Wall clock time and date at job start Sat Apr 11 2020 06:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76203 * 100.00057 * 2 1 4 4 N 1.30303 * 126.16747 * 0.02562 * 3 2 1 5 5 N 1.26105 * 117.60275 * 180.02562 * 4 3 2 6 6 C 1.29330 * 117.97257 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.05574 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.47128 * 90.02633 * 7 6 5 9 9 C 1.34775 * 119.99552 * 179.97438 * 8 7 6 10 10 O 1.21761 * 120.00367 * 359.97438 * 9 8 7 11 11 C 1.46244 * 119.99665 * 179.97438 * 9 8 7 12 12 S 1.75662 * 125.22687 * 0.08480 * 11 9 8 13 13 C 1.75475 * 92.08977 * 180.21629 * 12 11 9 14 14 C 1.32762 * 111.36200 * 359.83520 * 13 12 11 15 15 C 1.39544 * 125.22461 * 180.02562 * 11 9 8 16 16 C 1.40530 * 123.72036 * 359.97438 * 15 11 9 17 17 H 1.08002 * 120.00122 * 335.52835 * 16 15 11 18 18 C 1.40309 * 120.00320 * 155.51826 * 16 15 11 19 19 N 1.30640 * 119.99778 * 339.34545 * 18 16 15 20 20 Si 1.86801 * 119.99910 * 159.34138 * 18 16 15 21 21 H 1.48501 * 109.46895 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47086 * 300.00081 * 20 18 16 23 23 H 1.48491 * 109.47072 * 60.00435 * 20 18 16 24 24 S 1.76475 * 107.87962 * 0.26298 * 6 5 4 25 25 H 1.08992 * 109.47159 * 300.00116 * 1 2 3 26 26 H 1.09005 * 109.46483 * 60.00373 * 1 2 3 27 27 H 1.08999 * 109.47242 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47309 * 330.01969 * 7 6 5 29 29 H 1.09005 * 109.46596 * 210.02098 * 7 6 5 30 30 H 0.96997 * 120.00180 * 359.97438 * 8 7 6 31 31 H 1.08005 * 124.31556 * 179.86582 * 13 12 11 32 32 H 1.07997 * 122.78269 * 180.02562 * 14 13 12 33 33 H 0.96999 * 120.00259 * 353.99991 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.2136 2.6752 0.0005 5 7 1.6151 3.8707 -0.0001 6 6 2.8910 4.0821 -0.0006 7 6 3.5669 5.4290 -0.0008 8 7 3.7871 5.8651 1.3804 9 6 4.3821 7.0491 1.6264 10 8 4.7370 7.7561 0.7008 11 6 4.6013 7.4847 3.0051 12 16 4.1479 6.5767 4.4388 13 6 4.7670 7.8260 5.5042 14 6 5.2761 8.8404 4.8154 15 6 5.2040 8.6850 3.3837 16 6 5.6832 9.6395 2.4704 17 1 5.9654 9.3380 1.4725 18 6 5.7949 10.9842 2.8549 19 7 5.1059 11.4327 3.8702 20 14 6.9290 12.1332 1.9151 21 1 6.8680 13.4898 2.5161 22 1 8.3215 11.6225 1.9872 23 1 6.4994 12.2006 0.4953 24 16 3.7000 2.5137 -0.0080 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 2.9341 6.1530 -0.5140 29 1 4.5250 5.3545 -0.5154 30 1 3.5047 5.3017 2.1177 31 1 4.7380 7.7759 6.5827 32 1 5.7084 9.7098 5.2882 33 1 4.4530 10.8612 4.3036 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867665584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:44 Heat of formation + Delta-G solvation = 43.241428 kcal Electronic energy + Delta-G solvation = -21074.688111 eV Core-core repulsion = 17673.101265 eV Total energy + Delta-G solvation = -3401.586846 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 341.007 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.16612 -38.49955 -36.54839 -34.47378 -33.08088 -31.80567 -29.57055 -29.13027 -28.16719 -26.05213 -24.64290 -22.51348 -21.06745 -20.26860 -19.46190 -19.09818 -18.19723 -17.26793 -16.48606 -15.97036 -15.41398 -14.90097 -14.71199 -14.39524 -14.19159 -13.94438 -13.88139 -13.69162 -13.43667 -13.14171 -12.79511 -12.44150 -12.26662 -11.94257 -11.50222 -11.41198 -11.11671 -10.93142 -10.74933 -10.71895 -10.47215 -10.37856 -10.14406 -9.92559 -9.79021 -9.20929 -8.66175 -8.51589 -8.16626 -7.83612 -7.41010 -7.37653 -4.65615 -0.03942 0.25881 0.88135 1.15465 1.63740 1.97078 2.24238 2.89138 3.02765 3.08402 3.29766 3.49212 3.61858 3.80443 3.87432 4.11845 4.29922 4.58364 4.69988 4.75005 4.95112 5.04123 5.36802 5.58366 5.67370 5.79366 6.31270 6.68051 6.91856 6.97125 7.16404 7.21361 7.69534 7.86707 8.25576 8.28151 8.39671 8.64655 9.39219 9.71176 Molecular weight = 341.01amu Principal moments of inertia in cm(-1) A = 0.021981 B = 0.002548 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.494685 B =10986.493308 C =11780.817298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S 0.024 5.976 3 C -0.016 4.016 4 N -0.266 5.266 5 N -0.236 5.236 6 C 0.026 3.974 7 C 0.211 3.789 8 N -0.747 5.747 9 C 0.604 3.396 10 O -0.560 6.560 11 C -0.437 4.437 12 S -0.038 6.038 13 C -0.183 4.183 14 C -0.143 4.143 15 C 0.113 3.887 16 C -0.420 4.420 17 H 0.111 0.889 18 C 0.028 3.972 19 N -0.774 5.774 20 Si 1.074 2.926 21 H -0.272 1.272 22 H -0.270 1.270 23 H -0.268 1.268 24 S 0.132 5.868 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.392 0.608 31 H 0.142 0.858 32 H 0.132 0.868 33 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 -17.238 -4.524 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.252 5.748 3 C -0.402 4.402 4 N -0.108 5.108 5 N -0.072 5.072 6 C -0.258 4.258 7 C 0.082 3.918 8 N -0.403 5.403 9 C 0.402 3.598 10 O -0.442 6.442 11 C -0.556 4.556 12 S 0.217 5.783 13 C -0.318 4.318 14 C -0.176 4.176 15 C 0.102 3.898 16 C -0.450 4.450 17 H 0.128 0.872 18 C -0.196 4.196 19 N -0.397 5.397 20 Si 0.896 3.104 21 H -0.196 1.196 22 H -0.196 1.196 23 H -0.193 1.193 24 S 0.371 5.629 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.130 0.870 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.226 0.774 31 H 0.159 0.841 32 H 0.149 0.851 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.019 -17.413 -4.945 18.352 hybrid contribution -1.116 0.344 0.481 1.263 sum -4.136 -17.070 -4.465 18.122 Atomic orbital electron populations 1.23672 0.93338 1.07049 1.07753 1.85709 1.08376 0.90466 1.90251 1.31483 0.95419 1.06242 1.07105 1.71781 1.28474 0.93486 1.17058 1.70837 1.11885 1.11490 1.13038 1.30114 0.91881 1.00133 1.03671 1.19498 0.99233 0.85803 0.87243 1.45842 1.66370 1.22806 1.05321 1.16756 0.76285 0.78827 0.87958 1.90676 1.54102 1.54133 1.45328 1.22285 1.34514 1.07168 0.91629 1.82818 1.70102 1.25693 0.99645 1.24945 1.06529 0.98917 1.01384 1.21586 1.02551 0.98991 0.94473 1.17880 0.89289 0.92127 0.90458 1.21009 1.29495 0.92878 1.01647 0.87155 1.27589 0.97870 0.98799 0.95373 1.70439 1.14197 1.40812 1.14205 0.83499 0.75571 0.75147 0.76228 1.19615 1.19557 1.19339 1.85899 1.07702 1.00491 1.68768 0.88606 0.88680 0.87007 0.88277 0.89273 0.77448 0.84063 0.85059 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.03 101.05 1.01 0.06 16 2 S 0.02 0.21 22.96 -107.50 -2.47 -2.26 16 3 C -0.02 -0.19 7.85 52.11 0.41 0.22 16 4 N -0.27 -3.85 10.96 31.32 0.34 -3.50 16 5 N -0.24 -3.76 11.55 33.57 0.39 -3.37 16 6 C 0.03 0.38 7.16 -13.33 -0.10 0.28 16 7 C 0.21 3.39 6.29 -5.19 -0.03 3.35 16 8 N -0.75 -14.36 5.54 -62.93 -0.35 -14.71 16 9 C 0.60 14.43 7.76 -13.05 -0.10 14.33 16 10 O -0.56 -14.81 14.46 5.13 0.07 -14.73 16 11 C -0.44 -10.81 6.51 -35.88 -0.23 -11.05 16 12 S -0.04 -0.80 22.25 -107.50 -2.39 -3.19 16 13 C -0.18 -3.80 11.07 28.86 0.32 -3.48 16 14 C -0.14 -3.31 8.19 -39.12 -0.32 -3.63 16 15 C 0.11 2.92 5.41 -106.21 -0.57 2.35 16 16 C -0.42 -11.08 8.44 -37.94 -0.32 -11.40 16 17 H 0.11 3.06 6.14 -52.49 -0.32 2.74 16 18 C 0.03 0.68 5.23 -17.28 -0.09 0.59 16 19 N -0.77 -19.19 12.48 55.57 0.69 -18.50 16 20 Si 1.07 20.84 29.99 -169.99 -5.10 15.74 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.27 -5.01 7.11 56.52 0.40 -4.60 16 23 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 24 S 0.13 1.57 23.53 -107.50 -2.53 -0.96 16 25 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 26 H 0.09 0.65 8.14 -51.91 -0.42 0.23 16 27 H 0.11 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.39 7.18 7.54 -40.82 -0.31 6.87 16 31 H 0.14 2.44 8.06 -52.48 -0.42 2.01 16 32 H 0.13 2.99 6.77 -52.49 -0.36 2.63 16 33 H 0.30 7.60 6.22 -40.82 -0.25 7.35 16 LS Contribution 334.42 15.07 5.04 5.04 Total: -1.00 -29.76 334.42 -8.90 -38.66 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -2.57 Total: 10.17 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -0.03 Total: -8.37 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 1.08 Total: -40.09 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.07 Total: -14.73 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.10 Total: 15.74 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -7.39 Total: -6.42 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.76 -8.90 -38.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867665584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.899 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds