Wall clock time and date at job start Sat Apr 11 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99971 * 2 1 4 4 H 1.48505 * 109.47384 * 270.00174 * 3 2 1 5 5 H 1.48501 * 109.47317 * 30.00196 * 3 2 1 6 6 H 1.48501 * 109.47464 * 150.00341 * 3 2 1 7 7 C 1.37879 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99488 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00033 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47204 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47545 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47305 * 179.97438 * 11 10 9 13 13 C 1.34778 * 120.00140 * 179.97438 * 12 11 10 14 14 O 1.21285 * 119.99831 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00129 * 180.02562 * 13 12 11 16 16 H 1.09001 * 109.46613 * 55.00656 * 15 13 12 17 17 O 1.42905 * 109.46996 * 175.00245 * 15 13 12 18 18 C 1.50698 * 109.47576 * 295.00690 * 15 13 12 19 19 C 1.38254 * 119.99777 * 99.99733 * 18 15 13 20 20 C 1.38213 * 120.02222 * 180.02562 * 19 18 15 21 21 C 1.38243 * 120.01222 * 359.97438 * 20 19 18 22 22 C 1.38309 * 119.98865 * 359.97438 * 21 20 19 23 23 Br 1.89093 * 120.01291 * 180.02562 * 22 21 20 24 24 C 1.38197 * 119.99082 * 279.72602 * 18 15 13 25 25 H 0.96995 * 120.00093 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47636 * 59.99873 * 9 7 2 27 27 H 1.09002 * 109.47323 * 299.99647 * 9 7 2 28 28 H 1.09002 * 109.47069 * 59.99533 * 10 9 7 29 29 H 1.08998 * 109.46990 * 300.00350 * 10 9 7 30 30 H 1.09002 * 109.47119 * 59.99808 * 11 10 9 31 31 H 1.08998 * 109.47462 * 300.00305 * 11 10 9 32 32 H 0.97001 * 120.00040 * 0.02562 * 12 11 10 33 33 H 0.96696 * 114.00036 * 60.00342 * 17 15 13 34 34 H 1.08005 * 119.99073 * 359.97438 * 19 18 15 35 35 H 1.08005 * 120.00214 * 179.97438 * 20 19 18 36 36 H 1.07994 * 120.01148 * 180.02562 * 21 20 19 37 37 H 1.07997 * 120.01033 * 359.97438 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 6 5.5516 -2.6364 -0.0035 12 7 6.0399 -4.0177 -0.0040 13 6 7.3650 -4.2639 -0.0056 14 8 8.1531 -3.3421 -0.0062 15 6 7.8674 -5.6847 -0.0067 16 1 7.4318 -6.2233 -0.8483 17 8 9.2915 -5.6863 -0.1257 18 6 7.4701 -6.3591 1.2811 19 6 6.3727 -7.1994 1.3113 20 6 6.0075 -7.8178 2.4923 21 6 6.7399 -7.5967 3.6437 22 6 7.8385 -6.7569 3.6138 23 35 8.8411 -6.4546 5.1882 24 6 8.2062 -6.1418 2.4303 25 1 -0.4850 0.8400 0.0004 26 1 3.8753 -0.6803 0.8887 27 1 3.8746 -0.6800 -0.8912 28 1 3.6579 -3.1497 -0.8924 29 1 3.6586 -3.1509 0.8875 30 1 5.9156 -2.1230 0.8864 31 1 5.9142 -2.1221 -0.8935 32 1 5.4096 -4.7550 -0.0039 33 1 9.7465 -5.2234 0.5909 34 1 5.8000 -7.3721 0.4120 35 1 5.1499 -8.4739 2.5156 36 1 6.4548 -8.0802 4.5664 37 1 9.0663 -5.4891 2.4055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900571707.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:21 Heat of formation + Delta-G solvation = -73.940258 kcal Electronic energy + Delta-G solvation = -20763.142656 eV Core-core repulsion = 17358.037640 eV Total energy + Delta-G solvation = -3405.105016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.70477 -39.16539 -36.84398 -35.51765 -33.54454 -32.91110 -31.97765 -31.35537 -29.77998 -28.13289 -26.46674 -23.20906 -22.89819 -22.11734 -20.88533 -20.14043 -18.27865 -17.69162 -16.85388 -16.56958 -16.27542 -15.58936 -15.34726 -14.92266 -14.45714 -14.21342 -14.01219 -13.90457 -13.78699 -13.49862 -12.74742 -12.58001 -12.21058 -12.01715 -11.97142 -11.67386 -11.41410 -11.13892 -11.12565 -10.93597 -10.66032 -10.25282 -10.03746 -9.83951 -9.70227 -9.30158 -9.26506 -9.08112 -8.99449 -8.58932 -6.09749 -4.08737 0.59620 0.75523 1.21693 2.43422 2.98756 3.18612 3.28722 3.36585 3.40456 3.99299 4.08527 4.30858 4.41334 4.52353 4.58451 4.72776 4.78085 4.97250 5.20853 5.24331 5.35556 5.46903 5.57466 5.69268 5.80857 5.90912 5.93481 6.21929 6.27698 6.37237 6.58490 6.72078 7.06697 7.17541 7.31090 7.45411 7.72231 8.09070 8.46323 8.93721 9.52456 11.03450 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.002592 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.281984 B =10800.559179 C =11429.538444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.113 3.887 12 N -0.717 5.717 13 C 0.484 3.516 14 O -0.533 6.533 15 C 0.136 3.864 16 H 0.136 0.864 17 O -0.529 6.529 18 C -0.113 4.113 19 C -0.091 4.091 20 C -0.107 4.107 21 C -0.086 4.086 22 C -0.085 4.085 23 Br -0.047 7.047 24 C -0.077 4.077 25 H 0.264 0.736 26 H 0.019 0.981 27 H 0.014 0.986 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.400 0.600 33 H 0.383 0.617 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.087 -20.001 8.072 28.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.010 4.010 12 N -0.368 5.368 13 C 0.268 3.732 14 O -0.409 6.409 15 C 0.073 3.927 16 H 0.153 0.847 17 O -0.334 6.334 18 C -0.115 4.115 19 C -0.109 4.109 20 C -0.125 4.125 21 C -0.106 4.106 22 C -0.165 4.165 23 Br 0.039 6.961 24 C -0.097 4.097 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.234 0.766 33 H 0.233 0.767 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 18.766 -19.413 8.135 28.199 hybrid contribution -0.210 0.854 0.197 0.902 sum 18.556 -18.559 8.332 27.535 Atomic orbital electron populations 1.69905 1.06317 1.27004 1.50900 1.25024 0.94745 0.99237 0.94423 0.86783 0.80403 0.83543 0.78616 1.20215 1.21324 1.18923 1.21079 0.89254 0.94513 1.51229 0.91003 1.19500 0.97324 0.91381 0.96678 1.21706 0.90440 1.01175 1.01766 1.21711 0.96330 0.80875 1.02093 1.46151 1.06471 1.10277 1.73925 1.21251 0.83253 0.91649 0.77008 1.90734 1.55306 1.45513 1.49395 1.20723 0.83644 0.92326 0.96050 0.84684 1.86626 1.15112 1.78666 1.52995 1.20252 0.97097 0.99168 0.94935 1.21176 0.95544 0.95156 0.99020 1.21206 0.99715 0.99707 0.91921 1.21220 0.93349 0.96496 0.99511 1.21747 0.98899 1.03146 0.92695 1.96763 1.71514 1.95910 1.31957 1.20833 0.99681 0.98397 0.90760 0.92657 0.96317 0.96730 0.92046 0.92070 0.91676 0.91542 0.76621 0.76720 0.84589 0.84408 0.84674 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.50 9.66 -34.44 -0.33 -14.84 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -2.02 5.27 -26.73 -0.14 -2.17 16 11 C 0.11 1.78 5.67 -4.05 -0.02 1.76 16 12 N -0.72 -9.05 5.51 -60.30 -0.33 -9.38 16 13 C 0.48 6.36 7.15 -10.99 -0.08 6.28 16 14 O -0.53 -9.11 16.32 -14.31 -0.23 -9.34 16 15 C 0.14 1.31 3.62 -29.04 -0.11 1.20 16 16 H 0.14 1.00 8.00 -51.93 -0.42 0.58 16 17 O -0.53 -5.68 12.84 -55.09 -0.71 -6.39 16 18 C -0.11 -0.99 4.92 -104.63 -0.52 -1.50 16 19 C -0.09 -0.64 9.67 -39.58 -0.38 -1.03 16 20 C -0.11 -0.73 10.05 -39.59 -0.40 -1.13 16 21 C -0.09 -0.68 9.79 -39.55 -0.39 -1.06 16 22 C -0.09 -0.78 6.22 -39.51 -0.25 -1.03 16 23 Br -0.05 -0.42 33.70 -68.01 -2.29 -2.71 16 24 C -0.08 -0.72 9.06 -39.55 -0.36 -1.08 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 26 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 27 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.40 3.95 8.47 -40.82 -0.35 3.60 16 33 H 0.38 3.43 7.24 45.56 0.33 3.76 16 34 H 0.14 0.62 8.04 -52.48 -0.42 0.20 16 35 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 36 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.13 1.16 6.77 -52.49 -0.36 0.80 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -33.65 339.43 -9.62 -43.27 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -4.10 Total: 2.37 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -3.18 Total: -13.12 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.44 Total: -36.07 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.94 Total: -15.73 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.29 Total: -2.71 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.65 -9.62 -43.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900571707.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.673 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds