Wall clock time and date at job start Sat Apr 11 2020 06:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00345 * 2 1 4 4 H 1.48504 * 109.46901 * 239.99772 * 3 2 1 5 5 H 1.48501 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47596 * 119.99603 * 3 2 1 7 7 C 1.37883 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42910 * 110.36834 * 299.27491 * 9 7 2 11 11 C 1.54257 * 110.32628 * 61.45328 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.84329 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.50707 * 109.46999 * 74.48981 * 14 13 12 16 16 C 1.38189 * 120.02286 * 260.00510 * 15 14 13 17 17 C 1.38240 * 120.06774 * 179.97438 * 16 15 14 18 18 C 1.38287 * 120.11904 * 0.02562 * 17 16 15 19 19 C 1.38192 * 120.04805 * 359.97438 * 18 17 16 20 20 Br 1.89092 * 120.03651 * 180.02562 * 19 18 17 21 21 C 1.38671 * 120.01903 * 79.72741 * 15 14 13 22 22 O 1.35917 * 120.06479 * 359.97438 * 21 15 14 23 23 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 24 24 H 0.97002 * 119.99478 * 0.02562 * 1 2 3 25 25 H 0.96699 * 114.00154 * 60.72676 * 10 9 7 26 26 H 1.09002 * 110.32715 * 237.79384 * 11 9 7 27 27 H 1.08998 * 110.32251 * 359.89910 * 11 9 7 28 28 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 29 29 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 30 30 H 1.08997 * 109.47620 * 194.49319 * 14 13 12 31 31 H 1.08999 * 109.47148 * 314.49752 * 14 13 12 32 32 H 1.07999 * 119.96434 * 359.97438 * 16 15 14 33 33 H 1.08004 * 119.93671 * 179.97438 * 17 16 15 34 34 H 1.08002 * 119.97510 * 179.97438 * 18 17 16 35 35 H 0.96693 * 114.00208 * 89.99384 * 22 21 15 36 36 H 1.08999 * 110.41133 * 201.79165 * 23 13 12 37 37 H 1.09004 * 110.50861 * 79.40616 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4345 -2.6020 1.1689 11 6 0.3849 -2.6178 -1.2704 12 6 0.9178 -3.8657 -2.0067 13 7 2.3140 -4.0191 -1.5179 14 6 2.7937 -5.3933 -1.7165 15 6 3.0947 -5.6143 -3.1765 16 6 2.1821 -6.2727 -3.9786 17 6 2.4570 -6.4755 -5.3182 18 6 3.6456 -6.0208 -5.8592 19 6 4.5617 -5.3618 -5.0615 20 35 6.1866 -4.7395 -5.8019 21 6 4.2850 -5.1520 -3.7172 22 8 5.1814 -4.4988 -2.9317 23 6 2.2350 -3.6865 -0.0722 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2334 -1.9069 1.2444 26 1 -0.6629 -2.7545 -1.0032 27 1 0.5035 -1.7313 -1.8934 28 1 0.3255 -4.7428 -1.7457 29 1 0.9060 -3.7050 -3.0847 30 1 3.6996 -5.5501 -1.1310 31 1 2.0260 -6.0964 -1.3934 32 1 1.2532 -6.6292 -3.5586 33 1 1.7424 -6.9906 -5.9431 34 1 3.8582 -6.1808 -6.9060 35 1 5.8287 -5.0786 -2.5076 36 1 3.2146 -3.3920 0.3043 37 1 1.8501 -4.5345 0.4943 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843425875.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:14 Heat of formation + Delta-G solvation = -52.901575 kcal Electronic energy + Delta-G solvation = -21999.246947 eV Core-core repulsion = 18595.054237 eV Total energy + Delta-G solvation = -3404.192710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.06646 -38.15659 -36.65907 -34.99913 -32.63370 -32.04243 -31.14899 -29.04014 -28.93285 -27.84489 -25.51631 -23.99280 -22.47054 -21.47151 -20.19594 -19.39977 -18.32812 -16.97456 -16.17641 -16.12251 -15.32581 -15.17665 -14.78210 -14.39203 -13.94934 -13.77657 -13.56210 -13.03758 -12.83833 -12.40178 -12.24458 -11.97482 -11.79737 -11.62564 -11.14235 -11.05069 -10.95344 -10.77802 -10.53753 -10.45824 -10.41846 -10.29597 -10.24330 -9.86378 -9.00896 -8.80613 -8.62458 -8.50174 -8.08452 -7.78330 -6.10560 -4.15343 0.97248 1.12807 1.58234 3.33538 3.36690 3.40657 3.41889 4.11262 4.41507 4.58693 4.65876 4.89197 5.08085 5.17718 5.20060 5.33935 5.53688 5.63127 5.78145 5.85607 5.97329 5.98558 6.14738 6.18986 6.22042 6.38011 6.38906 6.54550 6.59998 6.90351 7.09464 7.25560 7.58386 7.65873 7.70472 7.73948 7.91783 8.27680 8.87028 9.47407 9.56423 10.97071 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.003637 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.602487 B = 7696.096321 C = 8808.809801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.250 3.750 10 O -0.596 6.596 11 C -0.120 4.120 12 C 0.033 3.967 13 N -0.486 5.486 14 C 0.088 3.912 15 C -0.087 4.087 16 C -0.085 4.085 17 C -0.127 4.127 18 C -0.084 4.084 19 C -0.123 4.123 20 Br -0.047 7.047 21 C 0.161 3.839 22 O -0.468 6.468 23 C 0.055 3.945 24 H 0.265 0.735 25 H 0.382 0.618 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.027 0.973 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.386 0.614 36 H 0.078 0.922 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.963 -15.041 -11.829 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.210 3.790 10 O -0.404 6.404 11 C -0.159 4.159 12 C -0.095 4.095 13 N -0.210 5.210 14 C -0.040 4.040 15 C -0.089 4.089 16 C -0.104 4.104 17 C -0.146 4.146 18 C -0.104 4.104 19 C -0.203 4.203 20 Br 0.039 6.961 21 C 0.113 3.887 22 O -0.277 6.277 23 C -0.073 4.073 24 H 0.075 0.925 25 H 0.232 0.768 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.242 0.758 36 H 0.096 0.904 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 8.876 -14.348 -12.433 20.958 hybrid contribution -0.610 0.392 0.418 0.837 sum 8.266 -13.955 -12.015 20.185 Atomic orbital electron populations 1.69690 1.05890 1.27308 1.51398 1.24990 0.94967 0.99358 0.94194 0.86550 0.79572 0.82489 0.78783 1.20110 1.21348 1.20192 1.21604 0.93555 0.90337 1.49935 0.91992 1.19235 0.86386 0.91555 0.81811 1.86081 1.52047 1.55790 1.46527 1.22842 0.98152 0.95571 0.99285 1.23208 0.88357 0.98325 0.99582 1.65397 1.21269 1.19384 1.14937 1.21036 1.00478 0.91620 0.90900 1.20196 0.94042 0.97534 0.97111 1.21141 0.98476 0.97246 0.93496 1.21085 0.96865 1.01315 0.95327 1.20962 0.93142 0.96821 0.99482 1.22326 0.95671 1.06541 0.95739 1.96679 1.27554 1.88291 1.83624 1.17950 0.90593 0.92172 0.88001 1.84996 1.44262 1.34512 1.63944 1.22985 1.00485 0.97270 0.86538 0.92497 0.76752 0.93158 0.90670 0.95507 0.91794 0.90210 0.94116 0.85304 0.85118 0.85031 0.75798 0.90400 0.95235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.62 10.82 55.43 0.60 -24.02 16 2 C 0.07 1.79 5.02 -17.82 -0.09 1.70 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.24 8.10 -34.44 -0.28 -14.51 16 8 H 0.06 1.74 7.53 -52.49 -0.40 1.34 16 9 C 0.25 6.30 1.05 -90.39 -0.10 6.21 16 10 O -0.60 -15.61 12.94 -35.23 -0.46 -16.07 16 11 C -0.12 -2.83 5.55 -25.35 -0.14 -2.97 16 12 C 0.03 0.65 6.06 -2.09 -0.01 0.64 16 13 N -0.49 -9.52 5.32 -231.26 -1.23 -10.75 16 14 C 0.09 1.34 4.63 -4.97 -0.02 1.32 16 15 C -0.09 -1.21 5.08 -104.48 -0.53 -1.74 16 16 C -0.08 -1.00 9.58 -39.60 -0.38 -1.38 16 17 C -0.13 -1.31 10.04 -39.56 -0.40 -1.71 16 18 C -0.08 -0.92 9.78 -39.58 -0.39 -1.31 16 19 C -0.12 -1.57 6.24 -39.38 -0.25 -1.82 16 20 Br -0.05 -0.56 33.16 -68.01 -2.26 -2.81 16 21 C 0.16 2.26 6.67 -39.20 -0.26 1.99 16 22 O -0.47 -6.62 12.08 -19.48 -0.24 -6.86 16 23 C 0.05 1.19 5.73 -2.18 -0.01 1.18 16 24 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.38 10.14 7.33 45.56 0.33 10.47 16 26 H 0.05 1.19 7.98 -51.93 -0.41 0.77 16 27 H 0.07 1.97 7.23 -51.93 -0.38 1.60 16 28 H 0.03 0.48 7.75 -51.93 -0.40 0.08 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.08 1.12 7.80 -51.93 -0.41 0.72 16 31 H 0.04 0.58 7.63 -51.93 -0.40 0.18 16 32 H 0.13 1.33 8.04 -52.49 -0.42 0.91 16 33 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.39 3.59 9.06 45.56 0.41 4.00 16 36 H 0.08 1.72 7.67 -51.93 -0.40 1.33 16 37 H 0.03 0.62 7.94 -51.93 -0.41 0.20 16 LS Contribution 327.26 15.07 4.93 4.93 Total: -1.00 -30.17 327.26 -9.80 -39.97 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -3.28 Total: 11.53 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -2.85 Total: -12.41 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: -0.63 Total: -34.77 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.69 Total: -22.92 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.26 Total: -2.81 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.17 -9.80 -39.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843425875.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.929 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds