Wall clock time and date at job start Sat Apr 11 2020 06:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 117.00216 * 2 1 4 4 O 1.20836 * 119.99756 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00445 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47596 * 179.97438 * 5 3 2 7 7 C 1.36926 * 120.00250 * 270.00568 * 6 5 3 8 8 H 1.08005 * 120.00175 * 25.28907 * 7 6 5 9 9 C 1.38814 * 120.00074 * 205.29088 * 7 6 5 10 10 N 1.31621 * 120.00045 * 310.23678 * 9 7 6 11 11 Si 1.86797 * 120.00025 * 130.23351 * 9 7 6 12 12 H 1.48504 * 109.47135 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47185 * 120.00343 * 11 9 7 14 14 H 1.48496 * 109.47461 * 240.00393 * 11 9 7 15 15 C 1.46505 * 119.99422 * 89.99882 * 6 5 3 16 16 C 1.50704 * 109.47287 * 276.61590 * 15 6 5 17 17 C 1.38237 * 120.00739 * 266.86610 * 16 15 6 18 18 C 1.38215 * 120.01200 * 180.30378 * 17 16 15 19 19 C 1.38267 * 120.01804 * 359.71549 * 18 17 16 20 20 C 1.38196 * 120.01015 * 0.02592 * 19 18 17 21 21 C 1.50695 * 120.00571 * 179.97438 * 20 19 18 22 22 C 1.38299 * 120.00058 * 86.63296 * 16 15 6 23 23 Br 1.89101 * 120.01430 * 359.97438 * 22 16 15 24 24 H 1.09001 * 109.47508 * 300.00105 * 1 2 3 25 25 H 1.09002 * 109.47105 * 60.00191 * 1 2 3 26 26 H 1.09003 * 109.47254 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47072 * 60.00147 * 5 3 2 28 28 H 1.08998 * 109.47252 * 300.00159 * 5 3 2 29 29 H 0.97004 * 119.99559 * 179.97438 * 10 9 7 30 30 H 1.09005 * 109.46392 * 156.61891 * 15 6 5 31 31 H 1.08994 * 109.47004 * 36.61882 * 15 6 5 32 32 H 1.08005 * 119.99466 * 0.02562 * 17 16 15 33 33 H 1.08002 * 119.99085 * 179.70443 * 18 17 16 34 34 H 1.07999 * 119.99210 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.47080 * 269.98106 * 21 20 19 36 36 H 1.09005 * 109.47006 * 29.98083 * 21 20 19 37 37 H 1.09006 * 109.47244 * 149.98137 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1763 3.3356 -1.1863 8 1 3.6623 3.0050 -2.0768 9 6 5.0341 4.4254 -1.2443 10 7 4.9195 5.4005 -0.3677 11 14 6.3512 4.5079 -2.5663 12 1 6.2707 3.2966 -3.4216 13 1 6.1396 5.7177 -3.4010 14 1 7.6902 4.5753 -1.9277 15 6 4.1889 3.3829 1.2683 16 6 2.8662 3.8883 1.7843 17 6 2.4494 5.1705 1.4791 18 6 1.2392 5.6364 1.9575 19 6 0.4423 4.8182 2.7368 20 6 0.8557 3.5344 3.0380 21 6 -0.0126 2.6429 3.8878 22 6 2.0671 3.0677 2.5594 23 35 2.6333 1.3111 2.9712 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.9564 0.7806 -0.8892 28 1 3.9557 0.7809 0.8908 29 1 5.5193 6.1618 -0.4080 30 1 4.8632 4.2247 1.1110 31 1 4.6253 2.6987 1.9959 32 1 3.0715 5.8100 0.8703 33 1 0.9161 6.6398 1.7228 34 1 -0.5034 5.1825 3.1100 35 1 0.2468 2.7770 4.9379 36 1 -1.0600 2.9043 3.7360 37 1 0.1470 1.6026 3.6040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929789592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:33 Heat of formation + Delta-G solvation = -14.801034 kcal Electronic energy + Delta-G solvation = -23148.187240 eV Core-core repulsion = 19745.646693 eV Total energy + Delta-G solvation = -3402.540546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.52191 -38.65149 -36.12736 -35.03867 -32.42177 -32.05100 -31.34624 -29.24847 -27.99996 -26.29375 -26.10419 -25.63478 -22.41329 -20.96298 -20.25691 -19.53841 -17.10895 -16.71528 -15.84255 -15.68891 -15.43610 -15.10543 -14.59029 -14.11127 -13.83480 -13.56864 -13.32992 -12.97438 -12.61054 -12.45759 -12.25806 -11.96379 -11.79810 -11.52860 -11.47775 -11.13899 -11.04324 -10.70979 -10.57092 -10.30003 -10.13870 -10.09731 -10.00359 -9.80414 -9.52849 -9.21359 -8.19641 -7.84087 -7.77445 -7.20637 -6.31979 -3.21957 1.95270 2.16856 2.31730 3.29558 3.30576 3.45279 3.47142 3.60890 4.33657 4.49239 4.86486 5.32653 5.41559 5.48046 5.52087 5.59561 5.70977 5.73065 5.83003 5.86990 6.02652 6.10856 6.15909 6.24980 6.31876 6.37458 6.46630 6.68984 6.88419 7.04986 7.25158 7.29507 7.42050 7.60286 7.75203 7.85404 8.14808 8.78635 8.93235 9.58071 10.11071 10.77069 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.006751 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.665062 B = 4146.682276 C = 4894.468619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.375 6.375 3 C 0.414 3.586 4 O -0.485 6.485 5 C 0.156 3.844 6 N -0.546 5.546 7 C -0.289 4.289 8 H 0.081 0.919 9 C 0.049 3.951 10 N -0.843 5.843 11 Si 0.856 3.144 12 H -0.274 1.274 13 H -0.293 1.293 14 H -0.284 1.284 15 C 0.140 3.860 16 C -0.027 4.027 17 C -0.084 4.084 18 C -0.117 4.117 19 C -0.139 4.139 20 C -0.074 4.074 21 C -0.114 4.114 22 C -0.084 4.084 23 Br -0.079 7.079 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.262 0.738 30 H 0.134 0.866 31 H 0.037 0.963 32 H 0.158 0.842 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.860 -6.637 7.840 11.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.292 6.292 3 C 0.252 3.748 4 O -0.369 6.369 5 C 0.024 3.976 6 N -0.263 5.263 7 C -0.415 4.415 8 H 0.099 0.901 9 C -0.153 4.153 10 N -0.482 5.482 11 Si 0.682 3.318 12 H -0.199 1.199 13 H -0.221 1.221 14 H -0.210 1.210 15 C 0.015 3.985 16 C -0.032 4.032 17 C -0.103 4.103 18 C -0.136 4.136 19 C -0.158 4.158 20 C -0.076 4.076 21 C -0.171 4.171 22 C -0.163 4.163 23 Br 0.007 6.993 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.151 0.849 31 H 0.055 0.945 32 H 0.176 0.824 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.763 -6.806 8.020 11.994 hybrid contribution -0.268 0.669 -0.836 1.103 sum -6.031 -6.137 7.184 11.209 Atomic orbital electron populations 1.22961 0.79337 1.01863 1.01543 1.86591 1.21353 1.36043 1.85231 1.26757 0.94792 0.80984 0.72237 1.90650 1.66591 1.36030 1.43624 1.20789 0.85184 0.88475 1.03111 1.44486 1.74223 1.04911 1.02652 1.19017 1.21469 1.14885 0.86129 0.90133 1.24935 0.98823 0.94775 0.96759 1.70121 1.34153 1.05133 1.38776 0.86969 0.84434 0.77779 0.82605 1.19920 1.22068 1.21012 1.21483 0.92240 0.98452 0.86299 1.20839 0.98845 0.92605 0.90878 1.21625 0.95585 0.95897 0.97234 1.21222 0.95344 0.99166 0.97864 1.20670 0.99849 0.93574 1.01695 1.19450 0.93905 0.95149 0.99102 1.20842 0.98327 0.99219 0.98673 1.21525 0.98093 0.90636 1.06049 1.96429 1.90419 1.19032 1.93442 0.92949 0.93056 0.89631 0.89183 0.89419 0.92738 0.84906 0.94519 0.82422 0.86996 0.87091 0.91604 0.92102 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.56 101.05 1.07 1.64 16 2 O -0.38 -6.79 10.56 -39.24 -0.41 -7.21 16 3 C 0.41 8.61 5.43 36.00 0.20 8.80 16 4 O -0.48 -11.59 13.40 -18.76 -0.25 -11.84 16 5 C 0.16 3.18 5.59 -5.19 -0.03 3.15 16 6 N -0.55 -12.82 2.11 -175.98 -0.37 -13.19 16 7 C -0.29 -7.44 9.46 -15.06 -0.14 -7.58 16 8 H 0.08 2.16 8.06 -52.48 -0.42 1.74 16 9 C 0.05 1.24 4.96 -17.43 -0.09 1.15 16 10 N -0.84 -21.15 8.88 55.49 0.49 -20.65 16 11 Si 0.86 19.52 29.69 -169.99 -5.05 14.47 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 C 0.14 3.18 4.99 -5.19 -0.03 3.15 16 16 C -0.03 -0.60 4.26 -104.60 -0.45 -1.04 16 17 C -0.08 -1.86 9.63 -39.59 -0.38 -2.24 16 18 C -0.12 -2.27 10.05 -39.58 -0.40 -2.66 16 19 C -0.14 -2.49 9.70 -39.59 -0.38 -2.88 16 20 C -0.07 -1.37 5.88 -104.60 -0.62 -1.98 16 21 C -0.11 -1.69 9.55 36.00 0.34 -1.35 16 22 C -0.08 -1.68 4.38 -39.52 -0.17 -1.85 16 23 Br -0.08 -1.38 25.11 -68.01 -1.71 -3.08 16 24 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 25 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 26 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.09 1.72 8.04 -51.93 -0.42 1.30 16 28 H 0.09 1.63 6.13 -51.93 -0.32 1.32 16 29 H 0.26 6.28 8.31 -40.82 -0.34 5.94 16 30 H 0.13 3.28 4.76 -51.93 -0.25 3.03 16 31 H 0.04 0.78 6.66 -51.93 -0.35 0.43 16 32 H 0.16 3.75 5.98 -52.48 -0.31 3.44 16 33 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 37 H 0.07 1.02 6.65 -51.93 -0.35 0.68 16 LS Contribution 316.86 15.07 4.78 4.78 Total: -1.00 -28.05 316.86 -8.10 -36.15 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.50 Total: 4.26 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -1.07 Total: -3.68 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.12 Total: -33.84 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.67 Total: -19.05 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.05 Total: 14.47 kcal Atomic # 35 Polarization: -1.38 SS G_CDS: -1.71 Total: -3.08 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.05 -8.10 -36.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929789592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.346 kcal (2) G-P(sol) polarization free energy of solvation -28.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds