Wall clock time and date at job start Sat Apr 11 2020 06:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38495 * 120.37602 * 2 1 4 4 C 1.39315 * 118.36097 * 179.97438 * 3 2 1 5 5 N 1.39781 * 120.48396 * 179.97438 * 4 3 2 6 6 C 1.34785 * 119.99558 * 325.05050 * 5 4 3 7 7 O 1.21381 * 120.00134 * 4.68320 * 6 5 4 8 8 C 1.49351 * 119.99739 * 184.67623 * 6 5 4 9 9 O 1.21361 * 120.00057 * 0.02562 * 8 6 5 10 10 N 1.34775 * 119.99519 * 180.02562 * 8 6 5 11 11 C 1.46508 * 119.99782 * 179.97438 * 10 8 6 12 12 C 1.50698 * 109.47213 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99627 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00166 * 180.02562 * 12 11 10 15 15 N 1.31521 * 120.00076 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00374 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47258 * 59.99735 * 16 14 12 18 18 H 1.48499 * 109.47392 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46818 * 300.00023 * 16 14 12 20 20 C 1.38916 * 119.03889 * 0.02562 * 4 3 2 21 21 N 1.31802 * 120.66448 * 359.97438 * 20 4 3 22 22 C 1.31963 * 121.78732 * 0.02562 * 21 20 4 23 23 Br 1.89102 * 119.54282 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.46994 * 90.00148 * 1 2 3 25 25 H 1.08999 * 109.46770 * 209.99685 * 1 2 3 26 26 H 1.08998 * 109.46844 * 330.00057 * 1 2 3 27 27 H 1.07992 * 120.81941 * 359.95552 * 3 2 1 28 28 H 0.97001 * 120.00682 * 145.05043 * 5 4 3 29 29 H 0.96993 * 120.00805 * 359.97438 * 10 8 6 30 30 H 1.08999 * 109.46952 * 300.00019 * 11 10 8 31 31 H 1.09003 * 109.47150 * 59.99745 * 11 10 8 32 32 H 0.96997 * 120.00055 * 180.02562 * 15 14 12 33 33 H 1.07998 * 119.67163 * 179.71860 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2074 1.1948 0.0000 4 6 3.5997 1.1458 0.0005 5 7 4.3508 2.3248 0.0000 6 6 3.9061 3.4067 -0.6696 7 8 2.8149 3.3856 -1.2008 8 6 4.7560 4.6316 -0.7578 9 8 5.8471 4.6526 -0.2269 10 7 4.3111 5.7136 -1.4269 11 6 5.1445 6.9155 -1.5130 12 6 4.4224 7.9716 -2.3093 13 1 3.4410 7.7678 -2.7115 14 6 5.0150 9.1976 -2.5254 15 7 6.2107 9.4452 -2.0369 16 14 4.1196 10.5070 -3.5119 17 1 2.8374 10.8414 -2.8416 18 1 4.9644 11.7251 -3.5992 19 1 3.8449 9.9954 -4.8787 20 6 4.2309 -0.0916 0.0005 21 7 3.5264 -1.2056 0.0005 22 6 2.2068 -1.1935 0.0000 23 35 1.2594 -2.8300 0.0007 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6871 2.1411 -0.0007 28 1 5.1919 2.3643 0.4815 29 1 3.4392 5.6968 -1.8515 30 1 5.3457 7.2907 -0.5096 31 1 6.0859 6.6704 -2.0048 32 1 6.6275 10.3079 -2.1886 33 1 5.3097 -0.1415 -0.0037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787590749.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:40 Heat of formation + Delta-G solvation = -34.170431 kcal Electronic energy + Delta-G solvation = -20282.581215 eV Core-core repulsion = 16775.660405 eV Total energy + Delta-G solvation = -3506.920810 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.016 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.34754 -39.99403 -38.21982 -35.81100 -34.44700 -34.12617 -32.47742 -32.05930 -29.82207 -27.84822 -27.66372 -25.14517 -23.76075 -22.68460 -21.61316 -20.18953 -18.95626 -17.41723 -17.07899 -17.05602 -16.43009 -15.80085 -15.51938 -15.12997 -14.91265 -14.37352 -13.99236 -13.89723 -13.59654 -13.26048 -13.14358 -12.98328 -12.38499 -12.12995 -12.03734 -11.66113 -11.50787 -11.10289 -10.95870 -10.77165 -10.56732 -10.41028 -10.09349 -9.71116 -9.57629 -9.26493 -8.91083 -8.62748 -8.22315 -6.28508 -4.36584 0.38955 0.82394 1.07202 1.58665 2.36301 3.19534 3.20502 3.25479 3.27148 3.47729 3.79369 4.10782 4.25273 4.40470 4.47031 4.52831 4.90281 4.98629 5.08311 5.14632 5.28348 5.46243 5.65275 5.71679 5.83321 6.25574 6.73241 6.95956 7.02508 7.26816 7.31197 7.43520 7.61065 7.78865 8.24027 8.43052 8.73117 9.30081 10.81404 Molecular weight = 341.02amu Principal moments of inertia in cm(-1) A = 0.034895 B = 0.002059 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.215868 B =13594.319235 C =14230.780252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 C -0.077 4.077 4 C 0.120 3.880 5 N -0.646 5.646 6 C 0.511 3.489 7 O -0.501 6.501 8 C 0.492 3.508 9 O -0.532 6.532 10 N -0.668 5.668 11 C 0.246 3.754 12 C -0.549 4.549 13 H 0.066 0.934 14 C 0.066 3.934 15 N -0.885 5.885 16 Si 0.907 3.093 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.274 1.274 20 C 0.083 3.917 21 N -0.437 5.437 22 C 0.096 3.904 23 Br -0.009 7.009 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.162 0.838 28 H 0.429 0.571 29 H 0.405 0.595 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.268 0.732 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.496 -23.337 5.791 26.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.085 4.085 3 C -0.106 4.106 4 C 0.022 3.978 5 N -0.294 5.294 6 C 0.295 3.705 7 O -0.374 6.374 8 C 0.270 3.730 9 O -0.411 6.411 10 N -0.317 5.317 11 C 0.127 3.873 12 C -0.587 4.587 13 H 0.084 0.916 14 C -0.138 4.138 15 N -0.521 5.521 16 Si 0.734 3.266 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.079 4.079 21 N -0.145 5.145 22 C -0.121 4.121 23 Br 0.075 6.925 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.179 0.821 28 H 0.268 0.732 29 H 0.240 0.760 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.223 -24.479 5.754 27.144 hybrid contribution -0.417 1.905 -0.522 2.019 sum -10.639 -22.573 5.232 25.498 Atomic orbital electron populations 1.20967 0.88943 1.04129 1.03794 1.20622 0.98244 0.91319 0.98304 1.21723 0.92325 0.99340 0.97191 1.18923 0.91879 0.87172 0.99794 1.43193 1.25715 1.09519 1.51003 1.21079 0.86956 0.84728 0.77783 1.90734 1.20569 1.82085 1.44038 1.19543 0.86770 0.84209 0.82451 1.90756 1.20907 1.82579 1.46877 1.46449 1.22130 1.13684 1.49391 1.19382 0.90584 0.79091 0.98270 1.21143 1.03922 0.98264 1.35404 0.91577 1.24935 0.94923 0.98344 0.95615 1.69950 1.14255 1.23907 1.44034 0.86411 0.79467 0.80364 0.80357 1.19934 1.20984 1.19929 1.22663 1.00576 0.85304 0.99384 1.67392 1.06301 1.30352 1.10489 1.22625 0.91729 0.91598 1.06124 1.96725 1.71410 1.26944 1.97426 0.89743 0.90094 0.90354 0.82072 0.73207 0.76024 0.94578 0.94593 0.92187 0.81240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.57 36.01 0.34 -0.59 16 2 C -0.08 -0.83 5.90 -104.48 -0.62 -1.45 16 3 C -0.08 -0.89 8.49 -39.09 -0.33 -1.22 16 4 C 0.12 1.37 6.32 -83.58 -0.53 0.84 16 5 N -0.65 -7.66 5.33 -10.19 -0.05 -7.72 16 6 C 0.51 7.68 7.74 -11.63 -0.09 7.59 16 7 O -0.50 -8.04 13.95 5.47 0.08 -7.96 16 8 C 0.49 9.04 7.89 -11.63 -0.09 8.95 16 9 O -0.53 -10.90 16.48 5.49 0.09 -10.81 16 10 N -0.67 -13.47 5.54 -61.94 -0.34 -13.81 16 11 C 0.25 6.11 5.43 -5.19 -0.03 6.08 16 12 C -0.55 -14.29 9.28 -34.44 -0.32 -14.61 16 13 H 0.07 1.62 7.60 -52.49 -0.40 1.23 16 14 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 15 N -0.88 -24.92 13.29 55.43 0.74 -24.19 16 16 Si 0.91 20.24 29.54 -169.99 -5.02 15.22 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 20 C 0.08 0.88 11.13 -17.31 -0.19 0.68 16 21 N -0.44 -5.18 10.31 -11.47 -0.12 -5.30 16 22 C 0.10 1.08 7.16 -17.45 -0.12 0.95 16 23 Br -0.01 -0.09 31.95 -68.01 -2.17 -2.26 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.56 6.65 -51.93 -0.35 0.21 16 26 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 27 H 0.16 1.93 6.32 -52.49 -0.33 1.59 16 28 H 0.43 4.32 8.30 -40.82 -0.34 3.99 16 29 H 0.40 7.51 7.79 -40.82 -0.32 7.20 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 317.60 15.07 4.79 4.79 Total: -1.00 -29.92 317.60 -7.07 -37.00 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -2.98 Total: 6.15 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -2.08 Total: 8.89 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 0.22 Total: -51.01 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.17 Total: -18.77 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -2.17 Total: -2.26 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.92 -7.07 -37.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787590749.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.826 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds