Wall clock time and date at job start Sat Apr 11 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 119.99964 * 2 1 4 4 H 1.48500 * 109.46747 * 269.99384 * 3 2 1 5 5 H 1.48496 * 109.46901 * 29.99504 * 3 2 1 6 6 H 1.48501 * 109.46861 * 149.99672 * 3 2 1 7 7 C 1.38950 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99392 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00169 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99695 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00420 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99519 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.46842 * 179.97438 * 12 10 9 14 14 C 1.34774 * 119.99809 * 180.02562 * 13 12 10 15 15 O 1.21274 * 120.00115 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99953 * 179.97438 * 14 13 12 17 17 C 1.50699 * 109.46929 * 179.97438 * 16 14 13 18 18 C 1.38626 * 120.41858 * 99.98302 * 17 16 14 19 19 C 1.38659 * 118.43114 * 180.02562 * 18 17 16 20 20 C 1.38196 * 119.18561 * 359.97438 * 19 18 17 21 21 N 1.31874 * 120.77462 * 0.02562 * 20 19 18 22 22 C 1.31952 * 121.71015 * 0.02562 * 21 20 19 23 23 Br 1.89101 * 119.62611 * 179.97438 * 22 21 20 24 24 H 0.96992 * 120.00060 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99872 * 359.97438 * 9 7 2 26 26 H 1.09000 * 109.46959 * 60.00311 * 12 10 9 27 27 H 1.08992 * 109.47130 * 299.99995 * 12 10 9 28 28 H 0.97000 * 120.00041 * 359.97438 * 13 12 10 29 29 H 1.08999 * 109.46730 * 59.99768 * 16 14 13 30 30 H 1.08999 * 109.47116 * 300.00189 * 16 14 13 31 31 H 1.08001 * 120.78511 * 0.03740 * 18 17 16 32 32 H 1.08003 * 120.40784 * 180.02562 * 19 18 17 33 33 H 1.08000 * 119.61434 * 180.28172 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0000 13 7 2.1958 -5.9765 -0.0005 14 6 1.7465 -7.2471 -0.0016 15 8 0.5542 -7.4687 -0.0017 16 6 2.7259 -8.3926 -0.0027 17 6 1.9723 -9.6977 -0.0032 18 6 1.8003 -10.4084 -1.1809 19 6 1.0997 -11.6041 -1.1340 20 6 0.5999 -12.0453 0.0765 21 7 0.7822 -11.3434 1.1779 22 6 1.4427 -10.2011 1.1710 23 35 1.6687 -9.2423 2.7852 24 1 -0.4850 0.8400 -0.0004 25 1 0.3533 -2.3907 0.0005 26 1 0.6175 -4.9205 -0.8903 27 1 0.6168 -4.9209 0.8896 28 1 3.1494 -5.7992 -0.0008 29 1 3.3526 -8.3356 0.8872 30 1 3.3525 -8.3341 -0.8927 31 1 2.2027 -10.0397 -2.1129 32 1 0.9473 -12.1839 -2.0324 33 1 0.0571 -12.9779 0.1217 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804821138.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:03 Heat of formation + Delta-G solvation = -38.157289 kcal Electronic energy + Delta-G solvation = -20327.296294 eV Core-core repulsion = 16820.202601 eV Total energy + Delta-G solvation = -3507.093693 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.016 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72227 -39.40541 -38.11731 -34.51527 -33.97691 -33.69178 -32.96913 -31.41006 -30.42885 -28.86643 -26.96545 -24.52383 -23.60751 -22.73268 -20.25311 -19.59852 -18.15350 -17.36758 -17.13600 -17.02086 -15.99701 -15.49357 -15.33156 -14.96573 -14.65498 -14.31313 -14.06385 -13.93874 -13.61212 -13.43485 -13.24677 -12.57571 -12.21707 -12.02236 -11.78020 -11.64960 -11.15317 -11.12267 -10.48370 -10.47662 -10.34047 -10.18448 -9.85725 -9.74872 -9.65745 -9.07297 -8.83603 -8.65787 -8.12414 -6.53453 -3.95628 0.59671 0.88201 1.24072 2.75559 3.10133 3.15882 3.21161 3.26587 3.52027 3.71651 4.06343 4.10388 4.39647 4.47805 4.62170 4.81816 4.85451 4.95561 5.05819 5.15029 5.19069 5.39846 5.66296 5.78904 5.88586 5.94107 6.04515 6.18341 6.62747 7.43165 7.44064 7.74025 7.89718 8.37542 8.43478 9.02446 9.36999 9.84615 10.63417 Molecular weight = 341.02amu Principal moments of inertia in cm(-1) A = 0.025298 B = 0.002555 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.549935 B =10955.427967 C =11461.628207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.110 3.890 13 N -0.705 5.705 14 C 0.516 3.484 15 O -0.538 6.538 16 C -0.110 4.110 17 C -0.080 4.080 18 C -0.059 4.059 19 C -0.159 4.159 20 C 0.104 3.896 21 N -0.461 5.461 22 C 0.140 3.860 23 Br -0.003 7.003 24 H 0.274 0.726 25 H 0.396 0.604 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.411 0.589 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.936 -22.952 -0.283 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.213 3.787 11 O -0.484 6.484 12 C -0.018 4.018 13 N -0.359 5.359 14 C 0.301 3.699 15 O -0.415 6.415 16 C -0.150 4.150 17 C -0.085 4.085 18 C -0.086 4.086 19 C -0.179 4.179 20 C -0.055 4.055 21 N -0.171 5.171 22 C -0.077 4.077 23 Br 0.082 6.918 24 H 0.084 0.916 25 H 0.230 0.770 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.249 0.751 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.477 -22.848 1.136 23.010 hybrid contribution 0.382 1.053 -1.170 1.619 sum 2.859 -21.796 -0.034 21.983 Atomic orbital electron populations 1.69612 1.06026 1.28564 1.49241 1.25331 0.95662 0.99953 0.96757 0.85814 0.79245 0.80489 0.78498 1.20253 1.20781 1.19295 1.19729 0.93458 0.81990 1.48305 0.87660 1.41803 1.09497 1.04495 1.62543 1.19735 0.88290 0.84984 0.85650 1.90492 1.13686 1.86821 1.57429 1.20952 0.91856 0.85709 1.03272 1.45636 1.11639 1.04437 1.74172 1.20119 0.89399 0.83524 0.76840 1.90721 1.16451 1.84726 1.49634 1.20757 0.98008 0.89726 1.06552 1.20086 0.99022 0.96387 0.92956 1.21520 0.95819 0.93745 0.97478 1.22226 0.98641 0.97142 0.99864 1.22800 0.96546 0.98784 0.87396 1.67454 1.12875 1.05316 1.31456 1.22655 0.98501 0.94162 0.92370 1.96815 1.95471 1.71110 1.28435 0.91560 0.77031 0.89874 0.89791 0.75061 0.86838 0.86993 0.83761 0.83937 0.81908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.77 13.05 55.50 0.72 -23.04 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.38 29.55 -169.99 -5.02 15.36 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.31 -8.22 9.68 -14.93 -0.14 -8.36 16 8 H 0.11 2.95 7.16 -52.48 -0.38 2.57 16 9 N -0.55 -13.46 5.29 -10.96 -0.06 -13.52 16 10 C 0.43 9.61 7.85 -10.98 -0.09 9.52 16 11 O -0.60 -14.91 15.24 5.55 0.08 -14.83 16 12 C 0.11 1.97 6.15 -5.19 -0.03 1.94 16 13 N -0.70 -11.08 5.53 -61.47 -0.34 -11.42 16 14 C 0.52 7.61 7.44 -10.98 -0.08 7.53 16 15 O -0.54 -9.70 15.95 5.56 0.09 -9.61 16 16 C -0.11 -1.18 5.27 -29.03 -0.15 -1.33 16 17 C -0.08 -0.92 4.44 -104.46 -0.46 -1.38 16 18 C -0.06 -0.54 9.82 -39.28 -0.39 -0.92 16 19 C -0.16 -1.25 10.11 -39.44 -0.40 -1.65 16 20 C 0.10 0.97 11.18 -17.55 -0.20 0.77 16 21 N -0.46 -5.88 10.32 -11.65 -0.12 -6.00 16 22 C 0.14 1.83 7.05 -17.48 -0.12 1.71 16 23 Br 0.00 -0.04 31.87 -68.01 -2.17 -2.20 16 24 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.40 9.37 7.90 -40.82 -0.32 9.05 16 26 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 27 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.41 6.22 7.44 -40.82 -0.30 5.92 16 29 H 0.11 1.10 7.16 -51.93 -0.37 0.73 16 30 H 0.11 0.86 8.03 -51.93 -0.42 0.44 16 31 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 33 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 319.07 15.07 4.81 4.81 Total: -1.00 -32.89 319.07 -7.20 -40.10 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -3.04 Total: 11.94 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -2.16 Total: 8.41 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.21 Total: -53.97 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: 0.17 Total: -24.44 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -2.17 Total: -2.20 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.89 -7.20 -40.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821138.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.939 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds