Wall clock time and date at job start Sat Apr 11 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34713 * 116.99936 * 2 1 4 4 O 1.21468 * 120.00155 * 0.02562 * 3 2 1 5 5 C 1.47735 * 119.99873 * 179.97438 * 3 2 1 6 6 C 1.39650 * 120.14402 * 359.97438 * 5 3 2 7 7 C 1.37926 * 119.86791 * 179.76719 * 6 5 3 8 8 C 1.38377 * 120.15749 * 0.50239 * 7 6 5 9 9 C 1.50703 * 119.85016 * 179.76793 * 8 7 6 10 10 N 1.46505 * 109.47064 * 259.72382 * 9 8 7 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 8 12 12 O 1.21685 * 120.00526 * 0.02562 * 11 10 9 13 13 C 1.46381 * 119.99614 * 180.02562 * 11 10 9 14 14 H 1.07993 * 120.00106 * 0.02562 * 13 11 10 15 15 C 1.40051 * 119.99693 * 180.02562 * 13 11 10 16 16 N 1.30666 * 120.00364 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99754 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46882 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46723 * 119.99703 * 17 15 13 20 20 H 1.48501 * 109.47152 * 240.00068 * 17 15 13 21 21 C 1.38425 * 120.29411 * 359.49169 * 8 7 6 22 22 Br 1.89100 * 119.93502 * 180.27429 * 21 8 7 23 23 C 1.38060 * 120.12936 * 0.25275 * 21 8 7 24 24 H 1.08996 * 109.47334 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46763 * 299.99905 * 1 2 3 26 26 H 1.08998 * 109.47136 * 59.99315 * 1 2 3 27 27 H 1.08004 * 120.06282 * 0.03470 * 6 5 3 28 28 H 1.07997 * 119.92097 * 180.25109 * 7 6 5 29 29 H 1.09002 * 109.47152 * 139.72465 * 9 8 7 30 30 H 1.09001 * 109.46980 * 19.72565 * 9 8 7 31 31 H 0.96996 * 119.99606 * 0.02562 * 10 9 8 32 32 H 0.97002 * 120.00059 * 179.97438 * 16 15 13 33 33 H 1.08006 * 120.07578 * 179.97438 * 23 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3024 0.1083 0.0017 7 6 5.6794 0.1871 -0.0027 8 6 6.3051 1.4213 0.0024 9 6 7.8102 1.4993 0.0029 10 7 8.2849 1.7652 1.3632 11 6 9.6059 1.8761 1.6061 12 8 10.4043 1.7560 0.6957 13 6 10.0803 2.1412 2.9654 14 1 9.3718 2.2474 3.7734 15 6 11.4530 2.2570 3.2178 16 7 12.3102 2.1280 2.2401 17 14 12.0584 2.5946 4.9524 18 1 10.8962 2.6957 5.8714 19 1 12.9420 1.4853 5.3929 20 1 12.8182 3.8703 4.9721 21 6 5.5548 2.5846 0.0013 22 35 6.4205 4.2658 0.0004 23 6 4.1758 2.5197 0.0003 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 3.8156 -0.8558 0.0015 28 1 6.2707 -0.7166 -0.0059 29 1 8.1325 2.3038 -0.6581 30 1 8.2231 0.5535 -0.3477 31 1 7.6485 1.8606 2.0889 32 1 13.2610 2.2086 2.4149 33 1 3.5912 3.4279 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785433864.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:33 Heat of formation + Delta-G solvation = -95.053784 kcal Electronic energy + Delta-G solvation = -20418.928566 eV Core-core repulsion = 16877.074904 eV Total energy + Delta-G solvation = -3541.853661 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.010 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.84525 -39.35379 -37.20208 -36.68449 -34.02848 -32.54223 -32.28851 -31.16353 -29.43435 -28.31638 -26.91822 -25.35915 -22.89382 -22.61166 -20.86165 -19.70661 -18.19678 -17.53315 -17.28057 -16.64427 -15.65460 -15.57911 -15.24042 -14.81634 -14.41300 -14.04457 -13.79879 -13.75574 -13.38568 -13.21728 -12.92820 -12.46611 -12.29707 -11.62705 -11.56411 -11.26921 -11.13395 -11.12781 -10.95592 -10.85763 -10.83104 -10.47421 -10.20196 -9.95968 -9.24400 -8.86351 -8.85873 -7.62306 -7.55543 -6.19453 -4.64271 0.35967 0.94848 1.60652 2.21805 2.39487 3.13144 3.21593 3.25954 3.40165 4.11378 4.35112 4.54764 4.59882 4.67444 4.76660 4.83511 4.85863 4.99070 5.10239 5.15404 5.30160 5.59461 5.68486 5.79357 5.90580 5.95353 6.05881 6.26438 6.45167 6.47710 7.42793 7.43567 7.87773 8.02396 8.31524 9.02393 9.49246 10.58559 10.76811 Molecular weight = 341.01amu Principal moments of inertia in cm(-1) A = 0.017957 B = 0.003242 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.886640 B = 8635.185731 C = 9292.481627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.514 3.486 4 O -0.505 6.505 5 C -0.132 4.132 6 C -0.049 4.049 7 C -0.113 4.113 8 C -0.022 4.022 9 C 0.157 3.843 10 N -0.756 5.756 11 C 0.559 3.441 12 O -0.578 6.578 13 C -0.542 4.542 14 H 0.068 0.932 15 C 0.088 3.912 16 N -0.768 5.768 17 Si 0.907 3.093 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.096 4.096 22 Br -0.021 7.021 23 C -0.028 4.028 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.381 0.619 32 H 0.268 0.732 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.316 -2.626 -4.530 20.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.359 3.641 4 O -0.394 6.394 5 C -0.134 4.134 6 C -0.067 4.067 7 C -0.132 4.132 8 C -0.025 4.025 9 C 0.032 3.968 10 N -0.413 5.413 11 C 0.363 3.637 12 O -0.461 6.461 13 C -0.579 4.579 14 H 0.086 0.914 15 C -0.132 4.132 16 N -0.396 5.396 17 Si 0.731 3.269 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.176 4.176 22 Br 0.065 6.935 23 C -0.048 4.048 24 H 0.121 0.879 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.162 0.838 28 H 0.162 0.838 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.212 0.788 32 H 0.078 0.922 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.408 -1.784 -5.285 20.194 hybrid contribution -0.517 -0.102 1.187 1.299 sum -19.925 -1.886 -4.098 20.430 Atomic orbital electron populations 1.23300 0.75782 1.03862 1.02732 1.86540 1.23689 1.32493 1.84338 1.21103 0.88918 0.81495 0.72616 1.90843 1.66741 1.36007 1.45807 1.18947 0.89036 0.94571 1.10844 1.21558 0.93751 0.97998 0.93427 1.21188 0.94088 0.97567 1.00377 1.20549 0.97551 0.91688 0.92691 1.20045 0.85268 1.02116 0.89376 1.46120 1.08757 1.80426 1.05948 1.18210 0.78726 0.76641 0.90134 1.90606 1.53449 1.55302 1.46738 1.20882 0.92106 1.52079 0.92799 0.91374 1.25696 0.96705 0.92858 0.97931 1.70024 1.02312 1.35470 1.31842 0.86334 0.79239 0.78370 0.82930 1.18756 1.20187 1.20178 1.21752 0.94141 0.93056 1.08656 1.96831 1.79036 1.20227 1.97400 1.21156 0.92433 0.97590 0.93616 0.87854 0.91715 0.91760 0.83825 0.83783 0.90952 0.91638 0.78764 0.92163 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.46 9.82 -40.53 -0.40 -3.85 16 3 C 0.51 6.10 7.90 34.61 0.27 6.37 16 4 O -0.51 -7.11 16.14 -19.24 -0.31 -7.42 16 5 C -0.13 -1.55 5.87 -104.99 -0.62 -2.17 16 6 C -0.05 -0.51 9.62 -39.17 -0.38 -0.88 16 7 C -0.11 -1.32 9.65 -39.64 -0.38 -1.70 16 8 C -0.02 -0.32 5.26 -104.50 -0.55 -0.87 16 9 C 0.16 2.86 5.11 -5.19 -0.03 2.84 16 10 N -0.76 -16.26 5.54 -62.90 -0.35 -16.60 16 11 C 0.56 15.43 7.75 -12.99 -0.10 15.33 16 12 O -0.58 -18.28 15.02 5.20 0.08 -18.20 16 13 C -0.54 -15.05 9.54 -35.63 -0.34 -15.39 16 14 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 15 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 16 N -0.77 -22.78 11.83 55.55 0.66 -22.12 16 17 Si 0.91 20.01 29.56 -169.99 -5.02 14.98 16 18 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 21 C -0.10 -1.35 6.21 -39.58 -0.25 -1.59 16 22 Br -0.02 -0.32 31.98 -68.01 -2.17 -2.49 16 23 C -0.03 -0.35 9.33 -39.14 -0.37 -0.72 16 24 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.14 1.14 7.61 -52.48 -0.40 0.74 16 28 H 0.14 1.46 8.03 -52.49 -0.42 1.04 16 29 H 0.07 1.43 7.13 -51.93 -0.37 1.06 16 30 H 0.07 1.21 7.99 -51.93 -0.42 0.80 16 31 H 0.38 7.46 8.44 -40.82 -0.34 7.12 16 32 H 0.27 7.19 8.29 -40.82 -0.34 6.86 16 33 H 0.15 1.78 7.65 -52.48 -0.40 1.38 16 LS Contribution 320.92 15.07 4.84 4.84 Total: -1.00 -34.50 320.92 -7.61 -42.11 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -3.17 Total: 3.90 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -1.76 Total: 4.86 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.31 Total: -38.72 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.63 Total: -29.47 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -2.17 Total: -2.49 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.50 -7.61 -42.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785433864.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.945 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds