Wall clock time and date at job start Sat Apr 11 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00345 * 2 1 4 4 H 1.48504 * 109.46901 * 239.99772 * 3 2 1 5 5 H 1.48501 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47596 * 119.99603 * 3 2 1 7 7 C 1.37883 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42910 * 110.36834 * 299.27491 * 9 7 2 11 11 C 1.54257 * 110.32628 * 61.45328 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.84329 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.50707 * 109.46999 * 74.48981 * 14 13 12 16 16 C 1.38189 * 120.02286 * 260.00510 * 15 14 13 17 17 C 1.38240 * 120.06774 * 179.97438 * 16 15 14 18 18 C 1.38287 * 120.11904 * 0.02562 * 17 16 15 19 19 C 1.38192 * 120.04805 * 359.97438 * 18 17 16 20 20 Br 1.89092 * 120.03651 * 180.02562 * 19 18 17 21 21 C 1.38671 * 120.01903 * 79.72741 * 15 14 13 22 22 O 1.35917 * 120.06479 * 359.97438 * 21 15 14 23 23 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 24 24 H 0.97002 * 119.99478 * 0.02562 * 1 2 3 25 25 H 0.96699 * 114.00154 * 60.72676 * 10 9 7 26 26 H 1.09002 * 110.32715 * 237.79384 * 11 9 7 27 27 H 1.08998 * 110.32251 * 359.89910 * 11 9 7 28 28 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 29 29 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 30 30 H 1.08997 * 109.47620 * 194.49319 * 14 13 12 31 31 H 1.08999 * 109.47148 * 314.49752 * 14 13 12 32 32 H 1.07999 * 119.96434 * 359.97438 * 16 15 14 33 33 H 1.08004 * 119.93671 * 179.97438 * 17 16 15 34 34 H 1.08002 * 119.97510 * 179.97438 * 18 17 16 35 35 H 0.96693 * 114.00208 * 89.99384 * 22 21 15 36 36 H 1.08999 * 110.41133 * 201.79165 * 23 13 12 37 37 H 1.09004 * 110.50861 * 79.40616 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4345 -2.6020 1.1689 11 6 0.3849 -2.6178 -1.2704 12 6 0.9178 -3.8657 -2.0067 13 7 2.3140 -4.0191 -1.5179 14 6 2.7937 -5.3933 -1.7165 15 6 3.0947 -5.6143 -3.1765 16 6 2.1821 -6.2727 -3.9786 17 6 2.4570 -6.4755 -5.3182 18 6 3.6456 -6.0208 -5.8592 19 6 4.5617 -5.3618 -5.0615 20 35 6.1866 -4.7395 -5.8019 21 6 4.2850 -5.1520 -3.7172 22 8 5.1814 -4.4988 -2.9317 23 6 2.2350 -3.6865 -0.0722 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2334 -1.9069 1.2444 26 1 -0.6629 -2.7545 -1.0032 27 1 0.5035 -1.7313 -1.8934 28 1 0.3255 -4.7428 -1.7457 29 1 0.9060 -3.7050 -3.0847 30 1 3.6996 -5.5501 -1.1310 31 1 2.0260 -6.0964 -1.3934 32 1 1.2532 -6.6292 -3.5586 33 1 1.7424 -6.9906 -5.9431 34 1 3.8582 -6.1808 -6.9060 35 1 5.8287 -5.0786 -2.5076 36 1 3.2146 -3.3920 0.3043 37 1 1.8501 -4.5345 0.4943 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843425875.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:13 Heat of formation + Delta-G solvation = -75.505090 kcal Electronic energy + Delta-G solvation = -22000.227109 eV Core-core repulsion = 18595.054237 eV Total energy + Delta-G solvation = -3405.172872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.08034 -39.79700 -37.62151 -36.73301 -34.14877 -33.77523 -32.27758 -30.46447 -29.86828 -29.62366 -27.09409 -25.65875 -23.40075 -22.65210 -21.63453 -21.28693 -19.30317 -19.02410 -17.29648 -17.14839 -16.84781 -16.62152 -16.37514 -15.82065 -15.69514 -14.96404 -14.83725 -14.42512 -14.07616 -14.02908 -13.55567 -13.41853 -13.25845 -13.00454 -12.84965 -12.76933 -12.44789 -12.36414 -12.12436 -12.05896 -11.89280 -11.73239 -11.43473 -11.18663 -10.93781 -10.58905 -10.12929 -9.74656 -9.53244 -9.25832 -8.18377 -6.30001 0.07283 0.22139 0.67064 1.40881 1.41895 1.49551 2.41187 2.49179 3.03555 3.21328 3.27826 3.65806 3.95055 3.99113 4.12345 4.29733 4.30199 4.33589 4.42248 4.46366 4.56985 4.67056 4.75605 4.83771 4.91043 5.06752 5.15113 5.26051 5.32135 5.37048 5.46342 5.67241 5.76282 5.79357 6.00350 6.19232 6.28913 6.74066 6.82076 7.37647 7.45554 8.87333 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.003637 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.602487 B = 7696.096321 C = 8808.809801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.027 3.973 3 Si 0.953 3.047 4 H -0.279 1.279 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.048 0.952 9 C 0.233 3.767 10 O -0.601 6.601 11 C -0.112 4.112 12 C 0.046 3.954 13 N -0.499 5.499 14 C 0.091 3.909 15 C -0.107 4.107 16 C -0.085 4.085 17 C -0.120 4.120 18 C -0.082 4.082 19 C -0.139 4.139 20 Br -0.047 7.047 21 C 0.145 3.855 22 O -0.490 6.490 23 C 0.065 3.935 24 H 0.267 0.733 25 H 0.376 0.624 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.146 0.854 33 H 0.165 0.835 34 H 0.153 0.847 35 H 0.401 0.599 36 H 0.067 0.933 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.872 -16.340 -13.152 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.172 4.172 3 Si 0.779 3.221 4 H -0.205 1.205 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.579 4.579 8 H 0.066 0.934 9 C 0.193 3.807 10 O -0.409 6.409 11 C -0.151 4.151 12 C -0.081 4.081 13 N -0.224 5.224 14 C -0.037 4.037 15 C -0.109 4.109 16 C -0.104 4.104 17 C -0.139 4.139 18 C -0.101 4.101 19 C -0.219 4.219 20 Br 0.038 6.962 21 C 0.097 3.903 22 O -0.302 6.302 23 C -0.063 4.063 24 H 0.077 0.923 25 H 0.226 0.774 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.164 0.836 33 H 0.182 0.818 34 H 0.171 0.829 35 H 0.260 0.740 36 H 0.085 0.915 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.796 -15.668 -13.754 22.628 hybrid contribution -0.564 0.763 0.794 1.237 sum 8.232 -14.906 -12.960 21.399 Atomic orbital electron populations 1.69762 1.06598 1.27941 1.51205 1.25615 0.95808 1.01958 0.93844 0.85696 0.78553 0.79363 0.78485 1.20466 1.20400 1.19864 1.21821 0.93139 0.92075 1.50829 0.93418 1.19492 0.87048 0.92225 0.81939 1.86074 1.52013 1.55451 1.47395 1.22615 0.97698 0.96276 0.98529 1.23056 0.88680 0.97063 0.99345 1.65324 1.21090 1.22947 1.13028 1.21061 1.00971 0.89215 0.92436 1.20144 0.94829 0.99359 0.96521 1.21406 0.98547 0.96432 0.94022 1.21459 0.96977 1.00370 0.95048 1.21322 0.92843 0.95593 1.00384 1.22485 0.96352 1.07376 0.95661 1.96667 1.27686 1.88424 1.83380 1.18138 0.90858 0.92714 0.88572 1.84939 1.44962 1.35903 1.64364 1.22762 0.98867 0.96209 0.88436 0.92344 0.77408 0.93846 0.94015 0.93201 0.91081 0.89592 0.92566 0.83635 0.81792 0.82894 0.74005 0.91464 0.94342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.43 10.82 21.45 0.23 -50.20 16 2 C 0.03 1.50 5.02 84.66 0.43 1.93 16 3 Si 0.95 44.41 29.54 68.60 2.03 46.43 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.54 -30.38 8.10 25.60 0.21 -30.18 16 8 H 0.05 2.74 7.53 -2.91 -0.02 2.72 16 9 C 0.23 11.86 1.05 -10.65 -0.01 11.84 16 10 O -0.60 -31.88 12.94 -148.98 -1.93 -33.81 16 11 C -0.11 -5.35 5.55 31.49 0.17 -5.17 16 12 C 0.05 1.76 6.06 86.42 0.52 2.28 16 13 N -0.50 -19.08 5.32 -885.57 -4.72 -23.80 16 14 C 0.09 2.60 4.63 85.56 0.40 2.99 16 15 C -0.11 -2.75 5.08 -19.77 -0.10 -2.85 16 16 C -0.09 -1.75 9.58 22.26 0.21 -1.53 16 17 C -0.12 -2.04 10.04 22.28 0.22 -1.81 16 18 C -0.08 -1.56 9.78 22.27 0.22 -1.34 16 19 C -0.14 -3.33 6.24 22.40 0.14 -3.19 16 20 Br -0.05 -1.07 33.16 -20.37 -0.68 -1.74 16 21 C 0.14 3.89 6.67 22.52 0.15 4.04 16 22 O -0.49 -13.69 12.08 -92.61 -1.12 -14.81 16 23 C 0.07 2.83 5.73 86.45 0.50 3.32 16 24 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 25 H 0.38 20.39 7.33 -74.06 -0.54 19.85 16 26 H 0.04 2.06 7.98 -2.39 -0.02 2.04 16 27 H 0.04 2.22 7.23 -2.39 -0.02 2.20 16 28 H 0.05 1.67 7.75 -2.38 -0.02 1.65 16 29 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.09 2.31 7.80 -2.39 -0.02 2.29 16 31 H 0.06 1.44 7.63 -2.39 -0.02 1.42 16 32 H 0.15 2.44 8.04 -2.91 -0.02 2.42 16 33 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.40 7.41 9.06 -74.06 -0.67 6.74 16 36 H 0.07 3.01 7.67 -2.39 -0.02 3.00 16 37 H 0.04 1.57 7.94 -2.39 -0.02 1.55 16 Total: -1.00 -64.73 327.26 -3.23 -67.96 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -0.10 Total: 29.63 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 3.06 Total: -19.67 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -4.48 Total: -74.00 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -3.05 Total: -48.61 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 35 Polarization: -1.07 SS G_CDS: -0.68 Total: -1.74 kcal Total: -64.73 -3.23 -67.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843425875.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.545 kcal (2) G-P(sol) polarization free energy of solvation -64.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds