Wall clock time and date at job start Sat Apr 11 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99942 * 2 1 4 4 N 1.46500 * 109.46949 * 234.99957 * 3 2 1 5 5 C 1.46503 * 120.00173 * 275.00151 * 4 3 2 6 6 C 1.50702 * 109.47032 * 84.99679 * 5 4 3 7 7 H 1.08001 * 120.00320 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99540 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99632 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00267 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47144 * 89.99736 * 10 8 6 12 12 H 1.48501 * 109.46970 * 210.00164 * 10 8 6 13 13 H 1.48500 * 109.46797 * 329.99615 * 10 8 6 14 14 S 1.65597 * 120.00032 * 94.99796 * 4 3 2 15 15 O 1.42105 * 104.27912 * 206.07448 * 14 4 3 16 16 O 1.42100 * 104.27968 * 333.92860 * 14 4 3 17 17 C 1.81398 * 104.44917 * 90.00344 * 14 4 3 18 18 C 1.53001 * 109.47316 * 180.02562 * 17 14 4 19 19 C 1.53005 * 115.54837 * 34.41399 * 18 17 14 20 20 C 1.52992 * 117.50078 * 248.74698 * 18 17 14 21 21 C 1.52997 * 117.50235 * 180.08430 * 18 17 14 22 22 Cl 1.80295 * 117.50049 * 214.98098 * 21 18 17 23 23 Cl 1.80302 * 117.49592 * 359.97438 * 21 18 17 24 24 H 1.08001 * 119.99708 * 359.97438 * 1 2 3 25 25 H 1.07991 * 120.00013 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.00239 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47318 * 354.99343 * 3 2 1 28 28 H 1.09000 * 109.47161 * 114.99974 * 3 2 1 29 29 H 1.08999 * 109.47244 * 204.99749 * 5 4 3 30 30 H 1.08998 * 109.46581 * 325.00257 * 5 4 3 31 31 H 0.96996 * 120.00240 * 180.02562 * 9 8 6 32 32 H 1.09007 * 109.46926 * 299.99542 * 17 14 4 33 33 H 1.08995 * 109.47292 * 59.99785 * 17 14 4 34 34 H 1.09003 * 109.47169 * 85.58647 * 19 18 17 35 35 H 1.08997 * 109.47331 * 205.58309 * 19 18 17 36 36 H 1.09000 * 109.47529 * 325.58772 * 19 18 17 37 37 H 1.09000 * 117.50259 * 359.97438 * 20 18 17 38 38 H 1.08998 * 117.50339 * 145.01749 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 -1.1314 5 6 4.3217 0.7268 -1.0024 6 6 4.2322 -0.7485 -1.2972 7 1 3.2814 -1.1909 -1.5552 8 6 5.3644 -1.5332 -1.2374 9 7 5.2862 -2.8207 -1.4941 10 14 7.0088 -0.7681 -0.7904 11 1 7.1956 -0.8212 0.6819 12 1 8.1022 -1.5211 -1.4557 13 1 7.0357 0.6463 -1.2421 14 16 2.5442 2.0461 -2.5562 15 8 3.3281 1.3870 -3.5413 16 8 1.1265 1.9509 -2.5640 17 6 3.0652 3.7747 -2.3802 18 6 2.7000 4.5492 -3.6481 19 6 1.4053 4.1137 -4.3374 20 6 3.8481 5.0277 -4.5390 21 6 3.0611 6.0351 -3.6971 22 17 1.9287 7.1390 -4.5630 23 17 3.8838 6.7398 -2.2557 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9352 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1317 -0.0897 28 1 2.6213 1.4027 0.9314 29 1 5.0057 1.1975 -1.7086 30 1 4.6903 0.8727 0.0129 31 1 6.0825 -3.3730 -1.4517 32 1 2.5595 4.2212 -1.5239 33 1 4.1436 3.8154 -2.2271 34 1 0.5599 4.6295 -3.8819 35 1 1.4557 4.3644 -5.3970 36 1 1.2778 3.0372 -4.2244 37 1 4.8637 4.7913 -4.2216 38 1 3.6810 5.0328 -5.6161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867296989.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:38 Heat of formation + Delta-G solvation = -45.342267 kcal Electronic energy + Delta-G solvation = -24144.874496 eV Core-core repulsion = 20395.757290 eV Total energy + Delta-G solvation = -3749.117206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.91260 -38.18296 -37.96569 -37.11439 -37.04862 -36.78963 -34.82777 -33.66922 -30.81458 -29.89719 -29.10244 -26.46573 -23.84681 -23.49172 -21.03239 -20.86391 -19.64268 -18.92857 -18.68758 -17.80494 -17.27886 -16.71200 -16.35883 -16.28882 -15.74356 -15.44248 -14.95482 -14.69950 -14.45558 -14.41750 -14.25589 -14.04142 -13.59482 -13.48285 -13.15078 -13.02905 -13.00944 -12.97212 -12.66741 -12.59387 -12.48017 -12.31728 -12.22283 -12.11157 -12.03577 -11.87977 -11.82736 -11.44697 -11.25866 -10.76126 -10.70525 -10.21348 -9.75118 -8.21335 -6.25244 -0.77822 0.06354 1.06502 1.36889 1.40696 1.44452 1.52087 1.90534 1.97670 2.40322 2.87122 2.99376 3.05522 3.12530 3.26440 3.31698 3.60082 3.96457 4.08933 4.23222 4.36817 4.39751 4.47656 4.56671 4.61967 4.71517 4.75405 4.81787 4.88468 5.02974 5.15083 5.33308 5.54990 5.72271 5.87243 6.04471 6.38694 6.78912 7.36296 8.96219 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.014023 B = 0.004147 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.221081 B = 6750.606974 C = 7669.329918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.183 4.183 3 C 0.154 3.846 4 N -0.987 5.987 5 C 0.227 3.773 6 C -0.528 4.528 7 H 0.031 0.969 8 C 0.004 3.996 9 N -0.953 5.953 10 Si 0.939 3.061 11 H -0.258 1.258 12 H -0.289 1.289 13 H -0.233 1.233 14 S 2.608 3.392 15 O -0.982 6.982 16 O -0.973 6.973 17 C -0.589 4.589 18 C -0.097 4.097 19 C -0.159 4.159 20 C -0.128 4.128 21 C 0.020 3.980 22 Cl -0.086 7.086 23 Cl -0.089 7.089 24 H 0.117 0.883 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.264 0.736 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.139 0.861 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 22.743 -1.107 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.203 4.203 3 C 0.029 3.971 4 N -0.823 5.823 5 C 0.102 3.898 6 C -0.567 4.567 7 H 0.050 0.950 8 C -0.193 4.193 9 N -0.594 5.594 10 Si 0.761 3.239 11 H -0.182 1.182 12 H -0.215 1.215 13 H -0.156 1.156 14 S 2.704 3.296 15 O -0.972 6.972 16 O -0.963 6.963 17 C -0.719 4.719 18 C -0.100 4.100 19 C -0.216 4.216 20 C -0.166 4.166 21 C -0.032 4.032 22 Cl -0.059 7.059 23 Cl -0.062 7.062 24 H 0.135 0.865 25 H 0.114 0.886 26 H 0.102 0.898 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.186 0.814 33 H 0.175 0.825 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.072 0.928 37 H 0.157 0.843 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.680 22.313 -1.756 22.866 hybrid contribution 0.899 -0.209 0.483 1.042 sum -3.781 22.104 -1.273 22.461 Atomic orbital electron populations 1.23928 0.95264 1.02526 0.99960 1.23478 0.96706 0.99823 1.00323 1.20515 0.91243 0.95190 0.90139 1.57234 1.24388 1.70100 1.30560 1.19345 0.80092 0.91826 0.98527 1.21711 0.95141 0.93781 1.46098 0.95032 1.25918 1.03438 0.95056 0.94905 1.70084 1.30724 1.07018 1.51602 0.85849 0.78175 0.80423 0.79430 1.18232 1.21522 1.15631 1.05048 0.73942 0.77526 0.73121 1.93590 1.72075 1.72310 1.59272 1.93531 1.29769 1.86990 1.86014 1.30311 1.14661 1.21787 1.05175 1.21791 0.99575 0.91978 0.96645 1.22052 0.94742 1.01740 1.03022 1.24592 0.98113 0.93252 1.00595 1.26902 0.98353 0.85830 0.92134 1.98750 1.63811 1.66855 1.76499 1.98754 1.79032 1.86075 1.42364 0.86536 0.88634 0.89831 0.87757 0.87851 0.94003 0.92514 0.92682 0.81406 0.82455 0.88437 0.87962 0.92781 0.84262 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.60 14.32 67.78 0.97 -4.63 16 2 C -0.18 -6.72 9.32 25.65 0.24 -6.48 16 3 C 0.15 4.72 5.72 85.63 0.49 5.21 16 4 N -0.99 -35.93 2.72 -523.89 -1.42 -37.36 16 5 C 0.23 9.73 4.10 85.63 0.35 10.08 16 6 C -0.53 -29.69 9.21 25.60 0.24 -29.45 16 7 H 0.03 2.03 7.07 -2.91 -0.02 2.01 16 8 C 0.00 0.21 5.47 84.66 0.46 0.67 16 9 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 10 Si 0.94 41.50 27.47 68.60 1.88 43.39 16 11 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.23 -9.03 6.54 99.48 0.65 -8.38 16 14 S 2.61 88.84 4.11 -56.49 -0.23 88.61 16 15 O -0.98 -43.20 16.99 -127.65 -2.17 -45.37 16 16 O -0.97 -35.10 14.83 -127.65 -1.89 -36.99 16 17 C -0.59 -12.67 5.39 71.98 0.39 -12.28 16 18 C -0.10 -1.93 2.47 -52.18 -0.13 -2.06 16 19 C -0.16 -3.32 8.39 71.98 0.60 -2.71 16 20 C -0.13 -2.05 9.51 30.61 0.29 -1.76 16 21 C 0.02 0.35 3.61 30.62 0.11 0.46 16 22 Cl -0.09 -1.45 28.32 -2.72 -0.08 -1.53 16 23 Cl -0.09 -1.58 28.32 -2.72 -0.08 -1.65 16 24 H 0.12 3.05 7.84 -2.91 -0.02 3.03 16 25 H 0.10 2.85 8.06 -2.91 -0.02 2.83 16 26 H 0.08 3.77 6.84 -2.91 -0.02 3.75 16 27 H 0.10 2.46 7.26 -2.39 -0.02 2.44 16 28 H 0.10 2.68 8.00 -2.39 -0.02 2.66 16 29 H 0.04 1.74 6.67 -2.39 -0.02 1.72 16 30 H 0.06 2.16 7.43 -2.39 -0.02 2.14 16 31 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 32 H 0.17 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.16 2.89 7.90 -2.39 -0.02 2.87 16 34 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.10 1.68 7.90 -2.39 -0.02 1.66 16 36 H 0.05 1.43 4.58 -5.38 -0.02 1.40 16 37 H 0.14 1.94 8.05 -2.39 -0.02 1.92 16 38 H 0.15 1.80 8.05 -2.39 -0.02 1.78 16 Total: -1.00 -75.95 355.22 1.32 -74.63 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 1.00 Total: 18.92 kcal Atomic # 6 Polarization: -46.96 SS G_CDS: 4.01 Total: -42.95 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -1.12 Total: -97.04 kcal Atomic # 8 Polarization: -78.30 SS G_CDS: -4.06 Total: -82.37 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.88 Total: 43.39 kcal Atomic # 16 Polarization: 88.84 SS G_CDS: -0.23 Total: 88.61 kcal Atomic # 17 Polarization: -3.03 SS G_CDS: -0.15 Total: -3.18 kcal Total: -75.95 1.32 -74.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867296989.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.284 kcal (2) G-P(sol) polarization free energy of solvation -75.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds