Wall clock time and date at job start Sat Apr 11 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38424 * 119.83362 * 2 1 4 4 C 1.37897 * 120.17515 * 180.02562 * 3 2 1 5 5 C 1.39672 * 119.85589 * 359.97437 * 4 3 2 6 6 C 1.47666 * 120.15400 * 179.97438 * 5 4 3 7 7 O 1.21482 * 120.00092 * 180.02562 * 6 5 4 8 8 O 1.34718 * 120.00257 * 0.02562 * 6 5 4 9 9 C 1.45204 * 117.00220 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47155 * 180.02562 * 9 8 6 11 11 O 1.21292 * 120.00161 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99860 * 180.02562 * 10 9 8 13 13 C 1.37098 * 120.00086 * 179.97438 * 12 10 9 14 14 H 1.08005 * 119.99599 * 0.02562 * 13 12 10 15 15 C 1.38945 * 120.00239 * 179.97438 * 13 12 10 16 16 N 1.31406 * 120.00350 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00025 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47251 * 89.99511 * 17 15 13 19 19 H 1.48500 * 109.47356 * 209.99902 * 17 15 13 20 20 H 1.48498 * 109.46960 * 330.00001 * 17 15 13 21 21 C 1.39717 * 119.68710 * 0.02562 * 5 4 3 22 22 Br 1.89100 * 120.08993 * 180.02562 * 21 5 4 23 23 C 1.38096 * 119.81544 * 0.27510 * 21 5 4 24 24 H 1.09010 * 109.46953 * 90.00298 * 1 2 3 25 25 H 1.09003 * 109.47079 * 209.99450 * 1 2 3 26 26 H 1.08994 * 109.47536 * 329.99973 * 1 2 3 27 27 H 1.07997 * 119.91425 * 359.97257 * 3 2 1 28 28 H 1.07999 * 120.07022 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.47329 * 300.00529 * 9 8 6 30 30 H 1.09004 * 109.46863 * 59.99927 * 9 8 6 31 31 H 0.97002 * 120.00144 * 359.97438 * 12 10 9 32 32 H 0.96997 * 120.00744 * 179.97438 * 16 15 13 33 33 H 1.08000 * 119.92919 * 179.70096 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2008 0.0000 4 6 3.5746 1.2090 -0.0005 5 6 4.2771 0.0018 -0.0005 6 6 5.7538 0.0030 -0.0017 7 8 6.3620 -1.0486 -0.0021 8 8 6.4265 1.1701 -0.0022 9 6 7.8766 1.0952 -0.0027 10 6 8.4516 2.4882 -0.0026 11 8 7.7120 3.4496 -0.0026 12 7 9.7876 2.6657 -0.0036 13 6 10.3107 3.9330 -0.0040 14 1 9.6522 4.7890 -0.0032 15 6 11.6881 4.1161 -0.0045 16 7 12.1895 5.3307 -0.0054 17 14 12.8271 2.6355 -0.0052 18 1 13.1284 2.2434 -1.4055 19 1 14.0902 2.9823 0.6944 20 1 12.1682 1.5037 0.6948 21 6 3.5761 -1.2067 -0.0005 22 35 4.5157 -2.8478 0.0002 23 6 2.1952 -1.1995 -0.0063 24 1 -0.3633 -0.0001 -1.0278 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6516 2.1337 -0.0004 28 1 4.1102 2.1469 -0.0010 29 1 8.2133 0.5635 0.8871 30 1 8.2126 0.5631 -0.8928 31 1 10.3791 1.8969 -0.0040 32 1 13.1510 5.4586 -0.0054 33 1 1.6514 -2.1327 -0.0112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754973611.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:13 Heat of formation + Delta-G solvation = -97.843898 kcal Electronic energy + Delta-G solvation = -20390.000474 eV Core-core repulsion = 16848.025824 eV Total energy + Delta-G solvation = -3541.974650 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.010 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.81594 -40.47184 -39.85139 -37.52559 -36.09461 -34.29433 -33.87665 -33.21926 -30.48758 -30.36867 -28.56244 -26.43855 -23.93424 -23.67429 -21.76323 -21.55412 -20.53309 -19.32147 -18.13386 -17.75670 -17.55698 -16.84156 -16.45156 -16.20731 -15.89458 -15.72476 -15.15421 -14.86182 -14.69166 -14.62556 -14.23229 -14.06151 -13.72793 -13.27644 -13.13773 -13.00638 -12.78460 -12.47201 -12.34211 -12.16967 -12.01174 -11.93681 -11.74426 -11.59828 -10.63823 -10.35284 -10.33415 -10.01478 -9.82823 -8.47101 -6.10154 -0.59089 0.05592 0.50841 1.26064 1.31048 1.32502 1.36041 1.43933 1.74266 2.19141 2.49452 2.76635 3.07302 3.47085 3.64454 3.79965 3.88375 4.07933 4.12236 4.12589 4.12746 4.26629 4.65637 4.82044 4.87526 4.92581 5.06342 5.20849 5.22869 5.39169 5.46435 5.67632 5.84000 6.43963 6.57299 6.75962 7.24335 7.75727 8.69467 Molecular weight = 341.01amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.002899 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.193432 B = 9655.393591 C =11047.139195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.035 4.035 3 C -0.117 4.117 4 C -0.057 4.057 5 C -0.133 4.133 6 C 0.493 3.507 7 O -0.496 6.496 8 O -0.340 6.340 9 C 0.070 3.930 10 C 0.450 3.550 11 O -0.607 6.607 12 N -0.576 5.576 13 C -0.333 4.333 14 H 0.062 0.938 15 C -0.007 4.007 16 N -0.925 5.925 17 Si 0.960 3.040 18 H -0.255 1.255 19 H -0.271 1.271 20 H -0.232 1.232 21 C -0.047 4.047 22 Br -0.022 7.022 23 C -0.105 4.105 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.166 0.834 28 H 0.140 0.860 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.393 0.607 32 H 0.282 0.718 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.043 -20.148 -0.006 30.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.036 4.036 3 C -0.135 4.135 4 C -0.076 4.076 5 C -0.136 4.136 6 C 0.337 3.663 7 O -0.385 6.385 8 O -0.256 6.256 9 C -0.007 4.007 10 C 0.237 3.763 11 O -0.491 6.491 12 N -0.218 5.218 13 C -0.462 4.462 14 H 0.080 0.920 15 C -0.207 4.207 16 N -0.564 5.564 17 Si 0.780 3.220 18 H -0.179 1.179 19 H -0.196 1.196 20 H -0.156 1.156 21 C -0.127 4.127 22 Br 0.064 6.936 23 C -0.125 4.125 24 H 0.111 0.889 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.183 0.817 28 H 0.157 0.843 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.229 0.771 32 H 0.092 0.908 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -22.783 -20.294 -0.005 30.511 hybrid contribution 1.329 0.231 -0.001 1.349 sum -21.453 -20.063 -0.006 29.373 Atomic orbital electron populations 1.21013 0.87152 1.04983 1.04318 1.20644 0.98653 0.91558 0.92768 1.21555 0.92710 0.99999 0.99268 1.21680 0.95663 0.96703 0.93576 1.18877 0.88609 0.94861 1.11288 1.21525 0.89735 0.81512 0.73484 1.90976 1.70343 1.31624 1.45593 1.86570 1.21053 1.34067 1.83887 1.22601 0.77199 0.94649 1.06277 1.20118 0.82624 0.90639 0.82944 1.90571 1.59549 1.43882 1.55129 1.41809 1.05387 1.07736 1.66820 1.19006 0.92124 0.83921 1.51108 0.92011 1.26067 0.98063 1.00970 0.95578 1.69771 1.14288 1.23323 1.49058 0.85434 0.78296 0.78141 0.80178 1.17925 1.19607 1.15582 1.22125 0.95786 0.90991 1.03785 1.96775 1.77289 1.22583 1.96910 1.21284 0.90114 1.00623 1.00479 0.88899 0.89522 0.89409 0.81681 0.84263 0.86651 0.86544 0.77107 0.90789 0.81762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.00 71.24 0.71 0.08 16 2 C -0.04 -0.45 5.89 -19.81 -0.12 -0.57 16 3 C -0.12 -1.82 9.68 22.23 0.22 -1.61 16 4 C -0.06 -1.32 9.62 22.54 0.22 -1.10 16 5 C -0.13 -3.57 5.88 -20.08 -0.12 -3.69 16 6 C 0.49 15.88 7.89 70.31 0.55 16.43 16 7 O -0.50 -16.51 13.27 19.90 0.26 -16.24 16 8 O -0.34 -12.39 9.01 -49.89 -0.45 -12.84 16 9 C 0.07 2.45 5.95 71.23 0.42 2.87 16 10 C 0.45 21.07 7.86 87.66 0.69 21.76 16 11 O -0.61 -34.52 16.08 15.73 0.25 -34.27 16 12 N -0.58 -27.38 5.09 -306.99 -1.56 -28.94 16 13 C -0.33 -19.35 10.16 84.04 0.85 -18.50 16 14 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 15 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 16 N -0.92 -54.81 13.96 21.66 0.30 -54.51 16 17 Si 0.96 38.29 27.74 68.60 1.90 40.20 16 18 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 19 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 20 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 21 C -0.05 -1.06 6.26 22.59 0.14 -0.92 16 22 Br -0.02 -0.54 30.40 -20.37 -0.62 -1.16 16 23 C -0.11 -1.65 9.42 22.25 0.21 -1.44 16 24 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 25 H 0.09 0.28 8.08 -2.39 -0.02 0.26 16 26 H 0.09 0.31 8.08 -2.39 -0.02 0.29 16 27 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 28 H 0.14 3.55 7.61 -2.91 -0.02 3.53 16 29 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 30 H 0.12 3.48 8.14 -2.38 -0.02 3.46 16 31 H 0.39 15.41 5.76 -92.71 -0.53 14.88 16 32 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 33 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -77.27 316.14 4.91 -72.36 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.57 Total: 21.98 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 4.25 Total: 13.42 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -1.26 Total: -83.45 kcal Atomic # 8 Polarization: -63.42 SS G_CDS: 0.07 Total: -63.35 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 1.90 Total: 40.20 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -0.62 Total: -1.16 kcal Total: -77.27 4.91 -72.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754973611.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.486 kcal (2) G-P(sol) polarization free energy of solvation -77.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds