Wall clock time and date at job start Sat Apr 11 2020 06:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00112 * 2 1 4 4 H 1.48498 * 109.47223 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46643 * 299.99724 * 3 2 1 6 6 H 1.48497 * 109.46772 * 59.99527 * 3 2 1 7 7 C 1.37875 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00457 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99880 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46972 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99943 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00054 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00186 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47415 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.47168 * 59.99927 * 15 14 13 17 17 O 1.42902 * 109.46988 * 300.00266 * 15 14 13 18 18 C 1.50699 * 109.47252 * 180.02562 * 15 14 13 19 19 C 1.38265 * 119.98999 * 264.99886 * 18 15 14 20 20 C 1.38229 * 120.01891 * 179.97438 * 19 18 15 21 21 C 1.38235 * 120.00780 * 359.97438 * 20 19 18 22 22 C 1.38305 * 119.99362 * 359.97438 * 21 20 19 23 23 Br 1.89097 * 120.01210 * 180.02562 * 22 21 20 24 24 C 1.38194 * 119.99882 * 84.97428 * 18 15 14 25 25 H 0.96995 * 120.00154 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47313 * 60.00358 * 9 7 2 27 27 H 1.08999 * 109.47112 * 299.99988 * 9 7 2 28 28 H 1.08999 * 109.47488 * 59.99725 * 10 9 7 29 29 H 1.08999 * 109.46965 * 299.99800 * 10 9 7 30 30 H 0.97007 * 119.99638 * 0.02562 * 13 11 10 31 31 H 1.09005 * 109.46622 * 60.00380 * 14 13 11 32 32 H 1.08998 * 109.47704 * 300.00567 * 14 13 11 33 33 H 0.96702 * 113.99981 * 299.99896 * 17 15 14 34 34 H 1.07999 * 119.99413 * 359.72365 * 19 18 15 35 35 H 1.07992 * 119.99154 * 179.97438 * 20 19 18 36 36 H 1.07994 * 120.00678 * 180.02562 * 21 20 19 37 37 H 1.08001 * 120.00139 * 0.02858 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4918 -4.9672 0.0025 12 8 0.2790 -4.9672 0.0024 13 7 2.1657 -6.1344 0.0031 14 6 1.4333 -7.4031 0.0043 15 6 2.4275 -8.5660 0.0054 16 1 3.0541 -8.5074 0.8954 17 8 3.2492 -8.4914 -1.1614 18 6 1.6740 -9.8711 0.0060 19 6 1.4184 -10.5210 1.1993 20 6 0.7269 -11.7179 1.2006 21 6 0.2901 -12.2653 0.0087 22 6 0.5446 -11.6150 -1.1851 23 35 -0.0532 -12.3629 -2.8157 24 6 1.2382 -10.4179 -1.1860 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5572 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8713 -3.6039 0.8922 29 1 2.8726 -3.6047 -0.8877 30 1 3.1358 -6.1343 0.0035 31 1 0.8064 -7.4614 -0.8855 32 1 0.8068 -7.4602 0.8944 33 1 2.7571 -8.5375 -1.9925 34 1 1.7627 -10.0956 2.1304 35 1 0.5279 -12.2254 2.1329 36 1 -0.2505 -13.2001 0.0098 37 1 1.4380 -9.9101 -2.1180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812563851.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:07 Heat of formation + Delta-G solvation = -100.766840 kcal Electronic energy + Delta-G solvation = -20339.074813 eV Core-core repulsion = 16932.806509 eV Total energy + Delta-G solvation = -3406.268304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.09496 -40.37578 -38.20342 -35.60998 -35.27857 -33.61061 -33.02254 -32.43547 -30.46102 -29.42714 -27.48982 -24.98745 -23.51119 -23.18477 -22.26517 -21.10726 -18.83787 -18.73247 -17.66053 -17.26158 -17.22944 -16.53191 -16.46390 -16.22125 -15.81691 -15.45605 -14.97679 -14.58310 -14.47456 -14.31111 -14.27950 -14.10131 -13.38859 -13.21572 -12.93619 -12.82873 -12.45500 -12.43964 -12.15517 -11.91405 -11.77315 -11.63613 -11.43160 -11.27936 -11.25042 -10.72928 -10.57531 -10.10736 -9.95760 -9.70931 -8.17628 -6.31470 0.03860 0.19498 0.59552 1.42872 1.44192 1.57588 1.71865 2.17989 2.44142 2.57296 3.15520 3.35835 3.50568 3.71151 3.81952 3.98103 4.09566 4.14744 4.24519 4.35478 4.52397 4.53941 4.58521 4.69212 4.80407 4.86591 5.09875 5.13993 5.29838 5.40334 5.42649 5.52316 5.64491 5.76142 5.86533 6.18623 6.55551 6.62975 6.87530 7.35069 7.39081 8.95305 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.024771 B = 0.001918 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.099823 B =14597.034042 C =15022.726151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.511 3.489 12 O -0.591 6.591 13 N -0.712 5.712 14 C 0.092 3.908 15 C 0.157 3.843 16 H 0.135 0.865 17 O -0.556 6.556 18 C -0.118 4.118 19 C -0.095 4.095 20 C -0.111 4.111 21 C -0.096 4.096 22 C -0.103 4.103 23 Br -0.055 7.055 24 C -0.092 4.092 25 H 0.263 0.737 26 H -0.019 1.019 27 H -0.018 1.018 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.418 0.582 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.386 0.614 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.146 0.854 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.149 -32.119 -0.824 32.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.798 3.202 4 H -0.176 1.176 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.094 0.906 9 C 0.003 3.997 10 C -0.159 4.159 11 C 0.300 3.700 12 O -0.471 6.471 13 N -0.366 5.366 14 C -0.032 4.032 15 C 0.097 3.903 16 H 0.153 0.847 17 O -0.364 6.364 18 C -0.120 4.120 19 C -0.113 4.113 20 C -0.130 4.130 21 C -0.116 4.116 22 C -0.183 4.183 23 Br 0.031 6.969 24 C -0.112 4.112 25 H 0.071 0.929 26 H 0.000 1.000 27 H 0.001 0.999 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.256 0.744 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.236 0.764 34 H 0.171 0.829 35 H 0.178 0.822 36 H 0.164 0.836 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.404 -32.275 -1.014 32.740 hybrid contribution -0.344 1.031 -0.238 1.112 sum 5.059 -31.245 -1.252 31.676 Atomic orbital electron populations 1.70181 1.08317 1.27731 1.51634 1.26149 0.95734 1.03987 0.94705 0.85268 0.79324 0.78086 0.77532 1.17575 1.20677 1.20627 1.21757 0.94027 0.91607 1.50522 0.90560 1.18700 0.93746 0.92534 0.94684 1.21632 0.99287 0.90076 1.04910 1.21332 0.87754 0.86794 0.74162 1.90662 1.16738 1.88419 1.51235 1.45759 1.11109 1.04228 1.75534 1.22042 0.95234 0.83361 1.02586 1.20937 0.90621 0.87801 0.90953 0.84703 1.86615 1.37259 1.96099 1.16407 1.20443 1.00226 0.97496 0.93857 1.21508 0.96741 0.94876 0.98180 1.21522 0.97089 0.95677 0.98681 1.21451 0.98795 1.00363 0.90968 1.21902 1.05120 0.98660 0.92574 1.96748 1.88522 1.83695 1.27952 1.20983 0.96660 0.94422 0.99111 0.92874 1.00013 0.99911 0.87643 0.87817 0.74386 0.92437 0.91244 0.76357 0.82875 0.82208 0.83583 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.81 13.29 21.45 0.28 -59.53 16 2 C -0.01 -0.50 5.46 84.65 0.46 -0.03 16 3 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 4 H -0.25 -10.58 7.11 99.48 0.71 -9.88 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -30.86 9.11 25.60 0.23 -30.63 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.93 16 9 C 0.04 2.29 4.26 29.85 0.13 2.42 16 10 C -0.12 -4.74 5.64 29.85 0.17 -4.58 16 11 C 0.51 19.40 7.83 87.66 0.69 20.08 16 12 O -0.59 -28.79 15.98 -3.03 -0.05 -28.84 16 13 N -0.71 -18.13 5.45 -463.06 -2.52 -20.65 16 14 C 0.09 2.00 5.32 86.38 0.46 2.46 16 15 C 0.16 2.28 3.30 29.85 0.10 2.38 16 16 H 0.14 1.55 8.05 -2.39 -0.02 1.53 16 17 O -0.56 -8.56 12.88 -148.98 -1.92 -10.48 16 18 C -0.12 -1.72 5.00 -19.87 -0.10 -1.82 16 19 C -0.09 -1.13 9.68 22.27 0.22 -0.91 16 20 C -0.11 -1.20 10.05 22.27 0.22 -0.97 16 21 C -0.10 -1.25 9.79 22.29 0.22 -1.04 16 22 C -0.10 -1.64 6.22 22.31 0.14 -1.50 16 23 Br -0.05 -0.87 33.70 -20.37 -0.69 -1.55 16 24 C -0.09 -1.44 9.07 22.29 0.20 -1.24 16 25 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 26 H -0.02 -1.18 8.10 -2.39 -0.02 -1.19 16 27 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 28 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 29 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 30 H 0.42 8.09 8.35 -92.70 -0.77 7.32 16 31 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.39 4.45 7.39 -74.06 -0.55 3.90 16 34 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 36 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 37 H 0.14 1.85 6.61 -2.91 -0.02 1.83 16 Total: -1.00 -78.99 342.27 0.05 -78.94 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -0.22 Total: 11.07 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 3.13 Total: -15.37 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -2.24 Total: -80.18 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -1.97 Total: -39.32 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 35 Polarization: -0.87 SS G_CDS: -0.69 Total: -1.55 kcal Total: -78.99 0.05 -78.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812563851.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.824 kcal (2) G-P(sol) polarization free energy of solvation -78.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds