Wall clock time and date at job start Sat Apr 11 2020 06:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00112 * 2 1 4 4 H 1.48498 * 109.47223 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46643 * 299.99724 * 3 2 1 6 6 H 1.48497 * 109.46772 * 59.99527 * 3 2 1 7 7 C 1.37875 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00457 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99880 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46972 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99943 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00054 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00186 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47415 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.47168 * 59.99927 * 15 14 13 17 17 O 1.42902 * 109.46988 * 300.00266 * 15 14 13 18 18 C 1.50699 * 109.47252 * 180.02562 * 15 14 13 19 19 C 1.38265 * 119.98999 * 264.99886 * 18 15 14 20 20 C 1.38229 * 120.01891 * 179.97438 * 19 18 15 21 21 C 1.38235 * 120.00780 * 359.97438 * 20 19 18 22 22 C 1.38305 * 119.99362 * 359.97438 * 21 20 19 23 23 Br 1.89097 * 120.01210 * 180.02562 * 22 21 20 24 24 C 1.38194 * 119.99882 * 84.97428 * 18 15 14 25 25 H 0.96995 * 120.00154 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47313 * 60.00358 * 9 7 2 27 27 H 1.08999 * 109.47112 * 299.99988 * 9 7 2 28 28 H 1.08999 * 109.47488 * 59.99725 * 10 9 7 29 29 H 1.08999 * 109.46965 * 299.99800 * 10 9 7 30 30 H 0.97007 * 119.99638 * 0.02562 * 13 11 10 31 31 H 1.09005 * 109.46622 * 60.00380 * 14 13 11 32 32 H 1.08998 * 109.47704 * 300.00567 * 14 13 11 33 33 H 0.96702 * 113.99981 * 299.99896 * 17 15 14 34 34 H 1.07999 * 119.99413 * 359.72365 * 19 18 15 35 35 H 1.07992 * 119.99154 * 179.97438 * 20 19 18 36 36 H 1.07994 * 120.00678 * 180.02562 * 21 20 19 37 37 H 1.08001 * 120.00139 * 0.02858 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4918 -4.9672 0.0025 12 8 0.2790 -4.9672 0.0024 13 7 2.1657 -6.1344 0.0031 14 6 1.4333 -7.4031 0.0043 15 6 2.4275 -8.5660 0.0054 16 1 3.0541 -8.5074 0.8954 17 8 3.2492 -8.4914 -1.1614 18 6 1.6740 -9.8711 0.0060 19 6 1.4184 -10.5210 1.1993 20 6 0.7269 -11.7179 1.2006 21 6 0.2901 -12.2653 0.0087 22 6 0.5446 -11.6150 -1.1851 23 35 -0.0532 -12.3629 -2.8157 24 6 1.2382 -10.4179 -1.1860 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5572 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8713 -3.6039 0.8922 29 1 2.8726 -3.6047 -0.8877 30 1 3.1358 -6.1343 0.0035 31 1 0.8064 -7.4614 -0.8855 32 1 0.8068 -7.4602 0.8944 33 1 2.7571 -8.5375 -1.9925 34 1 1.7627 -10.0956 2.1304 35 1 0.5279 -12.2254 2.1329 36 1 -0.2505 -13.2001 0.0098 37 1 1.4380 -9.9101 -2.1180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812563851.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:07 Heat of formation + Delta-G solvation = -75.524452 kcal Electronic energy + Delta-G solvation = -20337.980221 eV Core-core repulsion = 16932.806509 eV Total energy + Delta-G solvation = -3405.173712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.32963 -39.08704 -37.42107 -34.13643 -33.43693 -32.97766 -31.90034 -31.00388 -29.81848 -28.39299 -25.71816 -23.93558 -22.85616 -21.60734 -21.45550 -19.62650 -18.07914 -17.04403 -16.57022 -16.49621 -15.78869 -15.35359 -15.22765 -15.05684 -14.44941 -14.39337 -14.14966 -13.91258 -13.65145 -13.05404 -12.95562 -12.37436 -12.17417 -11.92054 -11.82899 -11.58849 -11.17476 -11.14967 -10.93917 -10.76657 -10.60869 -10.52748 -9.95440 -9.66474 -9.42250 -9.19649 -9.12609 -8.98808 -8.83628 -8.31780 -5.95646 -3.99929 0.60337 0.75161 1.18815 3.04263 3.24232 3.33087 3.39550 3.42511 3.46214 4.00626 4.19200 4.28270 4.48359 4.53272 4.54976 4.73157 4.79592 4.93682 5.14831 5.34311 5.39406 5.45402 5.54462 5.67513 5.79221 5.83591 5.97704 6.23964 6.25887 6.27227 6.65011 6.90374 7.16266 7.75383 7.86825 7.87659 8.07760 8.39367 8.76879 9.08971 9.63691 11.15387 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.024771 B = 0.001918 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.099823 B =14597.034042 C =15022.726151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.509 3.491 12 O -0.536 6.536 13 N -0.740 5.740 14 C 0.093 3.907 15 C 0.139 3.861 16 H 0.119 0.881 17 O -0.549 6.549 18 C -0.107 4.107 19 C -0.091 4.091 20 C -0.110 4.110 21 C -0.091 4.091 22 C -0.087 4.087 23 Br -0.049 7.049 24 C -0.080 4.080 25 H 0.260 0.740 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.402 0.598 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.377 0.623 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.692 -31.428 -1.524 31.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.298 3.702 12 O -0.411 6.411 13 N -0.395 5.395 14 C -0.032 4.032 15 C 0.080 3.920 16 H 0.136 0.864 17 O -0.355 6.355 18 C -0.109 4.109 19 C -0.110 4.110 20 C -0.129 4.129 21 C -0.110 4.110 22 C -0.166 4.166 23 Br 0.037 6.963 24 C -0.100 4.100 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.237 0.763 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.226 0.774 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.878 -31.532 -1.706 31.709 hybrid contribution 0.451 0.915 -0.022 1.021 sum 3.330 -30.616 -1.729 30.845 Atomic orbital electron populations 1.70006 1.06062 1.26466 1.50345 1.25033 0.94830 0.99260 0.95334 0.86533 0.80016 0.83827 0.77574 1.19735 1.21019 1.21031 1.21266 0.92985 0.90994 1.51182 0.92520 1.18907 0.93193 0.89425 0.98602 1.21862 1.00697 0.91783 1.02572 1.21608 0.88635 0.85631 0.74330 1.90675 1.14520 1.87645 1.48251 1.46094 1.10342 1.04933 1.78108 1.21889 0.94516 0.83495 1.03304 1.21079 0.91382 0.89172 0.90396 0.86369 1.86636 1.36832 1.96196 1.15801 1.20440 0.99571 0.97476 0.93431 1.21186 0.97226 0.94772 0.97768 1.21192 0.97920 0.95855 0.97951 1.21174 0.98973 0.99885 0.91009 1.21757 1.04370 0.98209 0.92288 1.96763 1.88439 1.83668 1.27465 1.20831 0.96423 0.94173 0.98575 0.93012 0.95840 0.95849 0.90209 0.90157 0.76343 0.91380 0.90683 0.77381 0.84858 0.84732 0.84870 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.56 13.29 55.43 0.74 -26.82 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.53 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.61 5.64 -27.88 -0.16 -2.77 16 11 C 0.51 9.69 7.83 -10.98 -0.09 9.61 16 12 O -0.54 -12.59 15.98 5.56 0.09 -12.51 16 13 N -0.74 -9.99 5.45 -60.29 -0.33 -10.32 16 14 C 0.09 1.06 5.32 -4.04 -0.02 1.04 16 15 C 0.14 1.16 3.30 -27.88 -0.09 1.07 16 16 H 0.12 0.87 8.05 -51.93 -0.42 0.45 16 17 O -0.55 -4.81 12.88 -35.23 -0.45 -5.26 16 18 C -0.11 -0.87 5.00 -104.63 -0.52 -1.39 16 19 C -0.09 -0.65 9.68 -39.57 -0.38 -1.03 16 20 C -0.11 -0.72 10.05 -39.59 -0.40 -1.12 16 21 C -0.09 -0.66 9.79 -39.56 -0.39 -1.05 16 22 C -0.09 -0.73 6.22 -39.52 -0.25 -0.97 16 23 Br -0.05 -0.40 33.70 -68.01 -2.29 -2.69 16 24 C -0.08 -0.66 9.07 -39.56 -0.36 -1.02 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.40 4.47 8.35 -40.82 -0.34 4.13 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.38 2.46 7.39 45.56 0.34 2.80 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.13 0.93 6.61 -52.49 -0.35 0.58 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -35.16 342.27 -9.41 -44.57 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.11 Total: 1.67 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -3.18 Total: -10.50 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.41 Total: -37.15 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.36 Total: -17.77 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -2.29 Total: -2.69 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.16 -9.41 -44.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812563851.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.959 kcal (2) G-P(sol) polarization free energy of solvation -35.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds