Wall clock time and date at job start Sat Apr 11 2020 06:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00249 * 2 1 4 4 H 1.48493 * 109.47255 * 240.00100 * 3 2 1 5 5 H 1.48498 * 109.46983 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46931 * 120.00046 * 3 2 1 7 7 C 1.37873 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99908 * 172.54902 * 7 2 1 9 9 C 1.50699 * 120.00145 * 352.53926 * 7 2 1 10 10 C 1.53001 * 115.54973 * 84.73958 * 9 7 2 11 11 N 1.46503 * 109.47183 * 65.11247 * 10 9 7 12 12 S 1.65599 * 119.99856 * 164.44705 * 11 10 9 13 13 O 1.42103 * 104.27428 * 308.92630 * 12 11 10 14 14 O 1.42098 * 104.27752 * 181.07082 * 12 11 10 15 15 C 1.81389 * 104.45310 * 64.99863 * 12 11 10 16 16 C 1.52999 * 109.47496 * 180.02562 * 15 12 11 17 17 C 1.52997 * 109.47703 * 179.97438 * 16 15 12 18 18 H 1.09000 * 115.54856 * 29.42055 * 17 16 15 19 19 C 1.52998 * 117.52206 * 243.71504 * 17 16 15 20 20 C 1.52999 * 60.00117 * 252.51805 * 19 17 16 21 21 Cl 1.80299 * 117.49816 * 252.50914 * 20 19 17 22 22 Cl 1.80295 * 117.51745 * 107.48049 * 20 19 17 23 23 C 1.53001 * 117.50035 * 230.40543 * 9 7 2 24 24 C 1.52997 * 117.50130 * 299.06790 * 9 7 2 25 25 H 0.97000 * 119.99758 * 5.02583 * 1 2 3 26 26 H 1.09004 * 109.47025 * 305.11632 * 10 9 7 27 27 H 1.08992 * 109.47639 * 185.11538 * 10 9 7 28 28 H 0.97001 * 119.99825 * 344.44299 * 11 10 9 29 29 H 1.09001 * 109.47452 * 59.99979 * 15 12 11 30 30 H 1.09006 * 109.47479 * 299.99767 * 15 12 11 31 31 H 1.08999 * 109.47398 * 59.99651 * 16 15 12 32 32 H 1.09001 * 109.47142 * 300.00151 * 16 15 12 33 33 H 1.09006 * 117.49558 * 0.02562 * 19 17 16 34 34 H 1.09001 * 117.50108 * 145.02214 * 19 17 16 35 35 H 1.09000 * 117.49766 * 215.00511 * 23 9 7 36 36 H 1.09001 * 117.50042 * 0.02562 * 23 9 7 37 37 H 1.09000 * 117.50038 * 359.97248 * 24 9 7 38 38 H 1.08994 * 117.50046 * 144.97269 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0777 -1.1980 -0.1218 9 6 1.2605 -2.4937 0.1683 10 6 0.6710 -3.0878 -1.1124 11 7 1.7569 -3.4637 -2.0213 12 16 1.4545 -4.4704 -3.3009 13 8 0.7801 -5.5794 -2.7225 14 8 2.7194 -4.6284 -3.9289 15 6 0.3295 -3.5253 -4.3645 16 6 -0.0288 -4.3590 -5.5963 17 6 -0.9783 -3.5622 -6.4931 18 1 -0.8667 -2.4787 -6.4505 19 6 -2.3877 -4.1196 -6.7023 20 6 -1.3647 -4.1801 -7.8384 21 17 -1.6007 -3.0605 -9.2318 22 17 -0.6663 -5.7917 -8.2455 23 6 1.7752 -3.4698 1.2281 24 6 0.4765 -2.6954 1.4666 25 1 -0.4850 0.8368 -0.0736 26 1 0.0324 -2.3483 -1.5956 27 1 0.0817 -3.9709 -0.8657 28 1 2.6529 -3.1227 -1.8735 29 1 0.8164 -2.6023 -4.6791 30 1 -0.5789 -3.2865 -3.8112 31 1 -0.5159 -5.2819 -5.2814 32 1 0.8793 -4.5982 -6.1498 33 1 -2.6389 -5.0541 -6.2006 34 1 -3.2034 -3.4028 -6.7972 35 1 1.6938 -4.5353 1.0128 36 1 2.6517 -3.1719 1.8035 37 1 0.4992 -1.8883 2.1989 38 1 -0.4594 -3.2510 1.4083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882150016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:57 Heat of formation + Delta-G solvation = -63.666591 kcal Electronic energy + Delta-G solvation = -23021.261035 eV Core-core repulsion = 19271.349227 eV Total energy + Delta-G solvation = -3749.911809 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.36435 -38.76871 -38.06444 -37.05873 -36.97655 -36.78782 -34.79614 -33.89394 -33.35856 -27.77949 -26.57966 -25.79769 -23.26843 -22.86885 -21.82155 -21.18865 -20.13544 -18.50738 -18.17339 -17.60227 -17.23707 -17.09138 -16.58163 -16.12807 -15.81225 -15.65090 -15.16468 -14.51185 -14.35033 -14.07214 -13.87857 -13.69863 -13.41253 -13.19747 -13.07376 -13.05326 -12.93845 -12.91573 -12.81591 -12.78242 -12.43837 -12.31212 -12.23119 -11.99162 -11.95096 -11.74875 -11.34027 -11.27037 -10.84193 -10.71975 -10.43291 -10.09602 -9.90885 -8.05282 -6.15737 -0.64608 0.16111 1.14936 1.46244 1.50166 1.54597 1.85454 2.16197 2.46869 2.81084 3.07096 3.22217 3.28516 3.31405 3.56140 3.66233 3.86077 3.93431 4.22983 4.31705 4.50885 4.59883 4.64997 4.67907 4.68897 4.73120 4.81665 4.88308 5.02161 5.05801 5.31773 5.39046 5.66865 5.76726 5.83825 6.29582 6.46540 6.89190 7.52394 9.01832 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.002992 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.149556 B = 9357.111666 C =10478.611640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.038 3.962 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.281 1.281 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.016 3.984 10 C 0.165 3.835 11 N -1.104 6.104 12 S 2.616 3.384 13 O -0.992 6.992 14 O -0.995 6.995 15 C -0.609 4.609 16 C -0.095 4.095 17 C -0.106 4.106 18 H 0.147 0.853 19 C -0.127 4.127 20 C -0.014 4.014 21 Cl -0.102 7.102 22 Cl -0.105 7.105 23 C -0.195 4.195 24 C -0.157 4.157 25 H 0.261 0.739 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.418 0.582 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.236 -6.298 -14.769 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.014 3.986 10 C 0.039 3.961 11 N -0.863 5.863 12 S 2.712 3.288 13 O -0.983 6.983 14 O -0.986 6.986 15 C -0.741 4.741 16 C -0.134 4.134 17 C -0.126 4.126 18 H 0.165 0.835 19 C -0.164 4.164 20 C -0.065 4.065 21 Cl -0.075 7.075 22 Cl -0.078 7.078 23 C -0.232 4.232 24 C -0.196 4.196 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.253 0.747 29 H 0.175 0.825 30 H 0.174 0.826 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.174 -7.167 -14.970 17.708 hybrid contribution 0.571 1.739 -0.061 1.831 sum -5.604 -5.429 -15.031 16.935 Atomic orbital electron populations 1.70027 1.06633 1.27384 1.49509 1.25478 0.95439 1.01088 0.94365 0.85919 0.78618 0.80274 0.78564 1.19666 1.21311 1.20668 1.20584 0.93109 0.89937 1.50973 0.92801 1.19047 0.98852 0.93860 0.86846 1.20709 0.87414 0.96956 0.91026 1.55176 1.19088 1.69073 1.43004 1.04503 0.74985 0.74818 0.74464 1.93534 1.77541 1.50969 1.76216 1.93535 1.41156 1.86378 1.77530 1.30440 1.17984 1.14561 1.11151 1.21113 1.01011 0.97954 0.93275 1.23256 0.97106 1.01949 0.90313 0.83533 1.24331 0.93361 1.05618 0.93081 1.27039 1.09843 0.84816 0.84825 1.98754 1.96967 1.62855 1.48907 1.98756 1.86064 1.28149 1.94800 1.23009 0.97517 0.96495 1.06223 1.22492 0.93829 1.01102 1.02179 0.92961 0.91766 0.92537 0.74733 0.82537 0.82596 0.88638 0.89121 0.84713 0.84071 0.89807 0.90556 0.92010 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.61 12.97 21.45 0.28 -45.34 16 2 C 0.04 1.86 5.38 84.65 0.46 2.32 16 3 Si 0.94 39.87 29.55 68.60 2.03 41.90 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.51 -24.77 8.47 25.60 0.22 -24.55 16 8 H 0.05 2.63 7.83 -2.91 -0.02 2.61 16 9 C 0.02 0.69 1.43 -52.93 -0.08 0.62 16 10 C 0.17 6.30 5.96 86.38 0.52 6.81 16 11 N -1.10 -37.32 5.84 -187.49 -1.09 -38.42 16 12 S 2.62 76.64 5.46 -56.49 -0.31 76.33 16 13 O -0.99 -34.50 17.49 -127.65 -2.23 -36.73 16 14 O -1.00 -34.37 18.08 -127.65 -2.31 -36.68 16 15 C -0.61 -12.01 6.03 71.98 0.43 -11.58 16 16 C -0.09 -1.67 4.59 30.59 0.14 -1.53 16 17 C -0.11 -1.53 5.58 -10.79 -0.06 -1.59 16 18 H 0.15 1.83 8.08 -2.39 -0.02 1.81 16 19 C -0.13 -1.45 9.86 30.59 0.30 -1.14 16 20 C -0.01 -0.22 3.62 30.59 0.11 -0.11 16 21 Cl -0.10 -1.73 29.29 -2.72 -0.08 -1.81 16 22 Cl -0.10 -1.92 28.23 -2.72 -0.08 -2.00 16 23 C -0.20 -7.89 9.96 30.62 0.30 -7.59 16 24 C -0.16 -6.79 9.49 30.62 0.29 -6.50 16 25 H 0.26 12.82 8.32 -92.71 -0.77 12.05 16 26 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 27 H 0.06 2.05 7.63 -2.39 -0.02 2.03 16 28 H 0.42 14.53 8.34 -96.74 -0.81 13.73 16 29 H 0.16 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.16 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.10 1.56 7.88 -2.39 -0.02 1.54 16 32 H 0.09 1.65 8.02 -2.39 -0.02 1.63 16 33 H 0.13 1.29 8.03 -2.38 -0.02 1.27 16 34 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -62.29 367.85 -0.89 -63.18 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.27 Total: 24.40 kcal Atomic # 6 Polarization: -47.46 SS G_CDS: 2.63 Total: -44.83 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -0.82 Total: -83.76 kcal Atomic # 8 Polarization: -68.87 SS G_CDS: -4.54 Total: -73.41 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Atomic # 16 Polarization: 76.64 SS G_CDS: -0.31 Total: 76.33 kcal Atomic # 17 Polarization: -3.65 SS G_CDS: -0.16 Total: -3.81 kcal Total: -62.29 -0.89 -63.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882150016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.490 kcal (2) G-P(sol) polarization free energy of solvation -62.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds