Wall clock time and date at job start Sat Apr 11 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38353 * 119.44715 * 2 1 4 4 C 1.38360 * 119.32771 * 179.79865 * 3 2 1 5 5 C 1.40019 * 118.29860 * 0.46590 * 4 3 2 6 6 C 1.47779 * 120.56619 * 179.72916 * 5 4 3 7 7 O 1.21555 * 120.00213 * 180.02562 * 6 5 4 8 8 N 1.34782 * 119.99834 * 0.02562 * 6 5 4 9 9 C 1.46498 * 119.99977 * 179.97438 * 8 6 5 10 10 C 1.50691 * 109.47096 * 180.02562 * 9 8 6 11 11 O 1.21297 * 120.00259 * 359.97438 * 10 9 8 12 12 N 1.34785 * 120.00110 * 180.02562 * 10 9 8 13 13 C 1.37098 * 119.99749 * 180.02562 * 12 10 9 14 14 H 1.07992 * 120.00449 * 359.97438 * 13 12 10 15 15 C 1.38950 * 119.99631 * 179.97438 * 13 12 10 16 16 N 1.31418 * 120.00125 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00316 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46875 * 59.99967 * 17 15 13 19 19 H 1.48499 * 109.47511 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46821 * 300.00251 * 17 15 13 21 21 C 1.39667 * 118.86894 * 359.75673 * 5 4 3 22 22 Br 1.89094 * 119.73297 * 179.97438 * 21 5 4 23 23 N 1.31791 * 120.53499 * 0.02562 * 21 5 4 24 24 H 1.09001 * 109.46953 * 269.72460 * 1 2 3 25 25 H 1.09000 * 109.47318 * 29.72058 * 1 2 3 26 26 H 1.09000 * 109.47161 * 149.72688 * 1 2 3 27 27 H 1.07994 * 120.33613 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.85086 * 180.22249 * 4 3 2 29 29 H 0.96993 * 119.99871 * 0.02562 * 8 6 5 30 30 H 1.09004 * 109.47007 * 300.00557 * 9 8 6 31 31 H 1.08998 * 109.47220 * 59.99887 * 9 8 6 32 32 H 0.96995 * 119.99678 * 359.97438 * 12 10 9 33 33 H 0.97001 * 120.00073 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1872 1.2048 0.0000 4 6 3.5708 1.2019 0.0042 5 6 4.2321 -0.0323 -0.0016 6 6 5.7086 -0.0938 -0.0035 7 8 6.2720 -1.1709 -0.0091 8 7 6.4305 1.0444 0.0010 9 6 7.8942 0.9834 -0.0003 10 6 8.4551 2.3820 0.0061 11 8 7.7060 3.3360 0.0107 12 7 9.7894 2.5730 0.0056 13 6 10.2997 3.8455 0.0119 14 1 9.6327 4.6948 0.0169 15 6 11.6752 4.0423 0.0119 16 7 12.4869 3.0088 0.0054 17 14 12.3706 5.7760 0.0198 18 1 11.9060 6.4901 1.2361 19 1 13.8544 5.7142 0.0179 20 1 11.9043 6.5018 -1.1889 21 6 3.4724 -1.2043 -0.0063 22 35 4.3401 -2.8843 -0.0150 23 7 2.1557 -1.1487 -0.0057 24 1 -0.3633 -0.0049 1.0277 25 1 -0.3634 0.8925 -0.5095 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6437 2.1380 -0.0004 28 1 4.1266 2.1279 0.0079 29 1 5.9808 1.9038 0.0058 30 1 8.2364 0.4509 0.8871 31 1 8.2352 0.4588 -0.8928 32 1 10.3884 1.8102 0.0015 33 1 13.4471 3.1463 0.0050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804819945.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:00 Heat of formation + Delta-G solvation = -25.476824 kcal Electronic energy + Delta-G solvation = -20358.533264 eV Core-core repulsion = 16851.989437 eV Total energy + Delta-G solvation = -3506.543827 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.016 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.89318 -39.26767 -38.09603 -34.63837 -33.91059 -33.57494 -32.96735 -31.42326 -30.54429 -28.78148 -27.26851 -24.66981 -23.40906 -23.14495 -20.59931 -19.72260 -18.40512 -17.87113 -17.02260 -16.15957 -15.65319 -15.57841 -15.15925 -14.91325 -14.87852 -14.38367 -14.04795 -13.87259 -13.71457 -13.30821 -12.95056 -12.63142 -12.43693 -12.23552 -11.98489 -11.67143 -11.13897 -11.02468 -10.95208 -10.53962 -10.34760 -10.12290 -10.10806 -9.67003 -9.18260 -8.95937 -8.81357 -8.69460 -8.14767 -6.55388 -3.97769 0.24489 0.72842 1.27257 2.73344 3.10404 3.10592 3.19310 3.23937 3.48188 3.69213 3.94663 4.07608 4.28325 4.46086 4.57036 4.79186 4.82902 4.99863 5.13036 5.17069 5.19743 5.51575 5.57045 5.63648 5.85572 5.90548 6.00919 6.07542 6.54546 7.32886 7.41898 7.64637 7.86935 8.27336 8.40410 8.99995 9.34305 9.81746 10.61259 Molecular weight = 341.02amu Principal moments of inertia in cm(-1) A = 0.021383 B = 0.002680 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.166962 B =10444.239614 C =11732.959869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.153 3.847 3 C -0.167 4.167 4 C -0.031 4.031 5 C -0.160 4.160 6 C 0.549 3.451 7 O -0.512 6.512 8 N -0.699 5.699 9 C 0.110 3.890 10 C 0.427 3.573 11 O -0.600 6.600 12 N -0.547 5.547 13 C -0.307 4.307 14 H 0.105 0.895 15 C 0.027 3.973 16 N -0.894 5.894 17 Si 0.934 3.066 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 C 0.175 3.825 22 Br 0.034 6.966 23 N -0.468 5.468 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.149 0.851 28 H 0.153 0.847 29 H 0.408 0.592 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.396 0.604 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.581 -8.349 -0.008 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.013 3.987 3 C -0.187 4.187 4 C -0.058 4.058 5 C -0.168 4.168 6 C 0.334 3.666 7 O -0.389 6.389 8 N -0.354 5.354 9 C -0.017 4.017 10 C 0.212 3.788 11 O -0.487 6.487 12 N -0.181 5.181 13 C -0.436 4.436 14 H 0.123 0.877 15 C -0.176 4.176 16 N -0.533 5.533 17 Si 0.761 3.239 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.198 1.198 21 C -0.044 4.044 22 Br 0.120 6.880 23 N -0.179 5.179 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.167 0.833 28 H 0.171 0.829 29 H 0.247 0.753 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.230 0.770 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.540 -9.903 -0.020 22.803 hybrid contribution 0.934 1.994 0.022 2.202 sum -19.606 -7.910 0.002 21.142 Atomic orbital electron populations 1.20804 0.87797 1.04072 1.03681 1.21589 0.97439 0.87709 0.91938 1.22051 0.94506 0.99769 1.02346 1.21949 0.94789 0.97430 0.91622 1.20676 0.95474 0.93733 1.06887 1.17807 0.85999 0.84643 0.78172 1.90949 1.71729 1.27336 1.48858 1.45599 1.06954 1.09056 1.73807 1.20987 0.79812 0.97294 1.03606 1.19708 0.83730 0.89517 0.85816 1.90485 1.58108 1.42437 1.57657 1.41786 1.04525 1.09454 1.62334 1.19679 0.90844 0.84581 1.48515 0.87696 1.25336 0.95919 0.99720 0.96670 1.69607 1.04405 1.30343 1.48987 0.85868 0.77515 0.81394 0.79171 1.19746 1.20817 1.19751 1.23037 0.90805 0.93164 0.97361 1.96875 1.76182 1.18552 1.96439 1.67431 1.07550 1.29556 1.13345 0.89725 0.90043 0.89969 0.83311 0.82930 0.75345 0.89483 0.89472 0.76971 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.16 36.01 0.37 -0.27 16 2 C 0.15 1.48 6.78 -82.51 -0.56 0.92 16 3 C -0.17 -1.44 9.72 -39.49 -0.38 -1.83 16 4 C -0.03 -0.33 9.65 -38.87 -0.37 -0.71 16 5 C -0.16 -2.19 5.89 -104.80 -0.62 -2.80 16 6 C 0.55 8.72 7.77 -12.36 -0.10 8.63 16 7 O -0.51 -9.14 13.50 5.32 0.07 -9.07 16 8 N -0.70 -11.26 5.48 -62.46 -0.34 -11.60 16 9 C 0.11 1.96 6.15 -5.20 -0.03 1.92 16 10 C 0.43 9.46 7.85 -10.99 -0.09 9.38 16 11 O -0.60 -14.77 15.24 5.54 0.08 -14.68 16 12 N -0.55 -13.23 5.29 -10.97 -0.06 -13.29 16 13 C -0.31 -8.17 9.68 -14.93 -0.14 -8.32 16 14 H 0.11 2.90 7.16 -52.49 -0.38 2.52 16 15 C 0.03 0.69 5.50 -17.46 -0.10 0.59 16 16 N -0.89 -23.53 13.05 55.50 0.72 -22.81 16 17 Si 0.93 20.20 29.55 -169.99 -5.02 15.18 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 C 0.17 2.45 7.21 -17.04 -0.12 2.33 16 22 Br 0.03 0.49 30.58 -68.01 -2.08 -1.59 16 23 N -0.47 -5.92 10.22 -7.54 -0.08 -6.00 16 24 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 28 H 0.15 1.41 6.52 -52.49 -0.34 1.06 16 29 H 0.41 6.28 5.54 -40.82 -0.23 6.05 16 30 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.40 9.24 7.90 -40.82 -0.32 8.92 16 33 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 314.73 15.07 4.74 4.74 Total: -1.00 -31.18 314.73 -7.04 -38.22 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -2.93 Total: 11.05 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -2.15 Total: 9.85 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.25 Total: -53.69 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.16 Total: -23.75 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 35 Polarization: 0.49 SS G_CDS: -2.08 Total: -1.59 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.18 -7.04 -38.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804819945.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.742 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds