12 -1.07 9.68 -39.64 -0.38 -1.45 16 4 C -0.05 -0.54 9.62 -39.17 -0.38 -0.91 16 5 C -0.10 -1.41 5.88 -104.96 -0.62 -2.02 16 6 C 0.49 7.98 7.89 34.58 0.27 8.25 16 7 O -0.48 -8.22 13.27 -19.25 -0.26 -8.47 16 8 O -0.32 -5.80 9.01 -47.22 -0.43 -6.22 16 9 C 0.06 1.09 5.95 36.00 0.21 1.30 16 10 C 0.45 10.35 7.86 -10.99 -0.09 10.26 16 11 O -0.56 -15.14 16.08 -14.11 -0.23 -15.37 16 12 N -0.58 -13.75 5.09 -10.96 -0.06 -13.80 16 13 C -0.31 -8.60 10.16 -14.93 -0.15 -8.75 16 14 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 15 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 16 N -0.88 -25.15 13.96 55.50 0.77 -24.37 16 17 Si 0.88 19.10 27.74 -169.99 -4.71 14.38 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 21 C -0.04 -0.43 6.26 -39.08 -0.24 -0.68 16 22 Br -0.01 -0.14 30.40 -68.01 -2.07 -2.21 16 23 C -0.11 -1.00 9.42 -39.61 -0.37 -1.37 16 24 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 25 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 26 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 27 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.15 1.87 7.61 -52.49 -0.40 1.47 16 29 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 32 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 316.14 15.07 4.76 4.76 Total: -1.00 -33.14 316.14 -7.45 -40.59 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -3.14 Total: 6.19 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -2.10 Total: 4.53 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.72 Total: -38.18 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.91 Total: -30.07 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.71 Total: 14.38 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -2.07 Total: -2.21 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.14 -7.45 -40.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754973611.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.367 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds