Wall clock time and date at job start Sat Apr 11 2020 06:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31833 * 119.66463 * 2 1 4 4 C 1.31926 * 121.78491 * 179.97438 * 3 2 1 5 5 Br 1.89101 * 119.54524 * 179.97438 * 4 3 2 6 6 C 1.38401 * 120.90930 * 359.97438 * 4 3 2 7 7 C 1.38447 * 119.23472 * 0.06325 * 6 4 3 8 8 C 1.38874 * 119.66567 * 180.02562 * 2 1 3 9 9 N 1.39780 * 120.48067 * 359.72425 * 8 2 1 10 10 C 1.34775 * 119.99524 * 145.95714 * 9 8 2 11 11 O 1.21381 * 120.00365 * 4.32152 * 10 9 8 12 12 C 1.49354 * 119.99613 * 184.31476 * 10 9 8 13 13 O 1.21353 * 120.00311 * 0.02562 * 12 10 9 14 14 N 1.34775 * 119.99613 * 180.02562 * 12 10 9 15 15 C 1.46511 * 119.99695 * 180.02562 * 14 12 10 16 16 C 1.50703 * 109.46761 * 180.02562 * 15 14 12 17 17 H 1.07990 * 120.00261 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99390 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99804 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00349 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47191 * 90.00530 * 20 18 16 22 22 H 1.48506 * 109.47344 * 210.00462 * 20 18 16 23 23 H 1.48500 * 109.47138 * 330.00394 * 20 18 16 24 24 H 1.09003 * 109.47083 * 269.97665 * 1 2 3 25 25 H 1.08997 * 109.47050 * 29.97827 * 1 2 3 26 26 H 1.09001 * 109.46955 * 149.97773 * 1 2 3 27 27 H 1.08001 * 120.38542 * 180.02562 * 6 4 3 28 28 H 1.07992 * 120.81971 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00038 * 325.95942 * 9 8 2 30 30 H 0.97000 * 120.00313 * 0.02562 * 14 12 10 31 31 H 1.08999 * 109.46732 * 299.99799 * 15 14 12 32 32 H 1.08995 * 109.46915 * 60.00491 * 15 14 12 33 33 H 0.96996 * 120.00119 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1595 1.1455 0.0000 4 6 3.4778 1.1944 0.0005 5 35 4.3488 2.8728 -0.0003 6 6 4.2322 0.0340 0.0016 7 6 3.5879 -1.1914 0.0008 8 6 2.1943 -1.2067 -0.0005 9 7 1.4985 -2.4190 0.0047 10 6 1.9993 -3.4861 -0.6488 11 8 3.0907 -3.4180 -1.1755 12 6 1.2111 -4.7525 -0.7247 13 8 0.1198 -4.8205 -0.1984 14 7 1.7121 -5.8198 -1.3777 15 6 0.9387 -7.0619 -1.4527 16 6 1.7167 -8.0917 -2.2308 17 1 2.6894 -7.8455 -2.6299 18 6 1.1858 -9.3478 -2.4340 19 7 1.8649 -10.2468 -3.1127 20 14 -0.4972 -9.7734 -1.7443 21 1 -1.5413 -9.4418 -2.7468 22 1 -0.5524 -11.2246 -1.4337 23 1 -0.7358 -8.9923 -0.5041 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 5.3111 0.0838 0.0024 28 1 4.1513 -2.1127 0.0012 29 1 0.6554 -2.4923 0.4786 30 1 2.5846 -5.7656 -1.7981 31 1 0.7504 -7.4339 -0.4456 32 1 -0.0106 -6.8692 -1.9524 33 1 1.4916 -11.1306 -3.2554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787593802.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:41 Heat of formation + Delta-G solvation = -50.854029 kcal Electronic energy + Delta-G solvation = -20445.713688 eV Core-core repulsion = 16938.069423 eV Total energy + Delta-G solvation = -3507.644265 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.016 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.49277 -41.17578 -39.66317 -37.04072 -36.14020 -34.48506 -34.33568 -32.95596 -31.24240 -30.34480 -28.60146 -26.47519 -24.64535 -23.59189 -23.01543 -21.61190 -20.48097 -18.90173 -18.62915 -17.86120 -17.51286 -17.23183 -16.94449 -16.68822 -16.08882 -15.82298 -15.37685 -15.11610 -14.90641 -14.51483 -14.40483 -14.09238 -13.76176 -13.37956 -13.18355 -13.12765 -12.83543 -12.69477 -12.52295 -11.91395 -11.69691 -11.60638 -11.50111 -11.13196 -10.92802 -10.86402 -10.53940 -10.19734 -9.47875 -8.39250 -6.48892 -0.55179 -0.02959 0.22881 0.28634 1.09555 1.37509 1.39687 1.50470 1.95697 2.29297 2.39250 2.50845 2.96006 3.15179 3.31030 3.46543 3.71213 3.80880 4.30309 4.41916 4.59113 4.65441 4.68468 4.82028 4.84575 4.96471 5.08682 5.12091 5.23895 5.36671 5.67338 6.00709 6.34988 6.46841 6.50659 6.61506 6.85721 7.17624 8.75596 Molecular weight = 341.02amu Principal moments of inertia in cm(-1) A = 0.036456 B = 0.002134 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.874666 B =13116.402794 C =13757.811092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.122 3.878 3 N -0.459 5.459 4 C 0.098 3.902 5 Br 0.004 6.996 6 C -0.119 4.119 7 C -0.077 4.077 8 C 0.099 3.901 9 N -0.625 5.625 10 C 0.523 3.477 11 O -0.511 6.511 12 C 0.501 3.499 13 O -0.547 6.547 14 N -0.670 5.670 15 C 0.229 3.771 16 C -0.555 4.555 17 H 0.054 0.946 18 C 0.025 3.975 19 N -0.932 5.932 20 Si 0.942 3.058 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.249 1.249 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.173 0.827 28 H 0.159 0.841 29 H 0.437 0.563 30 H 0.414 0.586 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.794 27.009 9.390 28.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.021 4.021 3 N -0.170 5.170 4 C -0.119 4.119 5 Br 0.088 6.912 6 C -0.142 4.142 7 C -0.105 4.105 8 C 0.002 3.998 9 N -0.273 5.273 10 C 0.305 3.695 11 O -0.385 6.385 12 C 0.281 3.719 13 O -0.426 6.426 14 N -0.320 5.320 15 C 0.106 3.894 16 C -0.593 4.593 17 H 0.073 0.927 18 C -0.176 4.176 19 N -0.571 5.571 20 Si 0.765 3.235 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.173 1.173 24 H 0.123 0.877 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.190 0.810 28 H 0.176 0.824 29 H 0.278 0.722 30 H 0.251 0.749 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.626 28.138 9.284 29.674 hybrid contribution -0.034 -1.782 -0.085 1.785 sum 1.592 26.356 9.199 27.960 Atomic orbital electron populations 1.20884 0.85724 1.04891 1.05146 1.21547 0.98511 0.85404 0.96667 1.67336 1.08586 1.28652 1.12437 1.23008 0.91655 0.93266 1.03986 1.96789 1.74510 1.22551 1.97393 1.22127 1.02943 0.89884 0.99238 1.21932 0.92875 0.99880 0.95792 1.18745 0.92462 0.85978 1.02663 1.42944 1.26312 1.07409 1.50641 1.20199 0.85984 0.84758 0.78590 1.90763 1.20242 1.82867 1.44638 1.19908 0.86403 0.84826 0.80780 1.90731 1.21167 1.83749 1.46940 1.45960 1.22653 1.11837 1.51514 1.19396 0.91990 0.80892 0.97103 1.21254 1.05156 0.97191 1.35651 0.92741 1.25677 1.01768 0.95658 0.94489 1.69997 1.40250 1.05922 1.40882 0.85786 0.79268 0.78172 0.80261 1.18816 1.20244 1.17253 0.87722 0.89098 0.89674 0.80993 0.82366 0.72197 0.74923 0.94977 0.95173 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.64 71.24 0.69 -0.78 16 2 C 0.12 2.37 6.80 42.71 0.29 2.66 16 3 N -0.46 -9.97 10.23 -178.33 -1.82 -11.80 16 4 C 0.10 1.97 7.16 84.72 0.61 2.58 16 5 Br 0.00 0.06 33.86 -20.37 -0.69 -0.63 16 6 C -0.12 -2.18 9.82 22.36 0.22 -1.96 16 7 C -0.08 -1.61 8.82 22.59 0.20 -1.41 16 8 C 0.10 2.08 6.30 38.30 0.24 2.32 16 9 N -0.62 -13.25 4.75 -304.50 -1.45 -14.70 16 10 C 0.52 14.41 7.74 87.24 0.68 15.09 16 11 O -0.51 -15.56 13.92 -3.34 -0.05 -15.61 16 12 C 0.50 16.76 7.89 87.24 0.69 17.45 16 13 O -0.55 -19.72 16.48 -3.26 -0.05 -19.78 16 14 N -0.67 -25.55 5.54 -468.23 -2.59 -28.14 16 15 C 0.23 10.29 4.50 85.63 0.38 10.68 16 16 C -0.55 -29.50 9.83 25.60 0.25 -29.25 16 17 H 0.05 3.13 7.84 -2.92 -0.02 3.10 16 18 C 0.02 1.34 5.47 84.65 0.46 1.80 16 19 N -0.93 -54.55 13.96 21.45 0.30 -54.25 16 20 Si 0.94 41.25 27.47 68.60 1.88 43.14 16 21 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.25 -10.34 6.54 99.48 0.65 -9.69 16 24 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.08 1.07 7.16 -2.39 -0.02 1.05 16 27 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 28 H 0.16 3.48 6.27 -2.91 -0.02 3.46 16 29 H 0.44 7.59 7.32 -92.71 -0.68 6.91 16 30 H 0.41 15.25 7.79 -92.71 -0.72 14.53 16 31 H 0.03 1.47 7.20 -2.39 -0.02 1.45 16 32 H 0.03 1.36 7.57 -2.39 -0.02 1.35 16 33 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -63.50 314.73 -0.03 -63.53 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.26 Total: 19.07 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 4.71 Total: 19.17 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -5.57 Total: -108.88 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.10 Total: -35.39 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.88 Total: 43.14 kcal Atomic # 35 Polarization: 0.06 SS G_CDS: -0.69 Total: -0.63 kcal Total: -63.50 -0.03 -63.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787593802.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.672 kcal (2) G-P(sol) polarization free energy of solvation -63.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds