Wall clock time and date at job start Sat Apr 11 2020 06:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00238 * 2 1 4 4 H 1.48497 * 109.47208 * 90.00442 * 3 2 1 5 5 H 1.48502 * 109.47214 * 210.00356 * 3 2 1 6 6 H 1.48502 * 109.47129 * 329.99922 * 3 2 1 7 7 C 1.37880 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00547 * 185.91123 * 7 2 1 9 9 C 1.50705 * 119.99594 * 5.91339 * 7 2 1 10 10 C 1.52997 * 115.54954 * 278.03792 * 9 7 2 11 11 N 1.46500 * 109.47147 * 300.43158 * 10 9 7 12 12 C 1.34074 * 127.06219 * 85.85631 * 11 10 9 13 13 O 1.21548 * 121.01165 * 359.95293 * 12 11 10 14 14 C 1.46918 * 117.97937 * 179.97438 * 12 11 10 15 15 C 1.40547 * 130.03755 * 180.02562 * 14 12 11 16 16 C 1.37605 * 120.36157 * 179.97438 * 15 14 12 17 17 C 1.38371 * 120.92484 * 0.02562 * 16 15 14 18 18 C 1.38825 * 119.52912 * 0.02562 * 17 16 15 19 19 Cl 1.73602 * 120.14689 * 180.02562 * 18 17 16 20 20 C 1.36804 * 119.70287 * 359.97416 * 18 17 16 21 21 S 1.67168 * 127.05970 * 265.54063 * 11 10 9 22 22 O 1.42106 * 107.51314 * 292.05067 * 21 11 10 23 23 O 1.42098 * 107.51649 * 67.98728 * 21 11 10 24 24 C 1.53007 * 117.49626 * 132.33264 * 9 7 2 25 25 C 1.52999 * 117.49994 * 63.71237 * 9 7 2 26 26 H 0.97001 * 119.99479 * 354.98245 * 1 2 3 27 27 H 1.08998 * 109.47243 * 60.43004 * 10 9 7 28 28 H 1.09005 * 109.46968 * 180.43505 * 10 9 7 29 29 H 1.08003 * 119.81761 * 359.97438 * 15 14 12 30 30 H 1.07998 * 119.54209 * 180.02562 * 16 15 14 31 31 H 1.07997 * 120.23336 * 180.02562 * 17 16 15 32 32 H 1.09000 * 117.49436 * 359.97438 * 24 9 7 33 33 H 1.08997 * 117.49722 * 145.02075 * 24 9 7 34 34 H 1.08999 * 117.49608 * 214.97752 * 25 9 7 35 35 H 1.09006 * 117.49849 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0802 -1.1966 0.0969 9 6 1.2569 -2.4958 -0.1334 10 6 0.6409 -3.0387 1.1576 11 7 1.6979 -3.2607 2.1474 12 6 2.2070 -2.3613 3.0014 13 8 1.8022 -1.2153 3.0189 14 6 3.2694 -2.8028 3.9152 15 6 3.9721 -2.0854 4.8984 16 6 4.9421 -2.7057 5.6520 17 6 5.2461 -4.0418 5.4593 18 6 4.5631 -4.7663 4.4919 19 17 4.9310 -6.4437 4.2372 20 6 3.5981 -4.1528 3.7410 21 16 2.5119 -4.6894 2.4488 22 8 1.5814 -5.5996 3.0189 23 8 3.3137 -4.9731 1.3105 24 6 1.7854 -3.5129 -1.1468 25 6 0.4959 -2.7425 -1.4375 26 1 -0.4849 0.8369 0.0735 27 1 -0.0774 -2.3181 1.5486 28 1 0.1339 -3.9811 0.9499 29 1 3.7496 -1.0415 5.0635 30 1 5.4737 -2.1419 6.4043 31 1 6.0092 -4.5176 6.0574 32 1 2.6735 -3.2404 -1.7170 33 1 1.6943 -4.5692 -0.8939 34 1 -0.4435 -3.2919 -1.3758 35 1 0.5356 -1.9631 -2.1986 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849895430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:20 Heat of formation + Delta-G solvation = -25.866110 kcal Electronic energy + Delta-G solvation = -25967.742777 eV Core-core repulsion = 22086.069875 eV Total energy + Delta-G solvation = -3881.672902 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.032 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.66963 -38.80830 -37.20669 -36.96675 -36.64490 -35.82676 -34.61358 -32.21882 -31.86882 -31.16181 -27.27389 -25.41037 -24.04463 -23.46240 -21.52170 -21.04898 -19.81472 -19.12306 -18.06246 -17.57056 -16.77880 -16.42170 -15.89256 -15.65630 -15.09126 -15.00304 -14.66207 -14.63624 -14.48013 -14.04016 -13.62530 -13.17945 -13.05957 -12.46934 -12.14412 -12.10975 -11.99651 -11.98201 -11.74571 -11.62993 -11.40768 -10.96194 -10.92817 -10.88590 -10.48300 -10.18346 -10.16004 -9.91948 -9.88372 -9.26990 -9.15830 -8.85843 -8.36274 -8.16806 -5.99461 -4.03360 0.01300 0.06287 0.50787 1.53615 2.41996 2.50633 3.14888 3.27636 3.35233 3.39296 3.40101 3.42636 4.24919 4.43154 4.46992 4.69981 4.77640 4.80713 4.93795 5.19950 5.30906 5.39267 5.44505 5.62054 5.76612 5.96442 6.11113 6.18204 6.32907 6.50869 6.52978 6.79248 6.94594 7.07488 7.38126 7.47959 7.87075 7.93017 8.41368 8.93911 9.63419 11.10191 Molecular weight = 341.03amu Principal moments of inertia in cm(-1) A = 0.015230 B = 0.005309 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.978229 B = 5273.044198 C = 6416.898665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.087 3.913 3 Si 0.884 3.116 4 H -0.279 1.279 5 H -0.275 1.275 6 H -0.287 1.287 7 C -0.487 4.487 8 H 0.055 0.945 9 C 0.018 3.982 10 C 0.176 3.824 11 N -0.890 5.890 12 C 0.526 3.474 13 O -0.420 6.420 14 C -0.071 4.071 15 C -0.047 4.047 16 C -0.068 4.068 17 C -0.099 4.099 18 C 0.080 3.920 19 Cl -0.047 7.047 20 C -0.630 4.630 21 S 2.651 3.349 22 O -0.930 6.930 23 O -0.908 6.908 24 C -0.204 4.204 25 C -0.150 4.150 26 H 0.260 0.740 27 H 0.110 0.890 28 H 0.064 0.936 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.436 -8.447 12.225 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.117 4.117 3 Si 0.712 3.288 4 H -0.205 1.205 5 H -0.200 1.200 6 H -0.213 1.213 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.016 3.984 10 C 0.057 3.943 11 N -0.736 5.736 12 C 0.308 3.692 13 O -0.286 6.286 14 C -0.077 4.077 15 C -0.067 4.067 16 C -0.086 4.086 17 C -0.119 4.119 18 C 0.052 3.948 19 Cl -0.018 7.018 20 C -0.716 4.716 21 S 2.740 3.260 22 O -0.919 6.919 23 O -0.897 6.897 24 C -0.241 4.241 25 C -0.189 4.189 26 H 0.070 0.930 27 H 0.128 0.872 28 H 0.082 0.918 29 H 0.171 0.829 30 H 0.170 0.830 31 H 0.171 0.829 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.874 -8.632 11.664 16.510 hybrid contribution 0.837 1.375 0.494 1.684 sum 8.711 -7.257 12.158 16.625 Atomic orbital electron populations 1.69909 1.05836 1.26732 1.48882 1.24799 0.94646 0.98525 0.93712 0.86716 0.79995 0.83933 0.78192 1.20455 1.20027 1.21274 1.20151 0.92477 0.88197 1.51630 0.92680 1.19218 0.98754 0.94684 0.85731 1.21360 0.85680 0.99956 0.87350 1.55860 1.47835 1.27426 1.42507 1.17902 0.82674 0.87818 0.80815 1.90857 1.56139 1.16604 1.65004 1.20445 0.97074 0.92313 0.97843 1.21244 0.92729 1.01038 0.91648 1.21285 0.95454 0.93912 0.97967 1.21556 0.99349 0.94383 0.96594 1.19485 0.94137 0.86140 0.95066 1.98429 1.93535 1.14068 1.95768 1.30718 1.14352 1.05763 1.20726 1.03994 0.74776 0.72914 0.74359 1.93664 1.61011 1.59052 1.78218 1.93698 1.68253 1.81666 1.46076 1.23036 0.98219 0.95498 1.07335 1.22586 0.92873 1.01542 1.01890 0.93035 0.87236 0.91763 0.82947 0.83005 0.82892 0.89900 0.91489 0.91529 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.38 13.05 55.43 0.72 -23.65 16 2 C 0.09 2.38 5.41 -17.82 -0.10 2.28 16 3 Si 0.88 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.49 -13.14 7.31 -34.44 -0.25 -13.39 16 8 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 9 C 0.02 0.43 1.55 -155.66 -0.24 0.19 16 10 C 0.18 3.87 5.95 -4.04 -0.02 3.85 16 11 N -0.89 -18.28 2.99 -64.40 -0.19 -18.47 16 12 C 0.53 10.59 7.09 -13.06 -0.09 10.50 16 13 O -0.42 -9.76 16.61 5.32 0.09 -9.68 16 14 C -0.07 -1.14 6.08 -104.84 -0.64 -1.78 16 15 C -0.05 -0.56 10.03 -38.94 -0.39 -0.95 16 16 C -0.07 -0.58 9.97 -39.76 -0.40 -0.97 16 17 C -0.10 -0.90 9.89 -39.32 -0.39 -1.29 16 18 C 0.08 1.02 6.29 -39.88 -0.25 0.77 16 19 Cl -0.05 -0.57 28.92 -51.86 -1.50 -2.07 16 20 C -0.63 -9.87 6.31 -39.43 -0.25 -10.12 16 21 S 2.65 48.92 6.14 -107.50 -0.66 48.26 16 22 O -0.93 -17.60 18.09 -56.98 -1.03 -18.63 16 23 O -0.91 -18.20 18.08 -56.98 -1.03 -19.23 16 24 C -0.20 -4.50 9.94 -26.73 -0.27 -4.76 16 25 C -0.15 -3.40 9.62 -26.73 -0.26 -3.65 16 26 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 27 H 0.11 2.58 8.03 -51.93 -0.42 2.16 16 28 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 29 H 0.15 1.60 8.06 -52.48 -0.42 1.18 16 30 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 32 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 LS Contribution 339.23 15.07 5.11 5.11 Total: -1.00 -32.45 339.23 -10.40 -42.85 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -3.34 Total: -1.77 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -3.54 Total: -19.35 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.53 Total: -42.12 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -1.97 Total: -47.53 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 48.92 SS G_CDS: -0.66 Total: 48.26 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.45 -10.40 -42.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849895430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.985 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds