Wall clock time and date at job start Sat Apr 11 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76203 * 100.00057 * 2 1 4 4 N 1.30303 * 126.16747 * 0.02562 * 3 2 1 5 5 N 1.26105 * 117.60275 * 180.02562 * 4 3 2 6 6 C 1.29330 * 117.97257 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.05574 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.47128 * 90.02633 * 7 6 5 9 9 C 1.34775 * 119.99552 * 179.97438 * 8 7 6 10 10 O 1.21761 * 120.00367 * 359.97438 * 9 8 7 11 11 C 1.46244 * 119.99665 * 179.97438 * 9 8 7 12 12 S 1.75662 * 125.22687 * 0.08480 * 11 9 8 13 13 C 1.75475 * 92.08977 * 180.21629 * 12 11 9 14 14 C 1.32762 * 111.36200 * 359.83520 * 13 12 11 15 15 C 1.39544 * 125.22461 * 180.02562 * 11 9 8 16 16 C 1.40530 * 123.72036 * 359.97438 * 15 11 9 17 17 H 1.08002 * 120.00122 * 335.52835 * 16 15 11 18 18 C 1.40309 * 120.00320 * 155.51826 * 16 15 11 19 19 N 1.30640 * 119.99778 * 339.34545 * 18 16 15 20 20 Si 1.86801 * 119.99910 * 159.34138 * 18 16 15 21 21 H 1.48501 * 109.46895 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47086 * 300.00081 * 20 18 16 23 23 H 1.48491 * 109.47072 * 60.00435 * 20 18 16 24 24 S 1.76475 * 107.87962 * 0.26298 * 6 5 4 25 25 H 1.08992 * 109.47159 * 300.00116 * 1 2 3 26 26 H 1.09005 * 109.46483 * 60.00373 * 1 2 3 27 27 H 1.08999 * 109.47242 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47309 * 330.01969 * 7 6 5 29 29 H 1.09005 * 109.46596 * 210.02098 * 7 6 5 30 30 H 0.96997 * 120.00180 * 359.97438 * 8 7 6 31 31 H 1.08005 * 124.31556 * 179.86582 * 13 12 11 32 32 H 1.07997 * 122.78269 * 180.02562 * 14 13 12 33 33 H 0.96999 * 120.00259 * 353.99991 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.2136 2.6752 0.0005 5 7 1.6151 3.8707 -0.0001 6 6 2.8910 4.0821 -0.0006 7 6 3.5669 5.4290 -0.0008 8 7 3.7871 5.8651 1.3804 9 6 4.3821 7.0491 1.6264 10 8 4.7370 7.7561 0.7008 11 6 4.6013 7.4847 3.0051 12 16 4.1479 6.5767 4.4388 13 6 4.7670 7.8260 5.5042 14 6 5.2761 8.8404 4.8154 15 6 5.2040 8.6850 3.3837 16 6 5.6832 9.6395 2.4704 17 1 5.9654 9.3380 1.4725 18 6 5.7949 10.9842 2.8549 19 7 5.1059 11.4327 3.8702 20 14 6.9290 12.1332 1.9151 21 1 6.8680 13.4898 2.5161 22 1 8.3215 11.6225 1.9872 23 1 6.4994 12.2006 0.4953 24 16 3.7000 2.5137 -0.0080 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 2.9341 6.1530 -0.5140 29 1 4.5250 5.3545 -0.5154 30 1 3.5047 5.3017 2.1177 31 1 4.7380 7.7759 6.5827 32 1 5.7084 9.7098 5.2882 33 1 4.4530 10.8612 4.3036 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867665584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:43 Heat of formation + Delta-G solvation = 23.654479 kcal Electronic energy + Delta-G solvation = -21075.537465 eV Core-core repulsion = 17673.101265 eV Total energy + Delta-G solvation = -3402.436200 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 341.007 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.23113 -40.29955 -38.33624 -36.05773 -34.89797 -33.06227 -31.05482 -30.08705 -29.38042 -27.65904 -26.02353 -24.25587 -22.19780 -21.97452 -20.91846 -20.52187 -19.74851 -18.33733 -18.24497 -17.23464 -16.68647 -16.40724 -16.03532 -15.95213 -15.65424 -15.46325 -14.99041 -14.78762 -14.55551 -14.44048 -14.11122 -14.03308 -13.71763 -13.47123 -13.22380 -12.76089 -12.54132 -12.20671 -12.03578 -11.93397 -11.87499 -11.73591 -11.53382 -11.39010 -11.02245 -10.91422 -10.51161 -10.18445 -9.69359 -9.25497 -9.16501 -8.93318 -6.56874 -1.06553 -0.64916 -0.09692 0.16118 0.21654 1.00668 1.14350 1.18421 1.39347 1.48663 1.64595 1.80804 1.88436 2.26121 2.39450 2.45032 2.82042 3.13530 3.59156 3.80884 4.17538 4.22054 4.27333 4.32523 4.33134 4.59469 4.87857 4.89473 5.15805 5.29987 5.34455 5.40641 5.83256 5.90199 6.45347 6.54663 6.77950 7.22203 7.55355 7.81347 Molecular weight = 341.01amu Principal moments of inertia in cm(-1) A = 0.021981 B = 0.002548 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.494685 B =10986.493308 C =11780.817298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S 0.056 5.944 3 C -0.018 4.018 4 N -0.290 5.290 5 N -0.258 5.258 6 C 0.004 3.996 7 C 0.214 3.786 8 N -0.734 5.734 9 C 0.597 3.403 10 O -0.594 6.594 11 C -0.471 4.471 12 S 0.017 5.983 13 C -0.165 4.165 14 C -0.171 4.171 15 C 0.091 3.909 16 C -0.459 4.459 17 H 0.086 0.914 18 C 0.002 3.998 19 N -0.785 5.785 20 Si 1.119 2.881 21 H -0.260 1.260 22 H -0.257 1.257 23 H -0.267 1.267 24 S 0.174 5.826 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.145 0.855 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.398 0.602 31 H 0.184 0.816 32 H 0.130 0.870 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 -19.690 -3.857 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.285 5.715 3 C -0.404 4.404 4 N -0.133 5.133 5 N -0.095 5.095 6 C -0.280 4.280 7 C 0.086 3.914 8 N -0.388 5.388 9 C 0.395 3.605 10 O -0.479 6.479 11 C -0.589 4.589 12 S 0.273 5.727 13 C -0.300 4.300 14 C -0.204 4.204 15 C 0.080 3.920 16 C -0.490 4.490 17 H 0.104 0.896 18 C -0.218 4.218 19 N -0.408 5.408 20 Si 0.935 3.065 21 H -0.184 1.184 22 H -0.181 1.181 23 H -0.192 1.192 24 S 0.414 5.586 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.163 0.837 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.232 0.768 31 H 0.201 0.799 32 H 0.148 0.852 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.264 -19.944 -4.263 20.654 hybrid contribution -1.195 0.710 0.280 1.418 sum -4.459 -19.234 -3.983 20.142 Atomic orbital electron populations 1.23830 0.91632 1.09050 1.07377 1.85700 1.10150 0.87125 1.88559 1.32129 0.95424 1.07901 1.04927 1.71763 1.28984 0.93349 1.19193 1.70789 1.12773 1.12810 1.13152 1.29655 0.92115 1.00543 1.05716 1.19465 0.99826 0.86848 0.85215 1.45602 1.64773 1.21344 1.07087 1.16889 0.76344 0.79711 0.87603 1.90646 1.55500 1.55476 1.46282 1.22820 1.34226 1.08023 0.93853 1.82495 1.68859 1.24282 0.97056 1.25467 1.03641 0.97454 1.03434 1.21479 1.05128 1.00369 0.93408 1.18336 0.89041 0.92578 0.92054 1.21003 1.32456 0.94420 1.01078 0.89637 1.28784 0.98235 0.99397 0.95420 1.70529 1.14721 1.40407 1.15124 0.82976 0.74565 0.73935 0.75049 1.18361 1.18074 1.19232 1.85690 1.06719 0.98122 1.68062 0.89114 0.88913 0.83702 0.89332 0.88196 0.76786 0.79902 0.85205 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.03 113.37 1.14 -0.38 16 2 S 0.06 0.81 22.96 -56.49 -1.30 -0.49 16 3 C -0.02 -0.41 7.85 130.47 1.02 0.61 16 4 N -0.29 -8.12 10.96 -54.83 -0.60 -8.72 16 5 N -0.26 -8.17 11.55 -47.71 -0.55 -8.72 16 6 C 0.00 0.12 7.16 88.48 0.63 0.75 16 7 C 0.21 6.99 6.29 85.63 0.54 7.53 16 8 N -0.73 -28.46 5.54 -471.20 -2.61 -31.07 16 9 C 0.60 29.31 7.76 86.32 0.67 29.98 16 10 O -0.59 -32.80 14.46 -4.54 -0.07 -32.87 16 11 C -0.47 -23.60 6.51 24.67 0.16 -23.44 16 12 S 0.02 0.67 22.25 -56.49 -1.26 -0.59 16 13 C -0.17 -6.53 11.07 66.64 0.74 -5.79 16 14 C -0.17 -7.93 8.19 22.61 0.19 -7.74 16 15 C 0.09 4.82 5.41 -20.89 -0.11 4.71 16 16 C -0.46 -25.30 8.44 23.33 0.20 -25.11 16 17 H 0.09 5.03 6.14 -2.91 -0.02 5.02 16 18 C 0.00 0.08 5.23 85.37 0.45 0.52 16 19 N -0.79 -39.85 12.48 21.89 0.27 -39.58 16 20 Si 1.12 42.70 29.99 68.60 2.06 44.76 16 21 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 22 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 23 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 24 S 0.17 3.88 23.53 -56.49 -1.33 2.55 16 25 H 0.09 1.10 8.14 -2.40 -0.02 1.08 16 26 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.14 0.53 8.14 -2.40 -0.02 0.51 16 28 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.10 3.02 8.14 -2.38 -0.02 3.01 16 30 H 0.40 14.39 7.54 -92.71 -0.70 13.69 16 31 H 0.18 5.60 8.06 -2.91 -0.02 5.58 16 32 H 0.13 5.99 6.77 -2.91 -0.02 5.97 16 33 H 0.29 15.11 6.22 -92.71 -0.58 14.54 16 Total: -1.00 -66.88 334.42 0.92 -65.96 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.69 Total: 27.11 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 5.62 Total: -18.35 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -3.49 Total: -88.08 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.07 Total: -32.87 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.06 Total: 44.76 kcal Atomic # 16 Polarization: 5.35 SS G_CDS: -3.88 Total: 1.47 kcal Total: -66.88 0.92 -65.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867665584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.614 kcal (2) G-P(sol) polarization free energy of solvation -66.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds