Wall clock time and date at job start Sat Apr 11 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00026 * 2 1 4 4 H 1.48499 * 109.47210 * 240.00846 * 3 2 1 5 5 H 1.48502 * 109.46961 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46985 * 120.00539 * 3 2 1 7 7 C 1.37879 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99561 * 188.17474 * 7 2 1 9 9 C 1.50696 * 119.99945 * 8.17736 * 7 2 1 10 10 C 1.53005 * 115.54498 * 276.53291 * 9 7 2 11 11 N 1.46495 * 109.47507 * 320.07446 * 10 9 7 12 12 S 1.65598 * 120.00118 * 163.77827 * 11 10 9 13 13 O 1.42103 * 104.28010 * 181.07665 * 12 11 10 14 14 O 1.42108 * 104.27694 * 308.93375 * 12 11 10 15 15 C 1.81396 * 104.44929 * 65.00017 * 12 11 10 16 16 C 1.53000 * 109.47094 * 179.97438 * 15 12 11 17 17 C 1.53005 * 109.47203 * 180.02562 * 16 15 12 18 18 H 1.08998 * 115.54830 * 330.66707 * 17 16 15 19 19 C 1.52991 * 117.49945 * 116.38194 * 17 16 15 20 20 C 1.52995 * 60.00332 * 107.49198 * 19 17 16 21 21 Cl 1.80301 * 117.49611 * 252.51179 * 20 19 17 22 22 Cl 1.80292 * 117.50347 * 107.49139 * 20 19 17 23 23 C 1.52998 * 117.50273 * 62.20586 * 9 7 2 24 24 C 1.53000 * 60.03276 * 107.47805 * 23 9 7 25 25 H 0.97001 * 120.00138 * 354.96750 * 1 2 3 26 26 H 1.08998 * 109.47128 * 80.08015 * 10 9 7 27 27 H 1.09003 * 109.46993 * 200.07531 * 10 9 7 28 28 H 0.97004 * 120.00070 * 343.78126 * 11 10 9 29 29 H 1.08997 * 109.47519 * 300.00123 * 15 12 11 30 30 H 1.09004 * 109.46805 * 60.00329 * 15 12 11 31 31 H 1.08994 * 109.47634 * 299.99925 * 16 15 12 32 32 H 1.09004 * 109.46966 * 60.00501 * 16 15 12 33 33 H 1.09007 * 117.49733 * 214.98193 * 19 17 16 34 34 H 1.08998 * 117.50448 * 359.97438 * 19 17 16 35 35 H 1.08996 * 117.49483 * 214.98024 * 23 9 7 36 36 H 1.08994 * 117.49681 * 359.97438 * 23 9 7 37 37 H 1.09001 * 117.49727 * 107.50182 * 24 23 9 38 38 H 1.09003 * 117.50072 * 252.52480 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0763 -1.1988 0.1325 9 6 1.2625 -2.4924 -0.1867 10 6 0.6334 -3.0801 1.0781 11 7 1.5488 -2.9005 2.2077 12 16 0.9925 -3.0654 3.7586 13 8 2.1295 -2.8010 4.5689 14 8 -0.1547 -2.2282 3.8104 15 6 0.5130 -4.8104 3.8844 16 6 -0.0234 -5.0919 5.2893 17 6 -0.4272 -6.5639 5.3956 18 1 -0.7574 -7.0290 4.4667 19 6 0.3410 -7.4372 6.3894 20 6 -1.0996 -7.0202 6.6920 21 17 -1.3554 -5.7822 7.9776 22 17 -2.3768 -8.2866 6.5664 23 6 0.5173 -2.6972 -1.5072 24 6 1.8058 -3.4737 -1.2284 25 1 -0.4850 0.8368 0.0737 26 1 -0.3065 -2.5694 1.2874 27 1 0.4440 -4.1432 0.9295 28 1 2.4809 -2.6849 2.0471 29 1 -0.2614 -5.0283 3.1490 30 1 1.3820 -5.4405 3.6946 31 1 0.7512 -4.8742 6.0245 32 1 -0.8923 -4.4618 5.4795 33 1 0.5167 -8.4773 6.1145 34 1 1.1344 -6.9633 6.9674 35 1 -0.4210 -3.2509 -1.4748 36 1 0.5634 -1.8926 -2.2410 37 1 1.7151 -4.5383 -1.0127 38 1 2.6997 -3.1798 -1.7786 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882150025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:00 Heat of formation + Delta-G solvation = -41.952167 kcal Electronic energy + Delta-G solvation = -23071.414694 eV Core-core repulsion = 19322.444493 eV Total energy + Delta-G solvation = -3748.970201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.73395 -37.07891 -36.58585 -36.39102 -36.11385 -35.46889 -33.24480 -32.53948 -31.95709 -25.84521 -24.95938 -24.94622 -22.69759 -21.22052 -21.14245 -19.43334 -18.73906 -17.16864 -16.85481 -16.59527 -16.03450 -15.61333 -15.20218 -14.89930 -14.55037 -14.08821 -13.64473 -13.43215 -13.22621 -13.07350 -12.77348 -12.44997 -12.37660 -12.09981 -11.95995 -11.69795 -11.64843 -11.53540 -11.51853 -11.25740 -11.23476 -10.98138 -10.88744 -10.68666 -10.58424 -10.51805 -10.28176 -10.03541 -9.58702 -8.99832 -8.68465 -8.46309 -8.07947 -6.04474 -4.11715 0.62293 0.81305 1.80017 2.74327 3.25612 3.32063 3.37539 3.39178 3.67246 3.85914 4.17515 4.40030 4.41151 4.45624 4.56317 4.88878 5.03125 5.07685 5.19600 5.22690 5.23691 5.45025 5.50443 5.72297 5.87808 6.15691 6.29283 6.37833 6.43468 6.66076 7.01022 7.01595 7.35516 7.50166 7.83604 7.87412 8.37029 8.87769 9.54907 11.03722 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.002755 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.816712 B =10162.613722 C =10814.561764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.077 3.923 3 Si 0.886 3.114 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.041 3.959 10 C 0.157 3.843 11 N -1.086 6.086 12 S 2.608 3.392 13 O -0.970 6.970 14 O -0.947 6.947 15 C -0.640 4.640 16 C -0.087 4.087 17 C -0.103 4.103 18 H 0.136 0.864 19 C -0.142 4.142 20 C -0.005 4.005 21 Cl -0.089 7.089 22 Cl -0.095 7.095 23 C -0.157 4.157 24 C -0.212 4.212 25 H 0.263 0.737 26 H 0.080 0.920 27 H 0.030 0.970 28 H 0.419 0.581 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 -16.944 11.038 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.128 4.128 3 Si 0.714 3.286 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.039 3.961 10 C 0.031 3.969 11 N -0.848 5.848 12 S 2.698 3.302 13 O -0.960 6.960 14 O -0.937 6.937 15 C -0.767 4.767 16 C -0.126 4.126 17 C -0.123 4.123 18 H 0.153 0.847 19 C -0.180 4.180 20 C -0.056 4.056 21 Cl -0.062 7.062 22 Cl -0.068 7.068 23 C -0.196 4.196 24 C -0.249 4.249 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.048 0.952 28 H 0.256 0.744 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.934 -16.185 11.753 20.096 hybrid contribution 0.460 0.239 -0.341 0.620 sum -1.474 -15.946 11.412 19.664 Atomic orbital electron populations 1.69925 1.05862 1.27144 1.47473 1.24951 0.94786 0.98876 0.94173 0.86755 0.79801 0.83376 0.78698 1.20229 1.21214 1.20066 1.20207 0.93140 0.88566 1.52048 0.92167 1.18920 0.97670 0.93958 0.85571 1.20852 0.92817 0.95829 0.87417 1.55057 1.21559 1.86329 1.21833 1.04927 0.74676 0.76875 0.73702 1.93560 1.50360 1.83908 1.68172 1.93628 1.52952 1.61269 1.85821 1.30787 1.12063 1.29575 1.04231 1.20996 1.02612 0.94393 0.94553 1.23271 0.98825 0.96883 0.93360 0.84658 1.24135 0.90912 1.02639 1.00312 1.26863 0.91495 0.91416 0.95864 1.98764 1.97143 1.55808 1.54453 1.98754 1.56407 1.53880 1.97793 1.22547 0.92780 1.01297 1.02928 1.23097 0.98145 0.95460 1.08183 0.92708 0.90187 0.95232 0.74409 0.84729 0.84792 0.89365 0.88781 0.85917 0.85766 0.91711 0.89954 0.91650 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.11 13.05 55.43 0.72 -23.39 16 2 C 0.08 2.06 5.39 -17.82 -0.10 1.96 16 3 Si 0.89 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.50 -12.79 7.68 -34.44 -0.26 -13.05 16 8 H 0.06 1.52 7.83 -52.49 -0.41 1.10 16 9 C 0.04 0.91 1.64 -155.62 -0.26 0.66 16 10 C 0.16 3.10 6.22 -4.04 -0.03 3.07 16 11 N -1.09 -19.75 5.49 -10.61 -0.06 -19.81 16 12 S 2.61 42.66 5.46 -107.50 -0.59 42.08 16 13 O -0.97 -17.94 18.08 -57.54 -1.04 -18.98 16 14 O -0.95 -19.56 17.48 -57.54 -1.01 -20.57 16 15 C -0.64 -6.69 6.03 37.16 0.22 -6.47 16 16 C -0.09 -0.86 4.59 -26.73 -0.12 -0.98 16 17 C -0.10 -0.82 5.58 -90.62 -0.51 -1.32 16 18 H 0.14 0.92 8.07 -51.93 -0.42 0.50 16 19 C -0.14 -0.91 9.86 -26.74 -0.26 -1.17 16 20 C 0.00 -0.04 3.62 -26.73 -0.10 -0.14 16 21 Cl -0.09 -0.88 28.23 -51.86 -1.46 -2.34 16 22 Cl -0.10 -0.85 29.29 -51.86 -1.52 -2.37 16 23 C -0.16 -3.38 9.60 -26.73 -0.26 -3.64 16 24 C -0.21 -4.13 9.89 -26.69 -0.26 -4.39 16 25 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 26 H 0.08 1.78 7.67 -51.93 -0.40 1.38 16 27 H 0.03 0.47 7.95 -51.93 -0.41 0.06 16 28 H 0.42 7.67 7.98 -34.47 -0.27 7.39 16 29 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.13 1.08 8.14 -51.92 -0.42 0.66 16 31 H 0.09 0.81 7.87 -51.93 -0.41 0.40 16 32 H 0.09 0.98 8.02 -51.93 -0.42 0.56 16 33 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.12 0.70 8.03 -51.93 -0.42 0.28 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.92 8.14 -51.93 -0.42 1.49 16 37 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 38 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -32.06 366.73 -11.62 -43.69 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.25 Total: 5.70 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -1.93 Total: -25.47 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.67 Total: -43.20 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -2.05 Total: -39.55 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 42.66 SS G_CDS: -0.59 Total: 42.08 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -2.98 Total: -4.71 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.06 -11.62 -43.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882150025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.734 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds