Wall clock time and date at job start Sat Apr 11 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 119.99964 * 2 1 4 4 H 1.48500 * 109.46747 * 269.99384 * 3 2 1 5 5 H 1.48496 * 109.46901 * 29.99504 * 3 2 1 6 6 H 1.48501 * 109.46861 * 149.99672 * 3 2 1 7 7 C 1.38950 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99392 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00169 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99695 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00420 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99519 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.46842 * 179.97438 * 12 10 9 14 14 C 1.34774 * 119.99809 * 180.02562 * 13 12 10 15 15 O 1.21274 * 120.00115 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99953 * 179.97438 * 14 13 12 17 17 C 1.50699 * 109.46929 * 179.97438 * 16 14 13 18 18 C 1.38626 * 120.41858 * 99.98302 * 17 16 14 19 19 C 1.38659 * 118.43114 * 180.02562 * 18 17 16 20 20 C 1.38196 * 119.18561 * 359.97438 * 19 18 17 21 21 N 1.31874 * 120.77462 * 0.02562 * 20 19 18 22 22 C 1.31952 * 121.71015 * 0.02562 * 21 20 19 23 23 Br 1.89101 * 119.62611 * 179.97438 * 22 21 20 24 24 H 0.96992 * 120.00060 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99872 * 359.97438 * 9 7 2 26 26 H 1.09000 * 109.46959 * 60.00311 * 12 10 9 27 27 H 1.08992 * 109.47130 * 299.99995 * 12 10 9 28 28 H 0.97000 * 120.00041 * 359.97438 * 13 12 10 29 29 H 1.08999 * 109.46730 * 59.99768 * 16 14 13 30 30 H 1.08999 * 109.47116 * 300.00189 * 16 14 13 31 31 H 1.08001 * 120.78511 * 0.03740 * 18 17 16 32 32 H 1.08003 * 120.40784 * 180.02562 * 19 18 17 33 33 H 1.08000 * 119.61434 * 180.28172 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0000 13 7 2.1958 -5.9765 -0.0005 14 6 1.7465 -7.2471 -0.0016 15 8 0.5542 -7.4687 -0.0017 16 6 2.7259 -8.3926 -0.0027 17 6 1.9723 -9.6977 -0.0032 18 6 1.8003 -10.4084 -1.1809 19 6 1.0997 -11.6041 -1.1340 20 6 0.5999 -12.0453 0.0765 21 7 0.7822 -11.3434 1.1779 22 6 1.4427 -10.2011 1.1710 23 35 1.6687 -9.2423 2.7852 24 1 -0.4850 0.8400 -0.0004 25 1 0.3533 -2.3907 0.0005 26 1 0.6175 -4.9205 -0.8903 27 1 0.6168 -4.9209 0.8896 28 1 3.1494 -5.7992 -0.0008 29 1 3.3526 -8.3356 0.8872 30 1 3.3525 -8.3341 -0.8927 31 1 2.2027 -10.0397 -2.1129 32 1 0.9473 -12.1839 -2.0324 33 1 0.0571 -12.9779 0.1217 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804821138.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:03 Heat of formation + Delta-G solvation = -62.727368 kcal Electronic energy + Delta-G solvation = -20328.361733 eV Core-core repulsion = 16820.202601 eV Total energy + Delta-G solvation = -3508.159132 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.016 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.57838 -40.70293 -39.77324 -36.25076 -35.27398 -34.82874 -33.72076 -33.37154 -31.31080 -30.01011 -28.25863 -26.30308 -24.35897 -23.59304 -21.43348 -21.35757 -20.06680 -18.62179 -17.95272 -17.82421 -17.27340 -17.11201 -16.68276 -16.34660 -15.93759 -15.61887 -15.49072 -15.29433 -14.60064 -14.43292 -14.08119 -13.89970 -13.81867 -13.54412 -13.13841 -12.89549 -12.66654 -12.45463 -12.13029 -11.99210 -11.56570 -11.40772 -11.19317 -10.73423 -10.62268 -10.54771 -10.18302 -10.07551 -9.86931 -8.51029 -6.01204 -0.15454 0.17085 0.38606 1.36421 1.42864 1.55403 1.60876 1.91642 2.03787 2.31706 2.67121 3.14170 3.16349 3.32086 3.69082 3.76135 3.87872 4.01503 4.17614 4.25109 4.39757 4.44806 4.45460 4.52097 4.67868 5.00936 5.11565 5.28780 5.38704 5.55694 5.91976 6.46020 6.54573 6.69227 7.03650 7.18450 7.44877 7.94477 8.65955 Molecular weight = 341.02amu Principal moments of inertia in cm(-1) A = 0.025298 B = 0.002555 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.549935 B =10955.427967 C =11461.628207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.561 5.561 10 C 0.434 3.566 11 O -0.622 6.622 12 C 0.123 3.877 13 N -0.705 5.705 14 C 0.519 3.481 15 O -0.571 6.571 16 C -0.103 4.103 17 C -0.096 4.096 18 C -0.062 4.062 19 C -0.146 4.146 20 C 0.094 3.906 21 N -0.495 5.495 22 C 0.113 3.887 23 Br -0.024 7.024 24 H 0.279 0.721 25 H 0.398 0.602 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.415 0.585 29 H 0.121 0.879 30 H 0.148 0.852 31 H 0.175 0.825 32 H 0.183 0.817 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.346 -24.021 -1.807 24.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.212 4.212 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.465 4.465 8 H 0.105 0.895 9 N -0.197 5.197 10 C 0.221 3.779 11 O -0.510 6.510 12 C -0.005 4.005 13 N -0.360 5.360 14 C 0.306 3.694 15 O -0.450 6.450 16 C -0.143 4.143 17 C -0.101 4.101 18 C -0.089 4.089 19 C -0.166 4.166 20 C -0.064 4.064 21 N -0.205 5.205 22 C -0.102 4.102 23 Br 0.060 6.940 24 H 0.089 0.911 25 H 0.232 0.768 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.254 0.746 29 H 0.139 0.861 30 H 0.166 0.834 31 H 0.192 0.808 32 H 0.200 0.800 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.891 -23.939 -0.387 24.116 hybrid contribution 0.223 1.222 -0.753 1.453 sum 3.115 -22.717 -1.139 22.958 Atomic orbital electron populations 1.69679 1.07043 1.29612 1.49417 1.26129 0.96514 1.02704 0.95830 0.84877 0.77926 0.76508 0.78746 1.19469 1.19784 1.19398 1.19741 0.92977 0.83529 1.50291 0.89480 1.41865 1.09575 1.04689 1.63524 1.20425 0.88144 0.85884 0.83452 1.90469 1.15054 1.87529 1.57918 1.20731 0.91770 0.84034 1.03978 1.45657 1.11370 1.04352 1.74610 1.20773 0.89643 0.83674 0.75265 1.90706 1.18209 1.85098 1.51022 1.20790 0.97190 0.87617 1.08668 1.20252 0.99620 0.96880 0.93338 1.21988 0.95380 0.93852 0.97648 1.22686 0.96565 0.96654 1.00652 1.23433 0.96354 0.99408 0.87227 1.67389 1.13870 1.05848 1.33400 1.22721 1.00240 0.94961 0.92324 1.96762 1.95623 1.71661 1.29943 0.91105 0.76792 0.88807 0.89348 0.74608 0.86063 0.83418 0.80805 0.79977 0.79060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.70 13.05 21.66 0.28 -48.41 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 3 Si 1.00 41.50 29.55 68.60 2.03 43.53 16 4 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.34 -18.35 9.68 84.04 0.81 -17.54 16 8 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 9 N -0.56 -27.92 5.29 -306.98 -1.62 -29.54 16 10 C 0.43 19.59 7.85 87.66 0.69 20.28 16 11 O -0.62 -31.22 15.24 -3.04 -0.05 -31.26 16 12 C 0.12 4.36 6.15 85.63 0.53 4.89 16 13 N -0.71 -21.51 5.53 -466.79 -2.58 -24.09 16 14 C 0.52 14.67 7.44 87.66 0.65 15.33 16 15 O -0.57 -20.15 15.95 -3.01 -0.05 -20.20 16 16 C -0.10 -2.00 5.27 29.10 0.15 -1.85 16 17 C -0.10 -2.03 4.44 -19.76 -0.09 -2.12 16 18 C -0.06 -0.93 9.82 22.46 0.22 -0.71 16 19 C -0.15 -1.77 10.11 22.36 0.23 -1.54 16 20 C 0.09 1.54 11.18 84.68 0.95 2.49 16 21 N -0.49 -12.21 10.32 -190.77 -1.97 -14.18 16 22 C 0.11 2.90 7.05 84.69 0.60 3.50 16 23 Br -0.02 -0.64 31.87 -20.37 -0.65 -1.29 16 24 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 25 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 26 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 27 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.42 12.17 7.44 -92.71 -0.69 11.48 16 29 H 0.12 2.19 7.16 -2.39 -0.02 2.17 16 30 H 0.15 1.76 8.03 -2.39 -0.02 1.74 16 31 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 33 H 0.19 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -72.02 319.07 0.36 -71.66 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: -0.24 Total: 31.18 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: 5.20 Total: 22.61 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -5.89 Total: -116.22 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.09 Total: -51.46 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -0.65 Total: -1.29 kcal Total: -72.02 0.36 -71.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821138.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.933 kcal (2) G-P(sol) polarization free energy of solvation -72.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds