Wall clock time and date at job start Sat Apr 11 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00247 * 2 1 4 4 H 1.48499 * 109.47015 * 240.00188 * 3 2 1 5 5 H 1.48501 * 109.47281 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47272 * 119.99973 * 3 2 1 7 7 C 1.37876 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99991 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00244 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47137 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99611 * 180.02562 * 10 9 7 12 12 O 1.21579 * 120.00296 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99495 * 179.97438 * 11 10 9 14 14 N 1.40103 * 120.00304 * 0.02562 * 13 11 10 15 15 C 1.34779 * 119.99883 * 179.97438 * 14 13 11 16 16 O 1.21548 * 119.99865 * 0.02562 * 15 14 13 17 17 C 1.47848 * 119.99448 * 179.97438 * 15 14 13 18 18 C 1.39592 * 120.14275 * 359.97438 * 17 15 14 19 19 C 1.37946 * 119.87246 * 180.02562 * 18 17 15 20 20 C 1.38364 * 120.15620 * 359.97438 * 19 18 17 21 21 C 1.38422 * 120.28236 * 0.04496 * 20 19 18 22 22 Br 1.89096 * 119.93712 * 179.97438 * 21 20 19 23 23 C 1.38068 * 120.12391 * 359.95816 * 21 20 19 24 24 H 0.97002 * 119.99618 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46865 * 60.00350 * 9 7 2 26 26 H 1.09001 * 109.46803 * 300.00416 * 9 7 2 27 27 H 0.96996 * 120.00181 * 0.02562 * 10 9 7 28 28 H 0.97006 * 119.99886 * 179.97438 * 13 11 10 29 29 H 0.96998 * 119.99522 * 359.97438 * 14 13 11 30 30 H 1.08002 * 120.06375 * 359.97438 * 18 17 15 31 31 H 1.07999 * 119.92212 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.85749 * 180.02562 * 20 19 18 33 33 H 1.08011 * 120.07624 * 180.29872 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0027 11 6 1.7536 -4.8834 0.0033 12 8 0.5582 -5.1055 0.0026 13 7 2.6294 -5.9078 0.0037 14 7 4.0068 -5.6518 0.0040 15 6 4.8826 -6.6763 0.0049 16 8 4.4773 -7.8223 0.0050 17 6 6.3362 -6.4061 0.0047 18 6 6.8047 -5.0912 0.0030 19 6 8.1621 -4.8455 0.0022 20 6 9.0592 -5.8989 0.0037 21 6 8.6017 -7.2054 0.0050 22 35 9.8363 -8.6376 0.0063 23 6 7.2456 -7.4646 0.0057 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5575 -0.8881 26 1 0.6246 -2.5562 0.8919 27 1 3.1566 -3.4355 0.0029 28 1 2.3060 -6.8224 0.0045 29 1 4.3301 -4.7373 0.0036 30 1 6.1059 -4.2678 0.0014 31 1 8.5255 -3.8285 0.0005 32 1 10.1209 -5.7010 0.0035 33 1 6.8894 -8.4843 0.0116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787349488.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:34 Heat of formation + Delta-G solvation = 1.842853 kcal Electronic energy + Delta-G solvation = -20282.976607 eV Core-core repulsion = 16777.617450 eV Total energy + Delta-G solvation = -3505.359157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.016 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.77337 -39.51427 -38.47580 -35.62571 -34.39153 -33.14754 -32.37048 -31.94632 -30.63574 -29.41380 -27.21958 -24.54201 -23.10025 -22.83287 -21.21340 -20.55856 -19.29260 -18.05584 -17.33082 -16.43054 -15.83948 -15.79537 -15.65103 -15.12530 -14.91418 -14.69141 -14.49244 -14.20188 -13.88914 -13.57701 -13.26660 -12.32962 -12.24616 -12.08535 -11.74434 -11.37805 -11.22514 -11.09648 -10.93736 -10.77582 -10.55850 -10.37001 -9.80487 -9.58941 -9.51672 -9.27009 -8.87788 -8.41952 -7.94032 -6.25128 -4.33303 0.23596 0.64279 1.11222 1.85207 2.35545 3.18606 3.23326 3.25420 3.26043 3.56188 3.63288 3.99873 4.25862 4.27995 4.46119 4.56296 4.78669 4.93719 5.11195 5.17605 5.32102 5.56839 5.66173 5.73967 6.12537 6.42508 6.60058 7.19031 7.28577 7.36515 7.42083 7.53134 7.83209 7.97518 8.56108 8.72879 8.98747 9.33358 10.84879 Molecular weight = 341.02amu Principal moments of inertia in cm(-1) A = 0.017796 B = 0.002390 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.987707 B =11711.584651 C =13269.427622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.264 3.736 10 N -0.725 5.725 11 C 0.702 3.298 12 O -0.574 6.574 13 N -0.541 5.541 14 N -0.516 5.516 15 C 0.559 3.441 16 O -0.532 6.532 17 C -0.118 4.118 18 C -0.071 4.071 19 C -0.115 4.115 20 C -0.065 4.065 21 C -0.100 4.100 22 Br -0.042 7.042 23 C -0.029 4.029 24 H 0.268 0.732 25 H 0.030 0.970 26 H 0.029 0.971 27 H 0.380 0.620 28 H 0.436 0.564 29 H 0.421 0.579 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.427 -13.224 0.018 27.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.080 0.920 9 C 0.143 3.857 10 N -0.379 5.379 11 C 0.401 3.599 12 O -0.448 6.448 13 N -0.300 5.300 14 N -0.266 5.266 15 C 0.346 3.654 16 O -0.408 6.408 17 C -0.123 4.123 18 C -0.090 4.090 19 C -0.134 4.134 20 C -0.085 4.085 21 C -0.180 4.180 22 Br 0.044 6.956 23 C -0.050 4.050 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.213 0.787 28 H 0.282 0.718 29 H 0.264 0.736 30 H 0.155 0.845 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 23.454 -14.370 0.018 27.506 hybrid contribution 0.683 1.475 0.001 1.626 sum 24.138 -12.894 0.019 27.366 Atomic orbital electron populations 1.69959 1.06116 1.27602 1.48253 1.24939 0.94934 0.99445 0.94571 0.86454 0.79428 0.82241 0.78656 1.20036 1.21016 1.20030 1.21113 0.93129 0.90288 1.54022 0.91994 1.19112 0.87683 0.80772 0.98111 1.45810 1.10591 1.04550 1.76911 1.15998 0.84242 0.80874 0.78803 1.90995 1.12164 1.82516 1.59149 1.44860 0.91703 1.10391 1.83058 1.44690 0.96387 1.10008 1.75535 1.18096 0.85248 0.84478 0.77593 1.90816 1.79293 1.20440 1.50269 1.19627 0.91838 0.94109 1.06744 1.21560 0.96732 0.95543 0.95152 1.21188 0.92423 0.99776 0.99975 1.21393 1.01021 0.90571 0.95485 1.21730 0.93617 0.93427 1.09201 1.96772 1.57361 1.43780 1.97713 1.21194 0.90213 1.00279 0.93287 0.92235 0.95248 0.95263 0.78748 0.71833 0.73583 0.84538 0.83839 0.84286 0.83343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.03 13.29 55.43 0.74 -24.29 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 19.76 29.54 -169.99 -5.02 14.74 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 7 C -0.55 -13.93 9.28 -34.44 -0.32 -14.25 16 8 H 0.06 1.43 7.60 -52.49 -0.40 1.03 16 9 C 0.26 6.65 5.43 -5.19 -0.03 6.62 16 10 N -0.72 -14.32 5.51 -66.41 -0.37 -14.68 16 11 C 0.70 13.92 8.68 -86.92 -0.75 13.17 16 12 O -0.57 -13.85 17.18 5.30 0.09 -13.76 16 13 N -0.54 -8.50 6.26 27.63 0.17 -8.33 16 14 N -0.52 -6.39 6.21 30.53 0.19 -6.20 16 15 C 0.56 6.96 7.89 -12.33 -0.10 6.87 16 16 O -0.53 -8.23 16.19 5.32 0.09 -8.14 16 17 C -0.12 -1.14 5.87 -104.97 -0.62 -1.76 16 18 C -0.07 -0.52 9.54 -39.18 -0.37 -0.89 16 19 C -0.11 -0.70 10.03 -39.64 -0.40 -1.10 16 20 C -0.06 -0.42 9.78 -39.47 -0.39 -0.81 16 21 C -0.10 -0.82 6.22 -39.58 -0.25 -1.07 16 22 Br -0.04 -0.32 33.69 -68.01 -2.29 -2.61 16 23 C -0.03 -0.28 9.33 -39.16 -0.37 -0.64 16 24 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.38 6.08 6.24 -40.82 -0.25 5.83 16 28 H 0.44 6.77 8.10 -182.59 -1.48 5.29 16 29 H 0.42 4.25 4.74 -182.60 -0.86 3.39 16 30 H 0.14 0.75 6.40 -52.49 -0.34 0.41 16 31 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 33 H 0.15 1.47 7.65 -52.48 -0.40 1.07 16 LS Contribution 318.13 15.07 4.79 4.79 Total: -1.00 -32.67 318.13 -9.85 -42.52 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.56 Total: 8.21 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -3.68 Total: 7.76 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.73 Total: -53.51 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.18 Total: -21.90 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -2.29 Total: -2.61 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.67 -9.85 -42.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787349488.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.364 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds