Wall clock time and date at job start Sat Apr 11 2020 06:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 120.00273 * 2 1 4 4 H 1.48497 * 109.47319 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46816 * 300.00279 * 3 2 1 6 6 H 1.48501 * 109.47099 * 59.99932 * 3 2 1 7 7 C 1.38955 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99918 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99464 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99813 * 359.72559 * 10 9 7 12 12 C 1.50694 * 119.99988 * 179.72439 * 10 9 7 13 13 N 1.46497 * 109.47115 * 180.02562 * 12 10 9 14 14 N 1.40080 * 126.03800 * 90.02423 * 13 12 10 15 15 C 1.30839 * 108.23111 * 179.97438 * 14 13 12 16 16 C 1.50704 * 125.89405 * 180.02562 * 15 14 13 17 17 F 1.39897 * 109.46803 * 4.96884 * 16 15 14 18 18 F 1.39895 * 109.47259 * 124.97547 * 16 15 14 19 19 F 1.39900 * 109.47062 * 244.97514 * 16 15 14 20 20 C 1.39865 * 108.21509 * 359.97438 * 15 14 13 21 21 C 1.34984 * 126.03487 * 269.71392 * 13 12 10 22 22 Br 1.89093 * 126.14204 * 0.02562 * 21 13 12 23 23 H 0.97000 * 119.99610 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00868 * 359.72070 * 9 7 2 25 25 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 26 26 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 27 27 H 1.08003 * 126.04486 * 180.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 -0.0045 12 6 1.2436 -4.8629 0.0068 13 7 2.1956 -5.9764 0.0061 14 7 2.7350 -6.6002 1.1385 15 6 3.5427 -7.5484 0.7378 16 6 4.3344 -8.4700 1.6294 17 9 3.9908 -8.2354 2.9651 18 9 4.0462 -9.7987 1.3001 19 9 5.7013 -8.2311 1.4507 20 6 3.5436 -7.5599 -0.6608 21 6 2.7033 -6.5864 -1.0857 22 35 2.3141 -6.1566 -2.8856 23 1 -0.4849 0.8401 0.0004 24 1 0.3533 -2.3907 0.0043 25 1 0.6207 -4.9185 0.8995 26 1 0.6133 -4.9228 -0.8804 27 1 4.1110 -8.2292 -1.2905 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882192181.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:04 Heat of formation + Delta-G solvation = -99.398573 kcal Electronic energy + Delta-G solvation = -21162.306128 eV Core-core repulsion = 16974.866979 eV Total energy + Delta-G solvation = -4187.439149 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 340.973 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.18548 -47.71976 -47.66594 -41.56312 -38.36243 -34.36107 -33.59377 -32.21707 -31.47018 -29.44088 -28.74079 -26.06771 -24.49413 -21.41112 -21.23570 -19.68816 -18.58123 -18.40366 -18.13197 -17.87403 -16.70630 -16.32108 -15.03602 -14.72055 -14.60646 -14.53060 -14.33120 -14.10562 -14.03400 -13.82405 -13.81691 -13.69039 -13.58996 -12.69572 -12.44238 -11.98841 -11.71913 -11.40907 -11.30964 -11.17981 -10.57136 -10.47566 -10.40020 -9.81954 -9.73629 -9.00167 -8.53786 -8.20663 -6.61370 -4.03072 0.93162 1.35552 1.92302 2.06406 2.76331 3.03222 3.17974 3.25072 3.51871 3.59342 3.91357 4.01693 4.32856 4.59392 4.64347 5.03256 5.07194 5.20786 5.34739 5.39504 5.84635 6.00153 6.44542 7.12677 7.38030 7.80405 8.33227 8.95332 9.24584 9.73031 10.55318 Molecular weight = 340.97amu Principal moments of inertia in cm(-1) A = 0.014027 B = 0.004002 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.674746 B = 6994.894167 C = 8344.408863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.028 3.972 3 Si 0.932 3.068 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.545 5.545 10 C 0.419 3.581 11 O -0.575 6.575 12 C 0.105 3.895 13 N -0.297 5.297 14 N -0.199 5.199 15 C -0.027 4.027 16 C 0.561 3.439 17 F -0.166 7.166 18 F -0.168 7.168 19 F -0.165 7.165 20 C -0.195 4.195 21 C 0.091 3.909 22 Br 0.037 6.963 23 H 0.275 0.725 24 H 0.395 0.605 25 H 0.123 0.877 26 H 0.118 0.882 27 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.073 -15.916 -4.094 16.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.175 4.175 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.181 5.181 10 C 0.202 3.798 11 O -0.459 6.459 12 C -0.020 4.020 13 N -0.080 5.080 14 N -0.026 5.026 15 C -0.193 4.193 16 C 0.505 3.495 17 F -0.147 7.147 18 F -0.149 7.149 19 F -0.147 7.147 20 C -0.227 4.227 21 C -0.115 4.115 22 Br 0.120 6.880 23 H 0.085 0.915 24 H 0.228 0.772 25 H 0.141 0.859 26 H 0.136 0.864 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.018 -14.886 -3.732 15.380 hybrid contribution 0.237 0.388 -0.180 0.489 sum 1.255 -14.498 -3.912 15.069 Atomic orbital electron populations 1.69605 1.06012 1.28575 1.49214 1.25318 0.95688 0.99938 0.96604 0.85753 0.79790 0.80667 0.77912 1.19057 1.20510 1.20507 1.19775 0.93514 0.81694 1.48135 0.87583 1.41748 1.09320 1.04225 1.62823 1.19609 0.88611 0.84446 0.87104 1.90618 1.13116 1.86365 1.55809 1.21883 0.89620 0.83998 1.06461 1.48221 1.33352 1.24950 1.01524 1.77462 1.10898 1.06980 1.07222 1.21848 1.03171 1.00069 0.94219 1.16756 0.77148 0.77892 0.77732 1.93240 1.91947 1.94260 1.35232 1.93224 1.93328 1.35935 1.92447 1.93249 1.32039 1.94238 1.95147 1.20876 1.05370 1.03803 0.92607 1.22839 1.01719 0.98262 0.88692 1.96841 1.93880 1.93994 1.03310 0.91542 0.77151 0.85924 0.86419 0.81430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.96 13.05 55.50 0.72 -22.23 15 2 C 0.03 0.70 5.50 -17.47 -0.10 0.61 15 3 Si 0.93 20.22 29.55 -169.99 -5.02 15.20 15 4 H -0.27 -5.84 7.11 56.52 0.40 -5.43 15 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 7 C -0.30 -8.00 9.68 -14.93 -0.14 -8.15 15 8 H 0.11 3.00 7.16 -52.49 -0.38 2.62 15 9 N -0.55 -12.88 5.29 -10.96 -0.06 -12.94 15 10 C 0.42 9.33 7.85 -10.98 -0.09 9.25 15 11 O -0.57 -15.24 16.01 5.54 0.09 -15.15 15 12 C 0.10 1.75 6.73 -5.20 -0.03 1.71 15 13 N -0.30 -5.17 3.10 -60.76 -0.19 -5.35 15 14 N -0.20 -3.59 12.35 33.67 0.42 -3.18 15 15 C -0.03 -0.43 6.51 -82.40 -0.54 -0.96 15 16 C 0.56 7.68 3.51 36.01 0.13 7.81 15 17 F -0.17 -2.40 17.14 2.25 0.04 -2.36 15 18 F -0.17 -2.03 17.30 2.25 0.04 -1.99 15 19 F -0.17 -2.27 17.30 2.25 0.04 -2.23 15 20 C -0.19 -2.79 10.70 -39.97 -0.43 -3.22 15 21 C 0.09 1.43 7.34 -17.17 -0.13 1.30 15 22 Br 0.04 0.49 33.36 -68.01 -2.27 -1.78 15 23 H 0.27 6.66 8.31 -40.82 -0.34 6.32 15 24 H 0.39 8.68 7.90 -40.82 -0.32 8.36 15 25 H 0.12 1.75 8.14 -51.93 -0.42 1.33 15 26 H 0.12 1.60 7.65 -51.93 -0.40 1.20 15 27 H 0.17 1.85 8.06 -52.48 -0.42 1.42 15 LS Contribution 290.79 15.07 4.38 4.38 Total: -1.00 -30.38 290.79 -4.21 -34.59 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -1.08 Total: 4.71 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -1.33 Total: 8.34 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.89 Total: -43.70 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: 0.09 Total: -15.15 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 0.12 Total: -6.58 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 35 Polarization: 0.49 SS G_CDS: -2.27 Total: -1.78 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.38 -4.21 -34.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882192181.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.811 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds