Wall clock time and date at job start Sat Apr 11 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99971 * 2 1 4 4 H 1.48505 * 109.47384 * 270.00174 * 3 2 1 5 5 H 1.48501 * 109.47317 * 30.00196 * 3 2 1 6 6 H 1.48501 * 109.47464 * 150.00341 * 3 2 1 7 7 C 1.37879 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99488 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00033 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47204 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47545 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47305 * 179.97438 * 11 10 9 13 13 C 1.34778 * 120.00140 * 179.97438 * 12 11 10 14 14 O 1.21285 * 119.99831 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00129 * 180.02562 * 13 12 11 16 16 H 1.09001 * 109.46613 * 55.00656 * 15 13 12 17 17 O 1.42905 * 109.46996 * 175.00245 * 15 13 12 18 18 C 1.50698 * 109.47576 * 295.00690 * 15 13 12 19 19 C 1.38254 * 119.99777 * 99.99733 * 18 15 13 20 20 C 1.38213 * 120.02222 * 180.02562 * 19 18 15 21 21 C 1.38243 * 120.01222 * 359.97438 * 20 19 18 22 22 C 1.38309 * 119.98865 * 359.97438 * 21 20 19 23 23 Br 1.89093 * 120.01291 * 180.02562 * 22 21 20 24 24 C 1.38197 * 119.99082 * 279.72602 * 18 15 13 25 25 H 0.96995 * 120.00093 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47636 * 59.99873 * 9 7 2 27 27 H 1.09002 * 109.47323 * 299.99647 * 9 7 2 28 28 H 1.09002 * 109.47069 * 59.99533 * 10 9 7 29 29 H 1.08998 * 109.46990 * 300.00350 * 10 9 7 30 30 H 1.09002 * 109.47119 * 59.99808 * 11 10 9 31 31 H 1.08998 * 109.47462 * 300.00305 * 11 10 9 32 32 H 0.97001 * 120.00040 * 0.02562 * 12 11 10 33 33 H 0.96696 * 114.00036 * 60.00342 * 17 15 13 34 34 H 1.08005 * 119.99073 * 359.97438 * 19 18 15 35 35 H 1.08005 * 120.00214 * 179.97438 * 20 19 18 36 36 H 1.07994 * 120.01148 * 180.02562 * 21 20 19 37 37 H 1.07997 * 120.01033 * 359.97438 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 6 5.5516 -2.6364 -0.0035 12 7 6.0399 -4.0177 -0.0040 13 6 7.3650 -4.2639 -0.0056 14 8 8.1531 -3.3421 -0.0062 15 6 7.8674 -5.6847 -0.0067 16 1 7.4318 -6.2233 -0.8483 17 8 9.2915 -5.6863 -0.1257 18 6 7.4701 -6.3591 1.2811 19 6 6.3727 -7.1994 1.3113 20 6 6.0075 -7.8178 2.4923 21 6 6.7399 -7.5967 3.6437 22 6 7.8385 -6.7569 3.6138 23 35 8.8411 -6.4546 5.1882 24 6 8.2062 -6.1418 2.4303 25 1 -0.4850 0.8400 0.0004 26 1 3.8753 -0.6803 0.8887 27 1 3.8746 -0.6800 -0.8912 28 1 3.6579 -3.1497 -0.8924 29 1 3.6586 -3.1509 0.8875 30 1 5.9156 -2.1230 0.8864 31 1 5.9142 -2.1221 -0.8935 32 1 5.4096 -4.7550 -0.0039 33 1 9.7465 -5.2234 0.5909 34 1 5.8000 -7.3721 0.4120 35 1 5.1499 -8.4739 2.5156 36 1 6.4548 -8.0802 4.5664 37 1 9.0663 -5.4891 2.4055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900571707.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:21 Heat of formation + Delta-G solvation = -96.695080 kcal Electronic energy + Delta-G solvation = -20764.129379 eV Core-core repulsion = 17358.037640 eV Total energy + Delta-G solvation = -3406.091739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.55032 -39.98085 -37.74090 -36.82471 -35.21796 -33.79751 -33.22481 -32.38442 -30.45896 -29.41880 -27.67964 -24.66206 -23.56480 -22.92720 -22.26741 -21.39658 -19.24333 -18.83524 -18.45058 -17.51157 -17.02172 -16.59687 -16.49518 -16.17545 -15.63355 -15.42078 -14.99579 -14.85124 -14.71580 -14.43055 -14.27186 -13.83145 -13.67260 -13.27552 -12.86274 -12.75359 -12.70548 -12.29934 -12.15299 -11.90341 -11.80001 -11.77720 -11.60544 -11.33930 -11.32551 -10.80923 -10.76289 -10.17099 -9.95873 -9.72186 -8.29546 -6.33113 -0.00068 0.15216 0.57840 1.36248 1.38280 1.43567 1.49401 2.04393 2.35859 2.51845 3.06432 3.26859 3.39006 3.66728 3.78017 3.94838 4.08025 4.15625 4.18363 4.23339 4.40690 4.48702 4.64125 4.79338 4.87193 4.88431 5.03267 5.10804 5.26025 5.32660 5.33921 5.47931 5.55195 5.64911 5.73963 6.27008 6.28396 6.51885 6.75131 7.09958 7.31848 8.86767 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.002592 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.281984 B =10800.559179 C =11429.538444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.249 1.249 7 C -0.529 4.529 8 H 0.040 0.960 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.125 3.875 12 N -0.706 5.706 13 C 0.484 3.516 14 O -0.577 6.577 15 C 0.147 3.853 16 H 0.165 0.835 17 O -0.540 6.540 18 C -0.122 4.122 19 C -0.087 4.087 20 C -0.106 4.106 21 C -0.092 4.092 22 C -0.102 4.102 23 Br -0.055 7.055 24 C -0.093 4.093 25 H 0.266 0.734 26 H 0.018 0.982 27 H 0.019 0.981 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.416 0.584 33 H 0.388 0.612 34 H 0.167 0.833 35 H 0.165 0.835 36 H 0.148 0.852 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.743 -21.015 7.735 29.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.768 3.232 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.173 1.173 7 C -0.567 4.567 8 H 0.058 0.942 9 C -0.051 4.051 10 C -0.137 4.137 11 C 0.001 3.999 12 N -0.359 5.359 13 C 0.270 3.730 14 O -0.456 6.456 15 C 0.085 3.915 16 H 0.182 0.818 17 O -0.347 6.347 18 C -0.123 4.123 19 C -0.105 4.105 20 C -0.125 4.125 21 C -0.111 4.111 22 C -0.182 4.182 23 Br 0.031 6.969 24 C -0.113 4.113 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.253 0.747 33 H 0.239 0.761 34 H 0.184 0.816 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 19.424 -20.470 7.801 29.277 hybrid contribution -0.471 1.071 0.320 1.213 sum 18.952 -19.399 8.120 28.310 Atomic orbital electron populations 1.70048 1.08164 1.28102 1.52728 1.25954 0.95555 1.03320 0.94298 0.85738 0.79500 0.78746 0.79170 1.19239 1.21090 1.17299 1.21457 0.91835 0.93284 1.50119 0.94182 1.19470 0.94142 0.94783 0.96699 1.21471 0.91804 0.98080 1.02353 1.21331 0.94586 0.82652 1.01338 1.45947 1.06922 1.09466 1.73562 1.21931 0.82698 0.92841 0.75548 1.90715 1.56337 1.47274 1.51324 1.20786 0.83059 0.89987 0.97708 0.81821 1.86600 1.15851 1.78638 1.53575 1.20209 0.97986 1.00069 0.94075 1.21556 0.94735 0.93866 1.00335 1.21572 1.00085 0.99547 0.91288 1.21508 0.92907 0.96028 1.00682 1.21869 0.99690 1.04130 0.92467 1.96743 1.71863 1.96018 1.32291 1.20930 1.00100 0.98857 0.91373 0.92521 0.96340 0.96251 0.91298 0.91691 0.92733 0.92199 0.74743 0.76148 0.81559 0.81727 0.83453 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 2 C 0.01 0.33 5.47 84.66 0.46 0.79 16 3 Si 0.94 43.95 27.47 68.60 1.88 45.83 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.89 6.54 99.48 0.65 -10.23 16 7 C -0.53 -29.42 9.66 25.60 0.25 -29.17 16 8 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 9 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 10 C -0.10 -3.39 5.27 30.59 0.16 -3.23 16 11 C 0.12 3.75 5.67 86.38 0.49 4.24 16 12 N -0.71 -16.27 5.51 -463.07 -2.55 -18.82 16 13 C 0.48 11.91 7.15 87.66 0.63 12.54 16 14 O -0.58 -19.38 16.32 15.94 0.26 -19.12 16 15 C 0.15 2.51 3.62 29.10 0.11 2.62 16 16 H 0.16 1.81 8.00 -2.39 -0.02 1.79 16 17 O -0.54 -10.92 12.84 -129.99 -1.67 -12.59 16 18 C -0.12 -1.86 4.92 -19.87 -0.10 -1.96 16 19 C -0.09 -0.94 9.67 22.27 0.22 -0.72 16 20 C -0.11 -1.12 10.05 22.26 0.22 -0.90 16 21 C -0.09 -1.26 9.79 22.29 0.22 -1.04 16 22 C -0.10 -1.77 6.22 22.31 0.14 -1.63 16 23 Br -0.05 -0.96 33.70 -20.37 -0.69 -1.64 16 24 C -0.09 -1.65 9.06 22.29 0.20 -1.45 16 25 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 26 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 27 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 28 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.42 6.91 8.47 -92.71 -0.79 6.12 16 33 H 0.39 6.84 7.24 -74.06 -0.54 6.30 16 34 H 0.17 0.72 8.04 -2.91 -0.02 0.70 16 35 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 36 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 37 H 0.13 2.25 6.77 -2.91 -0.02 2.23 16 Total: -1.00 -73.20 339.43 0.38 -72.82 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -0.27 Total: 12.24 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 3.11 Total: -20.38 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -2.25 Total: -77.17 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -1.41 Total: -31.71 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Atomic # 35 Polarization: -0.96 SS G_CDS: -0.69 Total: -1.64 kcal Total: -73.20 0.38 -72.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900571707.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.876 kcal (2) G-P(sol) polarization free energy of solvation -73.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds