Wall clock time and date at job start Sat Apr 11 2020 06:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52099 * 115.19377 * 2 1 4 4 C 1.51721 * 112.45868 * 230.88813 * 3 2 1 5 5 N 1.45301 * 111.99758 * 318.66314 * 4 3 2 6 6 S 1.65601 * 118.81793 * 235.90060 * 5 4 3 7 7 O 1.42103 * 104.27667 * 159.35643 * 6 5 4 8 8 O 1.42095 * 104.27732 * 31.49782 * 6 5 4 9 9 C 1.81403 * 104.45145 * 275.42410 * 6 5 4 10 10 C 1.52997 * 109.47064 * 175.12473 * 9 6 5 11 11 C 1.50702 * 109.46912 * 180.02562 * 10 9 6 12 12 H 1.08000 * 120.00057 * 359.73015 * 11 10 9 13 13 C 1.37876 * 119.99580 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99661 * 179.72627 * 13 11 10 15 15 Si 1.86798 * 120.00508 * 359.73113 * 13 11 10 16 16 H 1.48497 * 109.47269 * 89.99345 * 15 13 11 17 17 H 1.48500 * 109.47392 * 209.99834 * 15 13 11 18 18 H 1.48502 * 109.46702 * 329.99377 * 15 13 11 19 19 C 1.45523 * 122.36550 * 56.17938 * 5 4 3 20 20 C 1.51959 * 116.46556 * 208.88448 * 2 1 3 21 21 H 1.09005 * 115.77459 * 359.55063 * 20 2 1 22 22 C 1.52123 * 60.77232 * 253.01223 * 20 2 1 23 23 Cl 1.80300 * 117.54229 * 252.63626 * 22 20 2 24 24 Cl 1.80300 * 117.54294 * 107.36134 * 22 20 2 25 25 H 1.08998 * 109.47403 * 85.58297 * 1 2 3 26 26 H 1.09003 * 109.47131 * 205.58792 * 1 2 3 27 27 H 1.09000 * 109.47139 * 325.58575 * 1 2 3 28 28 H 1.09002 * 108.88944 * 110.12926 * 3 2 1 29 29 H 1.08992 * 108.81023 * 351.60562 * 3 2 1 30 30 H 1.09001 * 108.97711 * 198.00819 * 4 3 2 31 31 H 1.09001 * 108.97405 * 79.31161 * 4 3 2 32 32 H 1.08998 * 109.46396 * 55.12978 * 9 6 5 33 33 H 1.08991 * 109.46919 * 295.13170 * 9 6 5 34 34 H 1.09001 * 109.46852 * 60.00482 * 10 9 6 35 35 H 1.09002 * 109.47420 * 300.00318 * 10 9 6 36 36 H 0.97000 * 119.99913 * 180.02562 * 14 13 11 37 37 H 1.09002 * 109.11717 * 80.29053 * 19 5 4 38 38 H 1.08995 * 109.12170 * 199.36750 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1774 1.3763 0.0000 4 6 3.2246 1.5242 -1.0879 5 7 4.0476 0.3337 -1.2167 6 16 5.6915 0.4815 -1.0831 7 8 6.1365 -0.8297 -0.7636 8 8 5.8739 1.5587 -0.1745 9 6 6.2404 0.9522 -2.7468 10 6 7.7431 1.2392 -2.7259 11 6 8.1990 1.6308 -4.1079 12 1 7.4888 1.6667 -4.9208 13 6 9.5236 1.9383 -4.3355 14 7 9.9225 2.2749 -5.5427 15 14 10.7517 1.8769 -2.9294 16 1 11.3398 0.5160 -2.8448 17 1 11.8307 2.8683 -3.1708 18 1 10.0610 2.1978 -1.6546 19 6 3.4795 -0.9829 -1.4647 20 6 2.2072 -1.1911 -0.6571 21 1 1.5397 -1.9494 -1.0666 22 6 2.2234 -1.0708 0.8593 23 17 3.7851 -0.6276 1.6438 24 17 1.1724 -2.1970 1.7962 25 1 -0.3634 0.0791 -1.0246 26 1 -0.3633 -0.9269 0.4439 27 1 -0.3633 0.8478 0.5808 28 1 2.6488 1.5445 0.9683 29 1 1.4035 2.1288 -0.1506 30 1 3.8648 2.3739 -0.8505 31 1 2.7245 1.7139 -2.0377 32 1 5.7043 1.8456 -3.0670 33 1 6.0357 0.1372 -3.4410 34 1 8.2792 0.3458 -2.4056 35 1 7.9478 2.0542 -2.0316 36 1 10.8544 2.4909 -5.7030 37 1 3.2522 -1.0794 -2.5264 38 1 4.2080 -1.7443 -1.1861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790381234.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:45 Heat of formation + Delta-G solvation = -80.769279 kcal Electronic energy + Delta-G solvation = -24188.888637 eV Core-core repulsion = 20438.235200 eV Total energy + Delta-G solvation = -3750.653437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.01395 -38.26209 -37.43395 -37.01620 -36.99955 -35.91284 -35.75215 -33.48370 -32.86378 -29.17693 -27.92251 -27.17522 -24.59882 -23.14919 -21.86459 -20.68700 -19.58824 -18.78473 -18.37765 -17.60068 -17.40798 -16.80621 -16.50074 -16.34068 -16.17446 -15.25693 -14.94003 -14.85481 -14.75155 -14.27086 -14.05957 -13.81742 -13.72692 -13.26554 -13.18339 -13.09785 -13.06808 -12.98451 -12.94896 -12.81205 -12.53620 -12.26165 -12.24016 -12.15235 -12.00166 -11.89811 -11.72034 -11.47581 -11.19332 -10.93316 -10.85627 -10.67815 -9.86691 -8.37818 -6.43323 -0.76879 0.21562 1.21606 1.30151 1.32562 1.42258 1.67297 2.10748 2.28086 2.82487 2.95996 3.04890 3.15210 3.25452 3.55250 3.77873 3.88772 3.97897 4.13195 4.13332 4.30888 4.46233 4.54563 4.65449 4.74901 4.77795 4.83599 4.96730 5.01772 5.05094 5.07649 5.12582 5.23405 5.35582 5.45819 5.73154 6.15701 6.62702 7.21215 8.77620 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.027276 B = 0.003318 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.293737 B = 8436.763347 C = 8800.782521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.055 4.055 3 C -0.108 4.108 4 C 0.110 3.890 5 N -0.986 5.986 6 S 2.599 3.401 7 O -0.981 6.981 8 O -0.984 6.984 9 C -0.587 4.587 10 C -0.017 4.017 11 C -0.526 4.526 12 H 0.053 0.947 13 C 0.016 3.984 14 N -0.938 5.938 15 Si 0.920 3.080 16 H -0.261 1.261 17 H -0.272 1.272 18 H -0.252 1.252 19 C 0.128 3.872 20 C -0.103 4.103 21 H 0.162 0.838 22 C -0.024 4.024 23 Cl -0.116 7.116 24 Cl -0.097 7.097 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.122 0.878 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.026 0.974 35 H 0.030 0.970 36 H 0.270 0.730 37 H 0.119 0.881 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.426 -5.756 10.919 27.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.057 4.057 3 C -0.146 4.146 4 C -0.015 4.015 5 N -0.824 5.824 6 S 2.696 3.304 7 O -0.971 6.971 8 O -0.974 6.974 9 C -0.718 4.718 10 C -0.056 4.056 11 C -0.565 4.565 12 H 0.071 0.929 13 C -0.183 4.183 14 N -0.578 5.578 15 Si 0.743 3.257 16 H -0.185 1.185 17 H -0.197 1.197 18 H -0.176 1.176 19 C 0.004 3.996 20 C -0.124 4.124 21 H 0.180 0.820 22 C -0.075 4.075 23 Cl -0.089 7.089 24 Cl -0.070 7.070 25 H 0.113 0.887 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.140 0.860 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.136 0.864 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.771 -5.907 11.780 27.179 hybrid contribution 1.130 -0.011 0.044 1.131 sum -22.640 -5.918 11.823 26.218 Atomic orbital electron populations 1.21686 0.87824 1.04013 1.04572 1.22273 0.97414 0.90948 0.95075 1.21174 0.98941 0.94489 1.00030 1.21002 0.93996 0.85574 1.00937 1.56605 1.23506 1.13930 1.88394 1.05147 0.73925 0.73598 0.77688 1.93500 1.80801 1.39192 1.83630 1.93507 1.85081 1.57676 1.61125 1.30341 1.06010 1.13121 1.22373 1.19363 0.90661 0.97325 0.98261 1.21165 0.94776 1.46452 0.94139 0.92902 1.25831 1.00400 0.94098 0.97966 1.69999 1.17694 1.47539 1.22530 0.86094 0.79460 0.79455 0.80688 1.18534 1.19680 1.17586 1.20778 0.94314 0.83355 1.01173 1.23177 0.99979 1.01101 0.88099 0.82028 1.27655 0.87097 1.02346 0.90445 1.98774 1.33734 1.92785 1.83581 1.98719 1.66795 1.64768 1.76691 0.88651 0.91263 0.90249 0.91648 0.86010 0.89371 0.87823 0.83928 0.84085 0.95580 0.95128 0.92065 0.86359 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.44 71.98 0.68 -0.32 16 2 C -0.06 -0.75 2.58 -52.55 -0.14 -0.88 16 3 C -0.11 -1.58 5.28 29.88 0.16 -1.42 16 4 C 0.11 1.89 6.24 86.18 0.54 2.43 16 5 N -0.99 -22.06 2.12 -524.75 -1.11 -23.17 16 6 S 2.60 85.52 5.11 -56.49 -0.29 85.23 16 7 O -0.98 -36.85 16.24 -127.65 -2.07 -38.92 16 8 O -0.98 -37.55 16.59 -127.65 -2.12 -39.67 16 9 C -0.59 -20.54 6.12 71.98 0.44 -20.10 16 10 C -0.02 -0.80 4.05 29.85 0.12 -0.68 16 11 C -0.53 -29.50 9.66 25.60 0.25 -29.26 16 12 H 0.05 3.13 7.99 -2.91 -0.02 3.11 16 13 C 0.02 0.92 5.47 84.65 0.46 1.38 16 14 N -0.94 -57.25 13.96 21.45 0.30 -56.95 16 15 Si 0.92 43.89 27.47 68.60 1.88 45.77 16 16 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16 19 C 0.13 2.29 5.97 86.28 0.52 2.81 16 20 C -0.10 -1.49 5.50 -11.71 -0.06 -1.56 16 21 H 0.16 1.44 8.13 -2.38 -0.02 1.42 16 22 C -0.02 -0.46 3.59 30.58 0.11 -0.35 16 23 Cl -0.12 -3.21 25.65 -2.72 -0.07 -3.28 16 24 Cl -0.10 -1.74 27.27 -2.72 -0.07 -1.82 16 25 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.07 0.63 6.16 -2.39 -0.01 0.62 16 27 H 0.08 0.54 7.99 -2.39 -0.02 0.52 16 28 H 0.06 1.27 6.86 -2.39 -0.02 1.26 16 29 H 0.12 1.02 7.76 -2.39 -0.02 1.00 16 30 H 0.09 1.76 6.79 -2.39 -0.02 1.75 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 33 H 0.14 4.42 8.14 -2.40 -0.02 4.40 16 34 H 0.03 1.21 7.58 -2.39 -0.02 1.19 16 35 H 0.03 1.44 7.19 -2.39 -0.02 1.42 16 36 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 37 H 0.12 1.33 8.14 -2.39 -0.02 1.32 16 38 H 0.09 2.09 6.49 -2.39 -0.02 2.07 16 Total: -1.00 -74.58 341.03 0.54 -74.05 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.02 Total: 6.71 kcal Atomic # 6 Polarization: -51.02 SS G_CDS: 3.07 Total: -47.95 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -0.82 Total: -80.12 kcal Atomic # 8 Polarization: -74.40 SS G_CDS: -4.19 Total: -78.59 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.77 kcal Atomic # 16 Polarization: 85.52 SS G_CDS: -0.29 Total: 85.23 kcal Atomic # 17 Polarization: -4.95 SS G_CDS: -0.14 Total: -5.10 kcal Total: -74.58 0.54 -74.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790381234.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.721 kcal (2) G-P(sol) polarization free energy of solvation -74.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds