Wall clock time and date at job start Sat Apr 11 2020 06:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38373 * 119.91894 * 2 1 4 4 C 1.38428 * 120.29282 * 180.02562 * 3 2 1 5 5 Br 1.89098 * 119.93575 * 180.02562 * 4 3 2 6 6 C 1.38065 * 120.12968 * 359.97438 * 4 3 2 7 7 C 1.39591 * 119.83697 * 0.02562 * 6 4 3 8 8 C 1.47727 * 120.14395 * 179.97438 * 7 6 4 9 9 O 1.21470 * 120.00063 * 180.02562 * 8 7 6 10 10 O 1.34705 * 120.00073 * 0.02562 * 8 7 6 11 11 C 1.45203 * 117.00117 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47125 * 180.02562 * 11 10 8 13 13 O 1.21291 * 120.00295 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99891 * 180.02562 * 12 11 10 15 15 C 1.37102 * 120.00074 * 179.97438 * 14 12 11 16 16 H 1.08004 * 120.00137 * 359.97438 * 15 14 12 17 17 C 1.38954 * 120.00012 * 179.97438 * 15 14 12 18 18 N 1.31407 * 119.99991 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99754 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47242 * 60.00028 * 19 17 15 21 21 H 1.48497 * 109.46870 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47263 * 300.00230 * 19 17 15 23 23 C 1.37933 * 119.91873 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.47026 * 90.00453 * 1 2 3 25 25 H 1.09004 * 109.46910 * 210.00383 * 1 2 3 26 26 H 1.08994 * 109.46993 * 330.00041 * 1 2 3 27 27 H 1.07996 * 119.84970 * 0.02562 * 3 2 1 28 28 H 1.07998 * 120.07665 * 179.72530 * 6 4 3 29 29 H 1.08996 * 109.46971 * 299.99661 * 11 10 8 30 30 H 1.08993 * 109.47276 * 59.99936 * 11 10 8 31 31 H 0.96996 * 120.00304 * 359.97438 * 14 12 11 32 32 H 0.96996 * 119.99583 * 180.02562 * 18 17 15 33 33 H 1.07995 * 120.06561 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1993 0.0000 4 6 3.5814 1.2084 -0.0005 5 35 4.5143 2.8532 0.0002 6 6 4.2822 0.0188 -0.0005 7 6 3.5915 -1.1942 -0.0005 8 6 4.3345 -2.4710 -0.0011 9 8 3.7308 -3.5251 -0.0016 10 8 5.6815 -2.4664 -0.0011 11 6 6.3452 -3.7579 -0.0011 12 6 7.8385 -3.5553 -0.0005 13 8 8.2983 -2.4330 -0.0005 14 7 8.6631 -4.6213 -0.0009 15 6 10.0217 -4.4371 -0.0008 16 1 10.4312 -3.4376 -0.0009 17 6 10.8719 -5.5361 -0.0007 18 7 10.3738 -6.7521 -0.0012 19 14 12.7230 -5.2850 -0.0014 20 1 13.1198 -4.5244 1.2107 21 1 13.4016 -6.6058 -0.0018 22 1 13.1190 -4.5252 -1.2142 23 6 2.1950 -1.1955 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5138 27 1 1.6534 2.1324 0.0004 28 1 5.3622 0.0268 -0.0054 29 1 6.0543 -4.3159 0.8889 30 1 6.0542 -4.3159 -0.8910 31 1 8.2955 -5.5189 -0.0012 32 1 10.9673 -7.5193 -0.0007 33 1 1.6547 -2.1306 0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766795136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:25 Heat of formation + Delta-G solvation = -117.255621 kcal Electronic energy + Delta-G solvation = -20174.664069 eV Core-core repulsion = 16631.847663 eV Total energy + Delta-G solvation = -3542.816405 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.010 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.88601 -40.44131 -39.83001 -37.58430 -36.05396 -34.35821 -33.50811 -33.37398 -30.60849 -30.09567 -28.01356 -26.80554 -25.38426 -22.66147 -21.89915 -21.45955 -20.09794 -19.02032 -18.26546 -17.79846 -17.65477 -17.09221 -16.52430 -16.46770 -15.83188 -15.82374 -15.28689 -14.89452 -14.72914 -14.31579 -14.02481 -13.73291 -13.56404 -13.44304 -13.20331 -12.94731 -12.78533 -12.50201 -12.33361 -12.13675 -11.94768 -11.88351 -11.85990 -11.58750 -11.33560 -10.54238 -10.13729 -10.11951 -9.81829 -8.53654 -6.04422 -0.59115 -0.05876 0.47348 1.23489 1.24409 1.36629 1.43081 1.54439 1.85078 2.28228 2.42894 2.95349 3.11801 3.41724 3.60174 3.88140 3.93391 4.02012 4.07245 4.11695 4.14797 4.19318 4.52192 4.70297 4.87354 4.89731 5.03754 5.12695 5.18754 5.32217 5.35583 5.57654 5.86988 6.40030 6.50974 7.01138 7.37658 7.91210 8.63186 Molecular weight = 341.01amu Principal moments of inertia in cm(-1) A = 0.016093 B = 0.002637 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.508721 B =10617.104362 C =12336.167584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.082 4.082 3 C -0.048 4.048 4 C -0.107 4.107 5 Br -0.038 7.038 6 C -0.052 4.052 7 C -0.128 4.128 8 C 0.507 3.493 9 O -0.522 6.522 10 O -0.339 6.339 11 C 0.071 3.929 12 C 0.436 3.564 13 O -0.617 6.617 14 N -0.556 5.556 15 C -0.339 4.339 16 H 0.084 0.916 17 C -0.008 4.008 18 N -0.915 5.915 19 Si 0.998 3.002 20 H -0.270 1.270 21 H -0.269 1.269 22 H -0.270 1.270 23 C -0.042 4.042 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.169 0.831 28 H 0.133 0.867 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.400 0.600 32 H 0.281 0.719 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.757 15.776 -0.016 26.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.083 4.083 3 C -0.068 4.068 4 C -0.187 4.187 5 Br 0.048 6.952 6 C -0.072 4.072 7 C -0.130 4.130 8 C 0.353 3.647 9 O -0.413 6.413 10 O -0.254 6.254 11 C -0.006 4.006 12 C 0.223 3.777 13 O -0.504 6.504 14 N -0.194 5.194 15 C -0.468 4.468 16 H 0.102 0.898 17 C -0.209 4.209 18 N -0.555 5.555 19 Si 0.820 3.180 20 H -0.195 1.195 21 H -0.193 1.193 22 H -0.195 1.195 23 C -0.061 4.061 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.187 0.813 28 H 0.151 0.849 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.235 0.765 32 H 0.091 0.909 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -21.148 16.606 -0.016 26.888 hybrid contribution 0.995 -1.216 -0.006 1.572 sum -20.152 15.390 -0.022 25.356 Atomic orbital electron populations 1.20917 0.86831 1.04856 1.04220 1.20215 0.98624 0.90741 0.98761 1.21648 0.90992 1.00300 0.93815 1.21827 0.95728 0.91659 1.09470 1.96773 1.76376 1.24360 1.97717 1.21450 1.00981 0.90608 0.94124 1.19033 0.94120 0.89240 1.10570 1.21542 0.80610 0.90209 0.72301 1.90802 1.69712 1.33626 1.47116 1.86589 1.20603 1.34705 1.83475 1.22590 0.89461 0.82845 1.05664 1.20055 0.88119 0.85296 0.84273 1.90530 1.78169 1.24905 1.56752 1.41718 1.06057 1.07633 1.63951 1.19691 0.81545 0.94776 1.50827 0.89772 1.26124 1.05193 0.93961 0.95579 1.69662 1.38311 0.98477 1.49011 0.84923 0.75998 0.77898 0.79151 1.19482 1.19294 1.19495 1.21495 0.90785 1.00468 0.93305 0.89230 0.90098 0.89089 0.81327 0.84924 0.87259 0.87248 0.76511 0.90904 0.82919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 71.24 0.71 -0.06 16 2 C -0.08 -1.17 5.87 -19.90 -0.12 -1.29 16 3 C -0.05 -0.71 9.43 22.35 0.21 -0.50 16 4 C -0.11 -2.24 6.22 22.27 0.14 -2.10 16 5 Br -0.04 -0.76 33.69 -20.37 -0.69 -1.45 16 6 C -0.05 -1.35 9.35 22.56 0.21 -1.14 16 7 C -0.13 -3.39 5.87 -20.10 -0.12 -3.51 16 8 C 0.51 16.71 7.90 70.33 0.56 17.27 16 9 O -0.52 -18.02 16.14 19.93 0.32 -17.70 16 10 O -0.34 -13.02 9.01 -49.76 -0.45 -13.47 16 11 C 0.07 2.74 5.95 71.24 0.42 3.16 16 12 C 0.44 21.54 7.86 87.66 0.69 22.23 16 13 O -0.62 -35.44 16.08 15.73 0.25 -35.19 16 14 N -0.56 -28.72 5.29 -306.98 -1.62 -30.34 16 15 C -0.34 -19.16 9.68 84.04 0.81 -18.35 16 16 H 0.08 5.03 7.16 -2.91 -0.02 5.01 16 17 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 18 N -0.91 -48.69 13.05 21.66 0.28 -48.40 16 19 Si 1.00 42.19 29.55 68.60 2.03 44.22 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 C -0.04 -0.83 9.24 22.54 0.21 -0.62 16 24 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.08 0.49 8.08 -2.39 -0.02 0.47 16 26 H 0.09 0.34 8.08 -2.39 -0.02 0.32 16 27 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 28 H 0.13 4.03 7.61 -2.91 -0.02 4.00 16 29 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 30 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 31 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 32 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 33 H 0.15 2.74 7.65 -2.91 -0.02 2.71 16 Total: -1.00 -69.28 324.28 4.76 -64.53 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.43 Total: 22.65 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 4.20 Total: 15.16 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -1.34 Total: -78.75 kcal Atomic # 8 Polarization: -66.49 SS G_CDS: 0.13 Total: -66.36 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 35 Polarization: -0.76 SS G_CDS: -0.69 Total: -1.45 kcal Total: -69.28 4.76 -64.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766795136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.727 kcal (2) G-P(sol) polarization free energy of solvation -69.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds