Wall clock time and date at job start Sat Apr 11 2020 06:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00238 * 2 1 4 4 H 1.48497 * 109.47208 * 90.00442 * 3 2 1 5 5 H 1.48502 * 109.47214 * 210.00356 * 3 2 1 6 6 H 1.48502 * 109.47129 * 329.99922 * 3 2 1 7 7 C 1.37880 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00547 * 185.91123 * 7 2 1 9 9 C 1.50705 * 119.99594 * 5.91339 * 7 2 1 10 10 C 1.52997 * 115.54954 * 278.03792 * 9 7 2 11 11 N 1.46500 * 109.47147 * 300.43158 * 10 9 7 12 12 C 1.34074 * 127.06219 * 85.85631 * 11 10 9 13 13 O 1.21548 * 121.01165 * 359.95293 * 12 11 10 14 14 C 1.46918 * 117.97937 * 179.97438 * 12 11 10 15 15 C 1.40547 * 130.03755 * 180.02562 * 14 12 11 16 16 C 1.37605 * 120.36157 * 179.97438 * 15 14 12 17 17 C 1.38371 * 120.92484 * 0.02562 * 16 15 14 18 18 C 1.38825 * 119.52912 * 0.02562 * 17 16 15 19 19 Cl 1.73602 * 120.14689 * 180.02562 * 18 17 16 20 20 C 1.36804 * 119.70287 * 359.97416 * 18 17 16 21 21 S 1.67168 * 127.05970 * 265.54063 * 11 10 9 22 22 O 1.42106 * 107.51314 * 292.05067 * 21 11 10 23 23 O 1.42098 * 107.51649 * 67.98728 * 21 11 10 24 24 C 1.53007 * 117.49626 * 132.33264 * 9 7 2 25 25 C 1.52999 * 117.49994 * 63.71237 * 9 7 2 26 26 H 0.97001 * 119.99479 * 354.98245 * 1 2 3 27 27 H 1.08998 * 109.47243 * 60.43004 * 10 9 7 28 28 H 1.09005 * 109.46968 * 180.43505 * 10 9 7 29 29 H 1.08003 * 119.81761 * 359.97438 * 15 14 12 30 30 H 1.07998 * 119.54209 * 180.02562 * 16 15 14 31 31 H 1.07997 * 120.23336 * 180.02562 * 17 16 15 32 32 H 1.09000 * 117.49436 * 359.97438 * 24 9 7 33 33 H 1.08997 * 117.49722 * 145.02075 * 24 9 7 34 34 H 1.08999 * 117.49608 * 214.97752 * 25 9 7 35 35 H 1.09006 * 117.49849 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0802 -1.1966 0.0969 9 6 1.2569 -2.4958 -0.1334 10 6 0.6409 -3.0387 1.1576 11 7 1.6979 -3.2607 2.1474 12 6 2.2070 -2.3613 3.0014 13 8 1.8022 -1.2153 3.0189 14 6 3.2694 -2.8028 3.9152 15 6 3.9721 -2.0854 4.8984 16 6 4.9421 -2.7057 5.6520 17 6 5.2461 -4.0418 5.4593 18 6 4.5631 -4.7663 4.4919 19 17 4.9310 -6.4437 4.2372 20 6 3.5981 -4.1528 3.7410 21 16 2.5119 -4.6894 2.4488 22 8 1.5814 -5.5996 3.0189 23 8 3.3137 -4.9731 1.3105 24 6 1.7854 -3.5129 -1.1468 25 6 0.4959 -2.7425 -1.4375 26 1 -0.4849 0.8369 0.0735 27 1 -0.0774 -2.3181 1.5486 28 1 0.1339 -3.9811 0.9499 29 1 3.7496 -1.0415 5.0635 30 1 5.4737 -2.1419 6.4043 31 1 6.0092 -4.5176 6.0574 32 1 2.6735 -3.2404 -1.7170 33 1 1.6943 -4.5692 -0.8939 34 1 -0.4435 -3.2919 -1.3758 35 1 0.5356 -1.9631 -2.1986 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849895430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:19 Heat of formation + Delta-G solvation = -47.975521 kcal Electronic energy + Delta-G solvation = -25968.701513 eV Core-core repulsion = 22086.069875 eV Total energy + Delta-G solvation = -3882.631638 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.032 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.96426 -40.02120 -38.69450 -38.48505 -37.85173 -37.31358 -36.19016 -33.97448 -33.31434 -32.11544 -28.82672 -27.44248 -25.20143 -24.52966 -23.03684 -22.77288 -21.35978 -20.75461 -19.31740 -18.86482 -18.36750 -17.91551 -17.36784 -16.91883 -16.61357 -16.48466 -16.14368 -16.00804 -15.87438 -15.54136 -15.10616 -14.71743 -14.08873 -13.89938 -13.69454 -13.62088 -13.50320 -13.32746 -13.11485 -12.92353 -12.90531 -12.81223 -12.58538 -12.40828 -12.10082 -12.01498 -11.95737 -11.47917 -10.99678 -10.81489 -10.80957 -10.34437 -10.23086 -10.05960 -8.08234 -6.15252 -1.33538 -1.05158 -0.42189 0.57893 1.04071 1.27945 1.37259 1.38399 1.44911 1.76253 2.06422 2.19912 2.44103 3.22168 3.22756 3.33646 3.42124 3.60281 3.85540 3.91276 3.98662 4.06420 4.20177 4.41688 4.50369 4.57510 4.70085 4.76964 4.85622 4.96566 5.00503 5.20834 5.29219 5.34573 5.56022 5.62953 5.78553 6.35673 6.39887 6.82734 7.52229 9.00558 Molecular weight = 341.03amu Principal moments of inertia in cm(-1) A = 0.015230 B = 0.005309 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.978229 B = 5273.044198 C = 6416.898665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.049 3.951 3 Si 0.928 3.072 4 H -0.281 1.281 5 H -0.272 1.272 6 H -0.280 1.280 7 C -0.492 4.492 8 H 0.035 0.965 9 C -0.010 4.010 10 C 0.179 3.821 11 N -0.903 5.903 12 C 0.521 3.479 13 O -0.470 6.470 14 C -0.106 4.106 15 C -0.042 4.042 16 C -0.041 4.041 17 C -0.074 4.074 18 C 0.067 3.933 19 Cl -0.045 7.045 20 C -0.636 4.636 21 S 2.654 3.346 22 O -0.944 6.944 23 O -0.933 6.933 24 C -0.189 4.189 25 C -0.146 4.146 26 H 0.259 0.741 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.165 0.835 30 H 0.210 0.790 31 H 0.202 0.798 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.972 -8.963 14.802 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.153 4.153 3 Si 0.755 3.245 4 H -0.208 1.208 5 H -0.197 1.197 6 H -0.205 1.205 7 C -0.530 4.530 8 H 0.053 0.947 9 C -0.011 4.011 10 C 0.058 3.942 11 N -0.748 5.748 12 C 0.306 3.694 13 O -0.339 6.339 14 C -0.111 4.111 15 C -0.062 4.062 16 C -0.058 4.058 17 C -0.093 4.093 18 C 0.039 3.961 19 Cl -0.015 7.015 20 C -0.726 4.726 21 S 2.747 3.253 22 O -0.934 6.934 23 O -0.923 6.923 24 C -0.227 4.227 25 C -0.184 4.184 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.182 0.818 30 H 0.227 0.773 31 H 0.219 0.781 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.390 -9.184 14.197 19.846 hybrid contribution 0.198 1.480 -0.155 1.502 sum 10.588 -7.703 14.041 19.199 Atomic orbital electron populations 1.69984 1.06570 1.27023 1.49919 1.25318 0.95335 1.00812 0.93804 0.86011 0.79236 0.81336 0.77889 1.20752 1.19733 1.20541 1.20225 0.91679 0.89854 1.51195 0.94661 1.19327 0.99987 0.94591 0.87216 1.21117 0.85858 1.00550 0.86671 1.55938 1.47762 1.28675 1.42381 1.18703 0.82856 0.87163 0.80664 1.90810 1.58099 1.18288 1.66748 1.20163 0.97988 0.93173 0.99789 1.21687 0.92465 1.01670 0.90347 1.21955 0.93160 0.93723 0.97009 1.22227 0.98329 0.94291 0.94444 1.19896 0.93941 0.86627 0.95638 1.98435 1.93345 1.13898 1.95852 1.30109 1.15833 1.05624 1.21073 1.03513 0.74822 0.72132 0.74819 1.93638 1.61969 1.59339 1.78430 1.93661 1.68498 1.81952 1.48157 1.23005 0.97662 0.96112 1.05875 1.22551 0.94102 1.01298 1.00473 0.93224 0.89772 0.89090 0.81787 0.77275 0.78074 0.90584 0.89564 0.89282 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.39 13.05 21.45 0.28 -51.11 16 2 C 0.05 2.74 5.41 84.66 0.46 3.20 16 3 Si 0.93 45.30 29.54 68.60 2.03 47.33 16 4 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 5 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 7 C -0.49 -27.48 7.31 25.60 0.19 -27.29 16 8 H 0.04 2.05 7.82 -2.91 -0.02 2.03 16 9 C -0.01 -0.48 1.55 -52.93 -0.08 -0.57 16 10 C 0.18 8.16 5.95 86.38 0.51 8.67 16 11 N -0.90 -38.50 2.99 -476.34 -1.43 -39.93 16 12 C 0.52 21.78 7.09 86.63 0.61 22.39 16 13 O -0.47 -22.94 16.61 -3.87 -0.06 -23.00 16 14 C -0.11 -3.33 6.08 -20.01 -0.12 -3.45 16 15 C -0.04 -0.88 10.03 22.68 0.23 -0.65 16 16 C -0.04 -0.45 9.97 22.15 0.22 -0.23 16 17 C -0.07 -0.92 9.89 22.44 0.22 -0.70 16 18 C 0.07 1.52 6.29 22.07 0.14 1.65 16 19 Cl -0.04 -0.98 28.92 -2.72 -0.08 -1.06 16 20 C -0.64 -19.27 6.31 22.37 0.14 -19.13 16 21 S 2.65 99.45 6.14 -56.49 -0.35 99.10 16 22 O -0.94 -36.23 18.09 -128.19 -2.32 -38.55 16 23 O -0.93 -38.07 18.08 -128.19 -2.32 -40.39 16 24 C -0.19 -8.45 9.94 30.60 0.30 -8.15 16 25 C -0.15 -6.68 9.62 30.59 0.29 -6.39 16 26 H 0.26 14.32 8.32 -92.71 -0.77 13.54 16 27 H 0.08 4.21 8.03 -2.39 -0.02 4.19 16 28 H 0.09 3.51 8.11 -2.38 -0.02 3.49 16 29 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 30 H 0.21 0.05 8.06 -2.91 -0.02 0.02 16 31 H 0.20 0.66 8.06 -2.91 -0.02 0.64 16 32 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 33 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 34 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 35 H 0.07 3.34 8.14 -2.38 -0.02 3.32 16 Total: -1.00 -75.44 339.23 0.01 -75.43 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: 1.14 Total: 2.82 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 3.12 Total: -30.65 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -1.15 Total: -91.04 kcal Atomic # 8 Polarization: -97.24 SS G_CDS: -4.70 Total: -101.94 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: 99.45 SS G_CDS: -0.35 Total: 99.10 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -75.44 0.01 -75.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849895430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.453 kcal (2) G-P(sol) polarization free energy of solvation -75.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds