Wall clock time and date at job start Sat Apr 11 2020 06:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38495 * 120.37602 * 2 1 4 4 C 1.39315 * 118.36097 * 179.97438 * 3 2 1 5 5 N 1.39781 * 120.48396 * 179.97438 * 4 3 2 6 6 C 1.34785 * 119.99558 * 325.05050 * 5 4 3 7 7 O 1.21381 * 120.00134 * 4.68320 * 6 5 4 8 8 C 1.49351 * 119.99739 * 184.67623 * 6 5 4 9 9 O 1.21361 * 120.00057 * 0.02562 * 8 6 5 10 10 N 1.34775 * 119.99519 * 180.02562 * 8 6 5 11 11 C 1.46508 * 119.99782 * 179.97438 * 10 8 6 12 12 C 1.50698 * 109.47213 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99627 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00166 * 180.02562 * 12 11 10 15 15 N 1.31521 * 120.00076 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00374 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47258 * 59.99735 * 16 14 12 18 18 H 1.48499 * 109.47392 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46818 * 300.00023 * 16 14 12 20 20 C 1.38916 * 119.03889 * 0.02562 * 4 3 2 21 21 N 1.31802 * 120.66448 * 359.97438 * 20 4 3 22 22 C 1.31963 * 121.78732 * 0.02562 * 21 20 4 23 23 Br 1.89102 * 119.54282 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.46994 * 90.00148 * 1 2 3 25 25 H 1.08999 * 109.46770 * 209.99685 * 1 2 3 26 26 H 1.08998 * 109.46844 * 330.00057 * 1 2 3 27 27 H 1.07992 * 120.81941 * 359.95552 * 3 2 1 28 28 H 0.97001 * 120.00682 * 145.05043 * 5 4 3 29 29 H 0.96993 * 120.00805 * 359.97438 * 10 8 6 30 30 H 1.08999 * 109.46952 * 300.00019 * 11 10 8 31 31 H 1.09003 * 109.47150 * 59.99745 * 11 10 8 32 32 H 0.96997 * 120.00055 * 180.02562 * 15 14 12 33 33 H 1.07998 * 119.67163 * 179.71860 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2074 1.1948 0.0000 4 6 3.5997 1.1458 0.0005 5 7 4.3508 2.3248 0.0000 6 6 3.9061 3.4067 -0.6696 7 8 2.8149 3.3856 -1.2008 8 6 4.7560 4.6316 -0.7578 9 8 5.8471 4.6526 -0.2269 10 7 4.3111 5.7136 -1.4269 11 6 5.1445 6.9155 -1.5130 12 6 4.4224 7.9716 -2.3093 13 1 3.4410 7.7678 -2.7115 14 6 5.0150 9.1976 -2.5254 15 7 6.2107 9.4452 -2.0369 16 14 4.1196 10.5070 -3.5119 17 1 2.8374 10.8414 -2.8416 18 1 4.9644 11.7251 -3.5992 19 1 3.8449 9.9954 -4.8787 20 6 4.2309 -0.0916 0.0005 21 7 3.5264 -1.2056 0.0005 22 6 2.2068 -1.1935 0.0000 23 35 1.2594 -2.8300 0.0007 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6871 2.1411 -0.0007 28 1 5.1919 2.3643 0.4815 29 1 3.4392 5.6968 -1.8515 30 1 5.3457 7.2907 -0.5096 31 1 6.0859 6.6704 -2.0048 32 1 6.6275 10.3079 -2.1886 33 1 5.3097 -0.1415 -0.0037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787590749.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:39 Heat of formation + Delta-G solvation = -55.853039 kcal Electronic energy + Delta-G solvation = -20283.521444 eV Core-core repulsion = 16775.660405 eV Total energy + Delta-G solvation = -3507.861038 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.016 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.41445 -41.15245 -39.63861 -36.99882 -36.10864 -34.93642 -34.38676 -32.93699 -30.74314 -29.68314 -28.41668 -26.57200 -24.91185 -24.06139 -22.77705 -21.55531 -20.35328 -18.53321 -18.41767 -17.93355 -17.79774 -17.28272 -17.00156 -16.70897 -16.05650 -15.73692 -15.32690 -14.98020 -14.70757 -14.45940 -14.07325 -13.96695 -13.81200 -13.66196 -13.17141 -13.02621 -12.80386 -12.70512 -12.56038 -12.23477 -11.63211 -11.55832 -11.33603 -11.08128 -10.83896 -10.71643 -10.44491 -10.07475 -9.51982 -8.31486 -6.47547 -0.53656 -0.02582 0.25498 0.30747 1.12576 1.45157 1.47368 1.55906 1.98727 2.34682 2.41800 2.57347 3.04172 3.28720 3.38965 3.59492 3.62862 3.72534 4.25007 4.34841 4.60767 4.70953 4.80297 4.97403 5.01536 5.11885 5.17376 5.22903 5.37329 5.49451 5.74520 5.79583 6.34974 6.47416 6.55736 6.65562 6.96758 7.25470 8.79736 Molecular weight = 341.02amu Principal moments of inertia in cm(-1) A = 0.034895 B = 0.002059 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.215868 B =13594.319235 C =14230.780252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 C -0.085 4.085 4 C 0.107 3.893 5 N -0.627 5.627 6 C 0.525 3.475 7 O -0.510 6.510 8 C 0.496 3.504 9 O -0.554 6.554 10 N -0.671 5.671 11 C 0.263 3.737 12 C -0.562 4.562 13 H 0.080 0.920 14 C 0.011 3.989 15 N -0.925 5.925 16 Si 0.980 3.020 17 H -0.264 1.264 18 H -0.284 1.284 19 H -0.265 1.265 20 C 0.090 3.910 21 N -0.454 5.454 22 C 0.085 3.915 23 Br 0.006 6.994 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.157 0.843 28 H 0.438 0.562 29 H 0.414 0.586 30 H 0.007 0.993 31 H 0.006 0.994 32 H 0.271 0.729 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.038 -24.252 5.414 27.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.085 4.085 3 C -0.113 4.113 4 C 0.010 3.990 5 N -0.276 5.276 6 C 0.307 3.693 7 O -0.384 6.384 8 C 0.275 3.725 9 O -0.434 6.434 10 N -0.321 5.321 11 C 0.141 3.859 12 C -0.600 4.600 13 H 0.098 0.902 14 C -0.189 4.189 15 N -0.563 5.563 16 Si 0.804 3.196 17 H -0.188 1.188 18 H -0.209 1.209 19 H -0.189 1.189 20 C -0.072 4.072 21 N -0.163 5.163 22 C -0.131 4.131 23 Br 0.090 6.910 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.174 0.826 28 H 0.279 0.721 29 H 0.251 0.749 30 H 0.025 0.975 31 H 0.024 0.976 32 H 0.079 0.921 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -11.785 -25.458 5.396 28.568 hybrid contribution 0.066 2.034 -0.339 2.063 sum -11.720 -23.423 5.057 26.676 Atomic orbital electron populations 1.21049 0.87134 1.05094 1.04536 1.20855 0.99559 0.90646 0.97438 1.21793 0.92542 0.99620 0.97371 1.18997 0.91940 0.86936 1.01119 1.42939 1.25899 1.08821 1.49897 1.20156 0.86237 0.84266 0.78595 1.90744 1.20615 1.82142 1.44910 1.20047 0.86692 0.84773 0.80964 1.90741 1.22112 1.83190 1.47311 1.46151 1.22148 1.13219 1.50574 1.18843 0.90165 0.80720 0.96135 1.21535 1.04532 0.98666 1.35283 0.90154 1.25936 0.95613 1.00804 0.96591 1.70087 1.16008 1.24646 1.45537 0.85269 0.78297 0.77125 0.78955 1.18839 1.20903 1.18929 1.23028 1.01726 0.84500 0.97950 1.67468 1.06790 1.30802 1.11236 1.22959 0.91868 0.92603 1.05713 1.96733 1.70958 1.25940 1.97339 0.88977 0.89224 0.89336 0.82564 0.72137 0.74943 0.97489 0.97607 0.92054 0.78711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 9.57 71.24 0.68 -0.96 16 2 C -0.08 -1.54 5.90 -19.77 -0.12 -1.66 16 3 C -0.08 -1.83 8.49 22.59 0.19 -1.64 16 4 C 0.11 2.28 6.32 38.30 0.24 2.52 16 5 N -0.63 -14.04 5.33 -304.50 -1.62 -15.67 16 6 C 0.53 15.31 7.74 87.24 0.68 15.99 16 7 O -0.51 -15.78 13.95 -3.34 -0.05 -15.83 16 8 C 0.50 18.25 7.89 87.24 0.69 18.94 16 9 O -0.55 -22.96 16.48 -3.28 -0.05 -23.01 16 10 N -0.67 -27.37 5.54 -468.23 -2.59 -29.97 16 11 C 0.26 13.45 5.43 85.63 0.46 13.92 16 12 C -0.56 -29.43 9.28 25.60 0.24 -29.19 16 13 H 0.08 3.88 7.60 -2.91 -0.02 3.86 16 14 C 0.01 0.59 5.46 84.65 0.46 1.05 16 15 N -0.92 -53.09 13.29 21.45 0.28 -52.80 16 16 Si 0.98 41.09 29.54 68.60 2.03 43.12 16 17 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 18 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 20 C 0.09 1.72 11.13 84.86 0.94 2.67 16 21 N -0.45 -10.00 10.31 -190.20 -1.96 -11.96 16 22 C 0.08 1.76 7.16 84.70 0.61 2.37 16 23 Br 0.01 0.11 31.95 -20.37 -0.65 -0.54 16 24 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.09 1.05 6.65 -2.39 -0.02 1.03 16 26 H 0.09 1.02 8.09 -2.39 -0.02 1.00 16 27 H 0.16 3.54 6.32 -2.91 -0.02 3.52 16 28 H 0.44 8.23 8.30 -92.71 -0.77 7.46 16 29 H 0.41 15.27 7.79 -92.71 -0.72 14.55 16 30 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -64.08 317.60 0.16 -63.92 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -0.30 Total: 18.73 kcal Atomic # 6 Polarization: 18.93 SS G_CDS: 5.08 Total: 24.01 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -5.90 Total: -110.39 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -0.10 Total: -38.84 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 35 Polarization: 0.11 SS G_CDS: -0.65 Total: -0.54 kcal Total: -64.08 0.16 -63.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787590749.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.069 kcal (2) G-P(sol) polarization free energy of solvation -64.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds