Wall clock time and date at job start Sat Apr 11 2020 06:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 120.00273 * 2 1 4 4 H 1.48497 * 109.47319 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46816 * 300.00279 * 3 2 1 6 6 H 1.48501 * 109.47099 * 59.99932 * 3 2 1 7 7 C 1.38955 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99918 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99464 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99813 * 359.72559 * 10 9 7 12 12 C 1.50694 * 119.99988 * 179.72439 * 10 9 7 13 13 N 1.46497 * 109.47115 * 180.02562 * 12 10 9 14 14 N 1.40080 * 126.03800 * 90.02423 * 13 12 10 15 15 C 1.30839 * 108.23111 * 179.97438 * 14 13 12 16 16 C 1.50704 * 125.89405 * 180.02562 * 15 14 13 17 17 F 1.39897 * 109.46803 * 4.96884 * 16 15 14 18 18 F 1.39895 * 109.47259 * 124.97547 * 16 15 14 19 19 F 1.39900 * 109.47062 * 244.97514 * 16 15 14 20 20 C 1.39865 * 108.21509 * 359.97438 * 15 14 13 21 21 C 1.34984 * 126.03487 * 269.71392 * 13 12 10 22 22 Br 1.89093 * 126.14204 * 0.02562 * 21 13 12 23 23 H 0.97000 * 119.99610 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00868 * 359.72070 * 9 7 2 25 25 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 26 26 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 27 27 H 1.08003 * 126.04486 * 180.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 -0.0045 12 6 1.2436 -4.8629 0.0068 13 7 2.1956 -5.9764 0.0061 14 7 2.7350 -6.6002 1.1385 15 6 3.5427 -7.5484 0.7378 16 6 4.3344 -8.4700 1.6294 17 9 3.9908 -8.2354 2.9651 18 9 4.0462 -9.7987 1.3001 19 9 5.7013 -8.2311 1.4507 20 6 3.5436 -7.5599 -0.6608 21 6 2.7033 -6.5864 -1.0857 22 35 2.3141 -6.1566 -2.8856 23 1 -0.4849 0.8401 0.0004 24 1 0.3533 -2.3907 0.0043 25 1 0.6207 -4.9185 0.8995 26 1 0.6133 -4.9228 -0.8804 27 1 4.1110 -8.2292 -1.2905 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882192181.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:04 Heat of formation + Delta-G solvation = -119.516804 kcal Electronic energy + Delta-G solvation = -21163.178520 eV Core-core repulsion = 16974.866979 eV Total energy + Delta-G solvation = -4188.311541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 340.973 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.27192 -48.78221 -48.76973 -42.78878 -40.16363 -36.19721 -34.99561 -33.49226 -33.28072 -30.62760 -30.06989 -27.55802 -26.11626 -22.66995 -22.48648 -21.31025 -20.12826 -19.66071 -19.39278 -19.05721 -18.29410 -17.69531 -16.75001 -16.18164 -16.05481 -15.73596 -15.62461 -15.55033 -15.18306 -15.01533 -14.90152 -14.89431 -14.84808 -14.41336 -13.67344 -13.57877 -13.34709 -12.93719 -12.55395 -12.49878 -12.47734 -12.15490 -11.68365 -11.61809 -11.22034 -10.46016 -10.13150 -9.98447 -8.55106 -6.04276 -0.23115 0.11667 0.73215 0.91433 1.31011 1.41067 1.53459 1.61455 1.82408 2.24543 2.44278 2.79050 2.94555 3.09736 3.24477 3.49176 3.85691 3.98182 4.11075 4.16920 4.24860 4.87051 5.20852 5.35471 5.86959 5.89980 6.44601 7.01304 7.36933 7.90804 8.61388 Molecular weight = 340.97amu Principal moments of inertia in cm(-1) A = 0.014027 B = 0.004002 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.674746 B = 6994.894167 C = 8344.408863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.004 4.004 3 Si 0.990 3.010 4 H -0.276 1.276 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.079 0.921 9 N -0.552 5.552 10 C 0.422 3.578 11 O -0.620 6.620 12 C 0.114 3.886 13 N -0.313 5.313 14 N -0.235 5.235 15 C -0.031 4.031 16 C 0.570 3.430 17 F -0.171 7.171 18 F -0.155 7.155 19 F -0.164 7.164 20 C -0.188 4.188 21 C 0.077 3.923 22 Br 0.058 6.942 23 H 0.281 0.719 24 H 0.402 0.598 25 H 0.148 0.852 26 H 0.151 0.849 27 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.747 -16.494 -4.704 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.205 4.205 3 Si 0.814 3.186 4 H -0.200 1.200 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.463 4.463 8 H 0.097 0.903 9 N -0.188 5.188 10 C 0.207 3.793 11 O -0.507 6.507 12 C -0.010 4.010 13 N -0.097 5.097 14 N -0.061 5.061 15 C -0.197 4.197 16 C 0.513 3.487 17 F -0.152 7.152 18 F -0.136 7.136 19 F -0.146 7.146 20 C -0.220 4.220 21 C -0.128 4.128 22 Br 0.140 6.860 23 H 0.091 0.909 24 H 0.237 0.763 25 H 0.165 0.835 26 H 0.168 0.832 27 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.660 -15.480 -4.344 16.092 hybrid contribution 0.369 0.481 -0.029 0.607 sum 1.029 -14.999 -4.373 15.657 Atomic orbital electron populations 1.69643 1.06680 1.29628 1.49012 1.25993 0.96520 1.02244 0.95737 0.84913 0.78020 0.77196 0.78502 1.20030 1.19299 1.19572 1.19641 0.92673 0.83531 1.50443 0.90345 1.41750 1.09576 1.04159 1.63361 1.20504 0.88331 0.85844 0.84581 1.90585 1.15462 1.87471 1.57175 1.21846 0.89074 0.80799 1.09273 1.48274 1.34131 1.25330 1.01934 1.77390 1.12249 1.08206 1.08260 1.22232 1.02572 0.99640 0.95266 1.16545 0.76889 0.78062 0.77199 1.93230 1.92007 1.94360 1.35638 1.93250 1.93236 1.34858 1.92302 1.93253 1.31913 1.94301 1.95110 1.21332 1.04668 1.03614 0.92340 1.23286 1.01784 0.98376 0.89396 1.96857 1.93755 1.93953 1.01421 0.90938 0.76317 0.83467 0.83185 0.78262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.11 13.05 21.66 0.28 -45.83 15 2 C 0.00 -0.18 5.50 84.93 0.47 0.29 15 3 Si 0.99 41.19 29.55 68.60 2.03 43.22 15 4 H -0.28 -11.77 7.11 99.48 0.71 -11.06 15 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 15 6 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 7 C -0.33 -17.98 9.68 84.04 0.81 -17.17 15 8 H 0.08 4.60 7.16 -2.91 -0.02 4.58 15 9 N -0.55 -26.24 5.29 -306.97 -1.62 -27.86 15 10 C 0.42 18.81 7.85 87.65 0.69 19.50 15 11 O -0.62 -33.41 16.01 -3.08 -0.05 -33.46 15 12 C 0.11 3.65 6.73 85.63 0.58 4.23 15 13 N -0.31 -10.52 3.10 -346.16 -1.07 -11.60 15 14 N -0.24 -8.30 12.35 -47.38 -0.59 -8.88 15 15 C -0.03 -0.93 6.51 43.10 0.28 -0.65 15 16 C 0.57 14.81 3.51 71.24 0.25 15.06 15 17 F -0.17 -4.81 17.14 44.97 0.77 -4.04 15 18 F -0.16 -3.45 17.30 44.97 0.78 -2.67 15 19 F -0.16 -4.28 17.30 44.97 0.78 -3.50 15 20 C -0.19 -5.03 10.70 22.01 0.24 -4.79 15 21 C 0.08 2.29 7.34 83.56 0.61 2.91 15 22 Br 0.06 1.42 33.36 -20.37 -0.68 0.74 15 23 H 0.28 13.31 8.31 -92.71 -0.77 12.53 15 24 H 0.40 17.61 7.90 -92.71 -0.73 16.88 15 25 H 0.15 3.97 8.14 -2.39 -0.02 3.95 15 26 H 0.15 3.77 7.65 -2.39 -0.02 3.75 15 27 H 0.20 3.80 8.06 -2.91 -0.02 3.78 15 Total: -1.00 -65.22 290.79 5.09 -60.13 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.54 Total: 14.38 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 3.92 Total: 19.37 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -3.00 Total: -94.17 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.05 Total: -33.46 kcal Atomic # 9 Polarization: -12.54 SS G_CDS: 2.33 Total: -10.22 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 35 Polarization: 1.42 SS G_CDS: -0.68 Total: 0.74 kcal Total: -65.22 5.09 -60.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882192181.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.383 kcal (2) G-P(sol) polarization free energy of solvation -65.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds