Wall clock time and date at job start Sat Apr 11 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00247 * 2 1 4 4 H 1.48499 * 109.47015 * 240.00188 * 3 2 1 5 5 H 1.48501 * 109.47281 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47272 * 119.99973 * 3 2 1 7 7 C 1.37876 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99991 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00244 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47137 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99611 * 180.02562 * 10 9 7 12 12 O 1.21579 * 120.00296 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99495 * 179.97438 * 11 10 9 14 14 N 1.40103 * 120.00304 * 0.02562 * 13 11 10 15 15 C 1.34779 * 119.99883 * 179.97438 * 14 13 11 16 16 O 1.21548 * 119.99865 * 0.02562 * 15 14 13 17 17 C 1.47848 * 119.99448 * 179.97438 * 15 14 13 18 18 C 1.39592 * 120.14275 * 359.97438 * 17 15 14 19 19 C 1.37946 * 119.87246 * 180.02562 * 18 17 15 20 20 C 1.38364 * 120.15620 * 359.97438 * 19 18 17 21 21 C 1.38422 * 120.28236 * 0.04496 * 20 19 18 22 22 Br 1.89096 * 119.93712 * 179.97438 * 21 20 19 23 23 C 1.38068 * 120.12391 * 359.95816 * 21 20 19 24 24 H 0.97002 * 119.99618 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46865 * 60.00350 * 9 7 2 26 26 H 1.09001 * 109.46803 * 300.00416 * 9 7 2 27 27 H 0.96996 * 120.00181 * 0.02562 * 10 9 7 28 28 H 0.97006 * 119.99886 * 179.97438 * 13 11 10 29 29 H 0.96998 * 119.99522 * 359.97438 * 14 13 11 30 30 H 1.08002 * 120.06375 * 359.97438 * 18 17 15 31 31 H 1.07999 * 119.92212 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.85749 * 180.02562 * 20 19 18 33 33 H 1.08011 * 120.07624 * 180.29872 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0027 11 6 1.7536 -4.8834 0.0033 12 8 0.5582 -5.1055 0.0026 13 7 2.6294 -5.9078 0.0037 14 7 4.0068 -5.6518 0.0040 15 6 4.8826 -6.6763 0.0049 16 8 4.4773 -7.8223 0.0050 17 6 6.3362 -6.4061 0.0047 18 6 6.8047 -5.0912 0.0030 19 6 8.1621 -4.8455 0.0022 20 6 9.0592 -5.8989 0.0037 21 6 8.6017 -7.2054 0.0050 22 35 9.8363 -8.6376 0.0063 23 6 7.2456 -7.4646 0.0057 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5575 -0.8881 26 1 0.6246 -2.5562 0.8919 27 1 3.1566 -3.4355 0.0029 28 1 2.3060 -6.8224 0.0045 29 1 4.3301 -4.7373 0.0036 30 1 6.1059 -4.2678 0.0014 31 1 8.5255 -3.8285 0.0005 32 1 10.1209 -5.7010 0.0035 33 1 6.8894 -8.4843 0.0116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787349488.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:34 Heat of formation + Delta-G solvation = -21.775907 kcal Electronic energy + Delta-G solvation = -20284.000793 eV Core-core repulsion = 16777.617450 eV Total energy + Delta-G solvation = -3506.383343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.016 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.85884 -40.78875 -39.45186 -36.95900 -36.24933 -34.30408 -33.85377 -32.68921 -31.62618 -30.13123 -29.13105 -25.38562 -24.93741 -23.46464 -22.20521 -22.14427 -20.69754 -19.08944 -18.60499 -17.85034 -17.05678 -16.97097 -16.74299 -16.53424 -16.07945 -15.98397 -15.88429 -15.09895 -14.91003 -14.55211 -14.31797 -14.10676 -14.02345 -12.94108 -12.90765 -12.70938 -12.57125 -12.31502 -12.24194 -11.93961 -11.77941 -11.48735 -11.44107 -11.26497 -10.78711 -10.24419 -10.09653 -9.86487 -9.41645 -8.24976 -6.41727 -0.42679 0.04654 0.46738 0.70958 1.48148 1.49007 1.52776 1.60639 1.99875 2.06915 2.45016 2.60044 3.10428 3.11065 3.73511 3.84824 3.92172 4.02240 4.22444 4.37241 4.77307 4.94556 4.97793 5.10075 5.19962 5.25617 5.27022 5.38620 5.43815 5.61571 5.78318 5.90033 6.14136 6.60150 6.71140 7.18045 7.27285 7.42617 8.86914 Molecular weight = 341.02amu Principal moments of inertia in cm(-1) A = 0.017796 B = 0.002390 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.987707 B =11711.584651 C =13269.427622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.292 1.292 6 H -0.260 1.260 7 C -0.554 4.554 8 H 0.092 0.908 9 C 0.280 3.720 10 N -0.713 5.713 11 C 0.705 3.295 12 O -0.622 6.622 13 N -0.530 5.530 14 N -0.507 5.507 15 C 0.564 3.436 16 O -0.566 6.566 17 C -0.133 4.133 18 C -0.067 4.067 19 C -0.107 4.107 20 C -0.056 4.056 21 C -0.110 4.110 22 Br -0.042 7.042 23 C -0.041 4.041 24 H 0.268 0.732 25 H -0.008 1.008 26 H -0.008 1.008 27 H 0.402 0.598 28 H 0.440 0.560 29 H 0.433 0.567 30 H 0.158 0.842 31 H 0.177 0.823 32 H 0.163 0.837 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.044 -11.497 0.017 30.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.218 1.218 6 H -0.184 1.184 7 C -0.592 4.592 8 H 0.110 0.890 9 C 0.157 3.843 10 N -0.368 5.368 11 C 0.404 3.596 12 O -0.500 6.500 13 N -0.286 5.286 14 N -0.260 5.260 15 C 0.353 3.647 16 O -0.445 6.445 17 C -0.138 4.138 18 C -0.086 4.086 19 C -0.125 4.125 20 C -0.076 4.076 21 C -0.189 4.189 22 Br 0.043 6.957 23 C -0.062 4.062 24 H 0.077 0.923 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.238 0.762 28 H 0.285 0.715 29 H 0.279 0.721 30 H 0.175 0.825 31 H 0.194 0.806 32 H 0.181 0.819 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 27.164 -12.675 0.017 29.976 hybrid contribution -0.349 0.835 0.002 0.905 sum 26.816 -11.840 0.019 29.313 Atomic orbital electron populations 1.70137 1.08362 1.28636 1.49798 1.26050 0.95712 1.03876 0.93894 0.85202 0.77867 0.76480 0.79640 1.18407 1.21789 1.18394 1.21552 0.94573 0.89977 1.53086 0.89030 1.18586 0.88064 0.82915 0.94689 1.45303 1.10984 1.03493 1.77048 1.15942 0.83959 0.81277 0.78398 1.90962 1.14647 1.83420 1.60968 1.44423 0.93333 1.09367 1.81483 1.44730 0.94334 1.10955 1.75953 1.18616 0.86260 0.83725 0.76115 1.90802 1.80035 1.21880 1.51750 1.19406 0.89577 0.95479 1.09372 1.21840 0.97999 0.94783 0.93947 1.21576 0.91551 1.01167 0.98237 1.21767 1.02514 0.89791 0.93533 1.21819 0.93007 0.94346 1.09749 1.96774 1.56957 1.44228 1.97737 1.21140 0.91054 0.99771 0.94251 0.92315 0.98963 0.98975 0.76205 0.71461 0.72129 0.82470 0.80558 0.81918 0.84758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.81 13.29 21.45 0.28 -53.53 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.98 39.29 29.54 68.60 2.03 41.32 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.29 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 7 C -0.55 -27.66 9.28 25.60 0.24 -27.42 16 8 H 0.09 3.92 7.60 -2.91 -0.02 3.90 16 9 C 0.28 14.44 5.43 85.63 0.46 14.91 16 10 N -0.71 -27.92 5.51 -482.29 -2.66 -30.58 16 11 C 0.71 28.28 8.68 179.05 1.55 29.84 16 12 O -0.62 -31.13 17.18 -3.96 -0.07 -31.20 16 13 N -0.53 -16.52 6.26 -184.75 -1.16 -17.67 16 14 N -0.51 -11.86 6.21 -175.60 -1.09 -12.95 16 15 C 0.56 13.57 7.89 86.79 0.68 14.26 16 16 O -0.57 -17.65 16.19 -3.87 -0.06 -17.71 16 17 C -0.13 -2.37 5.87 -20.09 -0.12 -2.49 16 18 C -0.07 -0.75 9.54 22.53 0.21 -0.54 16 19 C -0.11 -0.84 10.03 22.23 0.22 -0.62 16 20 C -0.06 -0.54 9.78 22.34 0.22 -0.32 16 21 C -0.11 -1.59 6.22 22.27 0.14 -1.45 16 22 Br -0.04 -0.60 33.69 -20.37 -0.69 -1.29 16 23 C -0.04 -0.75 9.33 22.54 0.21 -0.54 16 24 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 25 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H 0.40 12.01 6.24 -92.71 -0.58 11.44 16 28 H 0.44 13.75 8.10 -213.31 -1.73 12.02 16 29 H 0.43 7.66 4.74 -213.32 -1.01 6.65 16 30 H 0.16 1.05 6.40 -2.91 -0.02 1.03 16 31 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 32 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 33 H 0.13 2.74 7.65 -2.90 -0.02 2.72 16 Total: -1.00 -73.49 318.13 -1.24 -74.73 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -2.11 Total: 22.57 kcal Atomic # 6 Polarization: 22.03 SS G_CDS: 4.29 Total: 26.32 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -4.62 Total: -114.73 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -0.13 Total: -48.91 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -0.69 Total: -1.29 kcal Total: -73.49 -1.24 -74.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787349488.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.951 kcal (2) G-P(sol) polarization free energy of solvation -73.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds