Wall clock time and date at job start Sat Apr 11 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99950 * 2 1 4 4 H 1.48500 * 109.47254 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46849 * 299.99747 * 3 2 1 6 6 H 1.48504 * 109.47115 * 59.99541 * 3 2 1 7 7 C 1.37879 * 120.00507 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00181 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99431 * 0.02562 * 7 2 1 10 10 O 1.42901 * 110.87704 * 62.38965 * 9 7 2 11 11 C 1.55138 * 110.99288 * 298.54314 * 9 7 2 12 12 C 1.54319 * 103.02309 * 206.25989 * 11 9 7 13 13 N 1.47443 * 107.23266 * 22.28323 * 12 11 9 14 14 C 1.46900 * 111.00221 * 123.26129 * 13 12 11 15 15 C 1.50698 * 109.46991 * 69.87480 * 14 13 12 16 16 C 1.38191 * 120.02015 * 260.02199 * 15 14 13 17 17 C 1.38237 * 120.07389 * 179.97438 * 16 15 14 18 18 C 1.38295 * 120.11363 * 359.97438 * 17 16 15 19 19 C 1.38185 * 120.04647 * 0.02562 * 18 17 16 20 20 Br 1.89100 * 120.03735 * 180.02562 * 19 18 17 21 21 C 1.38670 * 120.02486 * 80.00447 * 15 14 13 22 22 O 1.35914 * 120.05861 * 0.03462 * 21 15 14 23 23 C 1.47843 * 108.56525 * 0.99045 * 13 12 11 24 24 H 0.96997 * 120.00323 * 0.02562 * 1 2 3 25 25 H 0.96696 * 113.99940 * 297.60605 * 10 9 7 26 26 H 1.09003 * 110.70986 * 87.87386 * 11 9 7 27 27 H 1.09000 * 110.85445 * 324.70985 * 11 9 7 28 28 H 1.09003 * 109.89067 * 262.87713 * 12 11 9 29 29 H 1.08995 * 109.89355 * 141.68908 * 12 11 9 30 30 H 1.09002 * 109.46646 * 309.87144 * 14 13 12 31 31 H 1.09006 * 109.46882 * 189.87333 * 14 13 12 32 32 H 1.08006 * 119.96730 * 359.97438 * 16 15 14 33 33 H 1.07999 * 119.94646 * 180.27559 * 17 16 15 34 34 H 1.08002 * 119.97461 * 180.02562 * 18 17 16 35 35 H 0.96700 * 114.00658 * 269.97956 * 22 21 15 36 36 H 1.09000 * 110.37217 * 94.73637 * 23 13 12 37 37 H 1.09007 * 110.37123 * 217.07580 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.4611 -2.6309 -1.1829 11 6 0.3734 -2.6341 1.2726 12 6 0.2532 -4.1621 1.4516 13 7 1.3919 -4.7757 0.7439 14 6 2.1856 -5.6148 1.6516 15 6 1.3947 -6.8435 2.0202 16 6 0.7341 -6.9026 3.2325 17 6 0.0079 -8.0289 3.5715 18 6 -0.0602 -9.0994 2.6986 19 6 0.5986 -9.0455 1.4851 20 35 0.5048 -10.5091 0.2913 21 6 1.3291 -7.9155 1.1429 22 8 1.9783 -7.8598 -0.0498 23 6 2.2186 -3.6984 0.1594 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2245 -1.9553 -1.2754 26 1 -0.6076 -2.1864 1.1133 27 1 0.8662 -2.1828 2.1338 28 1 -0.6842 -4.5134 1.0204 29 1 0.2947 -4.4158 2.5108 30 1 2.4224 -5.0508 2.5538 31 1 3.1098 -5.9126 1.1562 32 1 0.7852 -6.0678 3.9160 33 1 -0.5113 -8.0711 4.5176 34 1 -0.6285 -9.9781 2.9656 35 1 1.4473 -7.4931 -0.7700 36 1 3.0362 -3.4399 0.8324 37 1 2.6077 -4.0034 -0.8122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843425876.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:15 Heat of formation + Delta-G solvation = -77.118474 kcal Electronic energy + Delta-G solvation = -21922.751443 eV Core-core repulsion = 18517.508610 eV Total energy + Delta-G solvation = -3405.242833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.12395 -39.79462 -37.58485 -36.61641 -34.17501 -33.71566 -32.23965 -30.45777 -29.93479 -29.74023 -27.17008 -25.66981 -23.39692 -22.67776 -21.41299 -21.39297 -19.23954 -18.97828 -17.29694 -17.04952 -16.88717 -16.74871 -16.35915 -15.88065 -15.74720 -15.16451 -14.62158 -14.37510 -14.12814 -13.87101 -13.63470 -13.40230 -13.14634 -13.03254 -12.91415 -12.80996 -12.63457 -12.27816 -12.21376 -12.15826 -11.77530 -11.63499 -11.45093 -11.19498 -11.07612 -10.60486 -10.07759 -9.72687 -9.54470 -9.17241 -8.21476 -6.37042 0.06568 0.20463 0.65760 1.38517 1.42692 1.52568 2.37621 2.47555 3.03159 3.21828 3.31906 3.65054 3.91512 4.04560 4.08468 4.15789 4.29605 4.32999 4.44786 4.46600 4.62195 4.71721 4.79945 4.90107 4.91513 5.08826 5.14029 5.27134 5.33063 5.43902 5.49735 5.56658 5.74012 5.81243 5.96285 6.21021 6.27604 6.68959 6.71986 7.34772 7.46210 8.83650 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.028711 B = 0.002820 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.989135 B = 9928.141677 C =10311.902597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.032 3.968 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.561 4.561 8 H 0.053 0.947 9 C 0.234 3.766 10 O -0.587 6.587 11 C -0.135 4.135 12 C 0.056 3.944 13 N -0.520 5.520 14 C 0.094 3.906 15 C -0.104 4.104 16 C -0.088 4.088 17 C -0.118 4.118 18 C -0.081 4.081 19 C -0.136 4.136 20 Br -0.044 7.044 21 C 0.142 3.858 22 O -0.494 6.494 23 C 0.069 3.931 24 H 0.268 0.732 25 H 0.371 0.629 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.404 0.596 36 H 0.050 0.950 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.509 -19.377 7.392 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.169 4.169 3 Si 0.783 3.217 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.599 4.599 8 H 0.071 0.929 9 C 0.194 3.806 10 O -0.394 6.394 11 C -0.174 4.174 12 C -0.071 4.071 13 N -0.244 5.244 14 C -0.033 4.033 15 C -0.106 4.106 16 C -0.107 4.107 17 C -0.137 4.137 18 C -0.101 4.101 19 C -0.215 4.215 20 Br 0.041 6.959 21 C 0.094 3.906 22 O -0.306 6.306 23 C -0.058 4.058 24 H 0.077 0.923 25 H 0.219 0.781 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.161 0.839 33 H 0.182 0.818 34 H 0.173 0.827 35 H 0.263 0.737 36 H 0.068 0.932 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.002 -20.907 6.749 21.993 hybrid contribution -0.015 2.706 0.408 2.737 sum -1.017 -18.201 7.157 19.584 Atomic orbital electron populations 1.69826 1.06770 1.27992 1.50312 1.25656 0.95786 1.02132 0.93305 0.85530 0.78964 0.79527 0.77697 1.19608 1.20605 1.20335 1.21855 0.93485 0.92230 1.52373 0.92862 1.19777 0.87511 0.91248 0.82041 1.86131 1.51377 1.56391 1.45538 1.23045 1.00831 0.94273 0.99230 1.22720 0.94266 0.93405 0.96751 1.63550 1.08708 1.20398 1.31768 1.21069 0.95554 0.91210 0.95499 1.20125 1.00416 0.94462 0.95583 1.21410 0.95036 0.99055 0.95233 1.21459 0.99247 0.92133 1.00833 1.21325 0.97332 1.00300 0.91128 1.22462 1.05506 0.95028 0.98554 1.96669 1.97963 1.39802 1.61477 1.18091 0.92727 0.91700 0.88051 1.84675 1.42360 1.85835 1.17760 1.22810 0.94752 0.89866 0.98407 0.92266 0.78086 0.92613 0.93695 0.92288 0.91918 0.93281 0.90058 0.83935 0.81805 0.82724 0.73658 0.93169 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.10 10.75 21.45 0.23 -47.87 16 2 C 0.03 1.67 5.29 84.66 0.45 2.12 16 3 Si 0.96 41.73 29.54 68.60 2.03 43.76 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.56 -29.84 8.27 25.60 0.21 -29.62 16 8 H 0.05 2.84 7.79 -2.91 -0.02 2.81 16 9 C 0.23 11.44 0.87 -10.16 -0.01 11.43 16 10 O -0.59 -30.59 13.16 -148.98 -1.96 -32.55 16 11 C -0.13 -6.02 5.37 31.77 0.17 -5.85 16 12 C 0.06 2.05 6.40 86.65 0.55 2.60 16 13 N -0.52 -18.60 5.15 -890.08 -4.58 -23.18 16 14 C 0.09 2.79 4.37 85.56 0.37 3.16 16 15 C -0.10 -2.72 4.96 -19.77 -0.10 -2.81 16 16 C -0.09 -1.87 8.82 22.26 0.20 -1.67 16 17 C -0.12 -2.02 10.04 22.28 0.22 -1.79 16 18 C -0.08 -1.51 9.78 22.27 0.22 -1.30 16 19 C -0.14 -3.17 6.24 22.40 0.14 -3.03 16 20 Br -0.04 -0.97 33.16 -20.37 -0.68 -1.64 16 21 C 0.14 3.77 6.67 22.52 0.15 3.92 16 22 O -0.49 -13.51 12.07 -92.58 -1.12 -14.63 16 23 C 0.07 2.90 5.86 86.77 0.51 3.41 16 24 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 25 H 0.37 19.71 7.56 -74.06 -0.56 19.15 16 26 H 0.06 2.70 7.54 -2.39 -0.02 2.68 16 27 H 0.04 2.05 8.04 -2.39 -0.02 2.03 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.06 1.95 6.20 -2.39 -0.01 1.94 16 30 H 0.05 1.39 7.82 -2.39 -0.02 1.37 16 31 H 0.08 2.46 7.78 -2.38 -0.02 2.44 16 32 H 0.14 2.58 7.65 -2.91 -0.02 2.56 16 33 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 35 H 0.40 9.78 9.06 -74.06 -0.67 9.11 16 36 H 0.05 2.05 7.70 -2.39 -0.02 2.03 16 37 H 0.06 2.76 8.14 -2.38 -0.02 2.74 16 Total: -1.00 -58.36 325.92 -3.11 -61.47 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: -0.12 Total: 34.08 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 3.09 Total: -19.44 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -4.35 Total: -71.06 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -3.08 Total: -47.17 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 35 Polarization: -0.97 SS G_CDS: -0.68 Total: -1.64 kcal Total: -58.36 -3.11 -61.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843425876.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.650 kcal (2) G-P(sol) polarization free energy of solvation -58.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds