Wall clock time and date at job start Sat Apr 11 2020 06:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38353 * 119.44715 * 2 1 4 4 C 1.38360 * 119.32771 * 179.79865 * 3 2 1 5 5 C 1.40019 * 118.29860 * 0.46590 * 4 3 2 6 6 C 1.47779 * 120.56619 * 179.72916 * 5 4 3 7 7 O 1.21555 * 120.00213 * 180.02562 * 6 5 4 8 8 N 1.34782 * 119.99834 * 0.02562 * 6 5 4 9 9 C 1.46498 * 119.99977 * 179.97438 * 8 6 5 10 10 C 1.50691 * 109.47096 * 180.02562 * 9 8 6 11 11 O 1.21297 * 120.00259 * 359.97438 * 10 9 8 12 12 N 1.34785 * 120.00110 * 180.02562 * 10 9 8 13 13 C 1.37098 * 119.99749 * 180.02562 * 12 10 9 14 14 H 1.07992 * 120.00449 * 359.97438 * 13 12 10 15 15 C 1.38950 * 119.99631 * 179.97438 * 13 12 10 16 16 N 1.31418 * 120.00125 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00316 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46875 * 59.99967 * 17 15 13 19 19 H 1.48499 * 109.47511 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46821 * 300.00251 * 17 15 13 21 21 C 1.39667 * 118.86894 * 359.75673 * 5 4 3 22 22 Br 1.89094 * 119.73297 * 179.97438 * 21 5 4 23 23 N 1.31791 * 120.53499 * 0.02562 * 21 5 4 24 24 H 1.09001 * 109.46953 * 269.72460 * 1 2 3 25 25 H 1.09000 * 109.47318 * 29.72058 * 1 2 3 26 26 H 1.09000 * 109.47161 * 149.72688 * 1 2 3 27 27 H 1.07994 * 120.33613 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.85086 * 180.22249 * 4 3 2 29 29 H 0.96993 * 119.99871 * 0.02562 * 8 6 5 30 30 H 1.09004 * 109.47007 * 300.00557 * 9 8 6 31 31 H 1.08998 * 109.47220 * 59.99887 * 9 8 6 32 32 H 0.96995 * 119.99678 * 359.97438 * 12 10 9 33 33 H 0.97001 * 120.00073 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1872 1.2048 0.0000 4 6 3.5708 1.2019 0.0042 5 6 4.2321 -0.0323 -0.0016 6 6 5.7086 -0.0938 -0.0035 7 8 6.2720 -1.1709 -0.0091 8 7 6.4305 1.0444 0.0010 9 6 7.8942 0.9834 -0.0003 10 6 8.4551 2.3820 0.0061 11 8 7.7060 3.3360 0.0107 12 7 9.7894 2.5730 0.0056 13 6 10.2997 3.8455 0.0119 14 1 9.6327 4.6948 0.0169 15 6 11.6752 4.0423 0.0119 16 7 12.4869 3.0088 0.0054 17 14 12.3706 5.7760 0.0198 18 1 11.9060 6.4901 1.2361 19 1 13.8544 5.7142 0.0179 20 1 11.9043 6.5018 -1.1889 21 6 3.4724 -1.2043 -0.0063 22 35 4.3401 -2.8843 -0.0150 23 7 2.1557 -1.1487 -0.0057 24 1 -0.3633 -0.0049 1.0277 25 1 -0.3634 0.8925 -0.5095 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6437 2.1380 -0.0004 28 1 4.1266 2.1279 0.0079 29 1 5.9808 1.9038 0.0058 30 1 8.2364 0.4509 0.8871 31 1 8.2352 0.4588 -0.8928 32 1 10.3884 1.8102 0.0015 33 1 13.4471 3.1463 0.0050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804819945.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:59 Heat of formation + Delta-G solvation = -48.176140 kcal Electronic energy + Delta-G solvation = -20359.517580 eV Core-core repulsion = 16851.989437 eV Total energy + Delta-G solvation = -3507.528143 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.016 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.86302 -40.62594 -39.70668 -36.28930 -35.48004 -34.43215 -33.93259 -33.35260 -31.45623 -29.89999 -28.48296 -26.44350 -24.30786 -24.05368 -21.78858 -21.40372 -20.13681 -19.30392 -18.02409 -17.53423 -16.85688 -16.80693 -16.53422 -16.43226 -15.99252 -15.90175 -15.32521 -15.21966 -14.89872 -14.36370 -13.88372 -13.77063 -13.53736 -13.40512 -13.26328 -13.07683 -12.89118 -12.46549 -12.14919 -12.05466 -11.93940 -11.55527 -11.02363 -10.99556 -10.55732 -10.30941 -10.10419 -10.09476 -9.90778 -8.50593 -6.00853 -0.66916 -0.10680 0.29578 1.38464 1.43365 1.54016 1.67234 1.85422 1.91263 2.30414 2.51938 3.08280 3.16866 3.18662 3.49574 3.53713 3.71107 4.02646 4.17277 4.24131 4.43728 4.45443 4.61235 4.78095 4.80999 4.92059 5.07798 5.18521 5.38616 5.42939 5.91713 6.36601 6.48273 6.51365 7.02020 7.04241 7.44441 7.94002 8.66004 Molecular weight = 341.02amu Principal moments of inertia in cm(-1) A = 0.021383 B = 0.002680 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.166962 B =10444.239614 C =11732.959869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.151 3.849 3 C -0.150 4.150 4 C -0.032 4.032 5 C -0.181 4.181 6 C 0.551 3.449 7 O -0.537 6.537 8 N -0.699 5.699 9 C 0.123 3.877 10 C 0.433 3.567 11 O -0.623 6.623 12 N -0.559 5.559 13 C -0.337 4.337 14 H 0.088 0.912 15 C -0.011 4.011 16 N -0.917 5.917 17 Si 0.996 3.004 18 H -0.269 1.269 19 H -0.273 1.273 20 H -0.269 1.269 21 C 0.159 3.841 22 Br 0.015 6.985 23 N -0.487 5.487 24 H 0.099 0.901 25 H 0.111 0.889 26 H 0.077 0.923 27 H 0.192 0.808 28 H 0.167 0.833 29 H 0.412 0.588 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.399 0.601 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.300 -6.972 0.005 23.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.011 3.989 3 C -0.170 4.170 4 C -0.058 4.058 5 C -0.189 4.189 6 C 0.337 3.663 7 O -0.415 6.415 8 N -0.354 5.354 9 C -0.005 4.005 10 C 0.221 3.779 11 O -0.511 6.511 12 N -0.194 5.194 13 C -0.466 4.466 14 H 0.106 0.894 15 C -0.211 4.211 16 N -0.557 5.557 17 Si 0.819 3.181 18 H -0.194 1.194 19 H -0.198 1.198 20 H -0.194 1.194 21 C -0.059 4.059 22 Br 0.100 6.900 23 N -0.199 5.199 24 H 0.117 0.883 25 H 0.129 0.871 26 H 0.096 0.904 27 H 0.209 0.791 28 H 0.184 0.816 29 H 0.251 0.749 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.233 0.767 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.278 -8.540 -0.007 23.859 hybrid contribution 1.280 1.575 0.019 2.029 sum -20.999 -6.965 0.012 22.124 Atomic orbital electron populations 1.20963 0.84887 1.05381 1.04907 1.22356 0.99274 0.87242 0.89986 1.22514 0.93627 1.01124 0.99720 1.22192 0.95945 0.96662 0.91038 1.20532 0.93904 0.94998 1.09433 1.18137 0.87031 0.83937 0.77183 1.90932 1.72517 1.28081 1.49957 1.45546 1.06098 1.09512 1.74218 1.20804 0.80873 0.94157 1.04618 1.20371 0.82985 0.90982 0.83610 1.90461 1.58576 1.43977 1.58090 1.41841 1.05325 1.08914 1.63338 1.19711 0.91370 0.85145 1.50406 0.89384 1.26130 0.95748 1.03473 0.95788 1.69678 1.04748 1.31995 1.49246 0.84937 0.77111 0.76870 0.79150 1.19410 1.19799 1.19424 1.22990 0.91571 0.92600 0.98781 1.96829 1.76710 1.19835 1.96586 1.67457 1.06871 1.31293 1.14254 0.88290 0.87087 0.90360 0.79074 0.81602 0.74871 0.88439 0.88428 0.76702 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.16 71.24 0.72 -0.14 16 2 C 0.15 2.50 6.78 42.57 0.29 2.79 16 3 C -0.15 -2.07 9.72 22.33 0.22 -1.85 16 4 C -0.03 -0.62 9.65 22.73 0.22 -0.40 16 5 C -0.18 -4.81 5.89 -19.98 -0.12 -4.93 16 6 C 0.55 17.37 7.77 86.77 0.67 18.05 16 7 O -0.54 -19.32 13.50 -3.89 -0.05 -19.38 16 8 N -0.70 -22.09 5.48 -469.78 -2.58 -24.66 16 9 C 0.12 4.31 6.15 85.63 0.53 4.84 16 10 C 0.43 19.26 7.85 87.65 0.69 19.94 16 11 O -0.62 -30.67 15.24 -3.08 -0.05 -30.72 16 12 N -0.56 -27.37 5.29 -306.98 -1.62 -28.99 16 13 C -0.34 -18.16 9.68 84.04 0.81 -17.35 16 14 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 15 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 16 N -0.92 -48.21 13.05 21.66 0.28 -47.93 16 17 Si 1.00 41.01 29.55 68.60 2.03 43.04 16 18 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 19 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 21 C 0.16 4.40 7.21 85.04 0.61 5.01 16 22 Br 0.02 0.44 30.58 -20.37 -0.62 -0.18 16 23 N -0.49 -11.76 10.22 -177.77 -1.82 -13.57 16 24 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.11 0.30 8.07 -2.39 -0.02 0.28 16 26 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.19 0.98 8.06 -2.91 -0.02 0.96 16 28 H 0.17 2.68 6.52 -2.91 -0.02 2.66 16 29 H 0.41 12.33 5.54 -92.71 -0.51 11.82 16 30 H 0.10 3.26 8.14 -2.38 -0.02 3.24 16 31 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 33 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -67.89 314.73 0.63 -67.26 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.06 Total: 29.24 kcal Atomic # 6 Polarization: 20.78 SS G_CDS: 5.11 Total: 25.89 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -5.73 Total: -115.16 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -0.10 Total: -50.09 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 35 Polarization: 0.44 SS G_CDS: -0.62 Total: -0.18 kcal Total: -67.89 0.63 -67.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804819945.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.086 kcal (2) G-P(sol) polarization free energy of solvation -67.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds