Wall clock time and date at job start Sat Apr 11 2020 06:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00114 * 2 1 4 4 H 1.48493 * 109.46697 * 269.99715 * 3 2 1 5 5 H 1.48498 * 109.46982 * 29.99186 * 3 2 1 6 6 H 1.48497 * 109.47029 * 149.99407 * 3 2 1 7 7 C 1.37870 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00484 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00154 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47010 * 299.99863 * 9 7 2 11 11 O 1.42899 * 109.47062 * 59.99592 * 9 7 2 12 12 C 1.52999 * 109.47490 * 180.02562 * 9 7 2 13 13 N 1.46901 * 109.47311 * 176.89835 * 12 9 7 14 14 C 1.46040 * 110.99997 * 158.15356 * 13 12 9 15 15 C 1.51348 * 113.61531 * 193.81944 * 14 13 12 16 16 O 1.43290 * 110.76338 * 294.80143 * 15 14 13 17 17 C 1.36132 * 115.33350 * 85.57002 * 16 15 14 18 18 C 1.38861 * 120.16959 * 109.95019 * 17 16 15 19 19 Br 1.89098 * 120.17372 * 2.23787 * 18 17 16 20 20 C 1.38262 * 119.65319 * 182.21248 * 18 17 16 21 21 C 1.38297 * 120.20396 * 0.02620 * 20 18 17 22 22 C 1.38384 * 120.11397 * 359.64543 * 21 20 18 23 23 C 1.37998 * 119.68223 * 359.97438 * 22 21 20 24 24 C 1.46714 * 110.99916 * 284.14683 * 13 12 9 25 25 H 0.97001 * 120.00017 * 0.02562 * 1 2 3 26 26 H 0.96700 * 113.99747 * 60.00658 * 11 9 7 27 27 H 1.08996 * 109.47208 * 56.89979 * 12 9 7 28 28 H 1.09002 * 109.46988 * 296.89529 * 12 9 7 29 29 H 1.08997 * 108.65359 * 314.88435 * 14 13 12 30 30 H 1.08993 * 108.65613 * 72.75457 * 14 13 12 31 31 H 1.09005 * 109.22202 * 55.13088 * 15 14 13 32 32 H 1.08996 * 109.22396 * 174.51072 * 15 14 13 33 33 H 1.07998 * 119.90140 * 179.75626 * 20 18 17 34 34 H 1.07993 * 119.93925 * 179.61778 * 21 20 18 35 35 H 1.08000 * 120.15318 * 179.97438 * 22 21 20 36 36 H 1.09004 * 109.58922 * 30.82574 * 24 13 12 37 37 H 1.08996 * 109.70094 * 270.47486 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4299 -2.5750 -1.1665 12 6 2.2452 -3.6621 0.0018 13 7 1.5122 -4.9329 0.0768 14 6 2.3261 -6.0369 -0.4248 15 6 1.5371 -7.3016 -0.6869 16 8 1.0096 -7.8334 0.5346 17 6 -0.1840 -7.3114 0.9298 18 6 -1.3353 -8.0861 0.8798 19 35 -1.2431 -9.8908 0.3226 20 6 -2.5494 -7.5313 1.2402 21 6 -2.6175 -6.2115 1.6478 22 6 -1.4688 -5.4419 1.7038 23 6 -0.2559 -5.9980 1.3517 24 6 1.0137 -5.1730 1.4356 25 1 -0.4850 0.8401 -0.0004 26 1 0.9223 -2.5299 -1.9975 27 1 2.9072 -3.5732 0.8632 28 1 2.8354 -3.6365 -0.9143 29 1 2.8027 -5.7245 -1.3540 30 1 3.1042 -6.2566 0.3061 31 1 0.7140 -7.0770 -1.3654 32 1 2.1898 -8.0428 -1.1479 33 1 -3.4479 -8.1290 1.1991 34 1 -3.5690 -5.7806 1.9224 35 1 -1.5213 -4.4111 2.0216 36 1 0.7989 -4.2202 1.9197 37 1 1.7637 -5.7146 2.0118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930272154.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:35 Heat of formation + Delta-G solvation = -46.347426 kcal Electronic energy + Delta-G solvation = -22133.698356 eV Core-core repulsion = 18729.789855 eV Total energy + Delta-G solvation = -3403.908501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45537 -37.67191 -36.97372 -34.88216 -32.44623 -32.10435 -31.45989 -29.80457 -28.82622 -27.48279 -26.03539 -24.26282 -22.32284 -21.45844 -21.07935 -20.09493 -17.86090 -17.11239 -16.34581 -15.78946 -15.33964 -15.07484 -14.81018 -14.57163 -14.15912 -13.89983 -13.68816 -13.57926 -13.28158 -12.65605 -12.57266 -12.25940 -12.00744 -11.48228 -11.27494 -11.04397 -10.97739 -10.91907 -10.81680 -10.69971 -10.60411 -10.20859 -10.11812 -9.97121 -9.08986 -8.64986 -8.59646 -8.45381 -8.21734 -7.68399 -6.03969 -4.22837 1.11306 1.25647 1.67065 3.24721 3.32186 3.33979 3.37019 3.88153 4.27117 4.44051 4.77414 4.96306 5.17352 5.18895 5.23656 5.27046 5.31444 5.35227 5.44229 5.55618 5.78748 5.87498 5.90389 5.97292 6.03984 6.11599 6.22826 6.40055 6.49739 6.60531 6.70103 6.72981 7.36257 7.47205 7.49081 7.72742 7.83960 8.15886 8.81122 9.42965 9.59100 10.99922 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.026652 B = 0.003148 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.339024 B = 8891.488276 C = 9550.487145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.082 3.918 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.577 4.577 8 H 0.054 0.946 9 C 0.241 3.759 10 H 0.053 0.947 11 O -0.553 6.553 12 C 0.035 3.965 13 N -0.533 5.533 14 C 0.028 3.972 15 C 0.070 3.930 16 O -0.322 6.322 17 C 0.130 3.870 18 C -0.109 4.109 19 Br -0.051 7.051 20 C -0.087 4.087 21 C -0.123 4.123 22 C -0.068 4.068 23 C -0.085 4.085 24 C 0.099 3.901 25 H 0.260 0.740 26 H 0.341 0.659 27 H 0.032 0.968 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.033 0.967 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.092 0.908 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 -18.498 1.532 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.615 4.615 8 H 0.072 0.928 9 C 0.183 3.817 10 H 0.071 0.929 11 O -0.354 6.354 12 C -0.092 4.092 13 N -0.257 5.257 14 C -0.101 4.101 15 C -0.005 4.005 16 O -0.238 6.238 17 C 0.084 3.916 18 C -0.189 4.189 19 Br 0.035 6.965 20 C -0.107 4.107 21 C -0.142 4.142 22 C -0.087 4.087 23 C -0.087 4.087 24 C -0.029 4.029 25 H 0.070 0.930 26 H 0.184 0.816 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.156 0.844 36 H 0.110 0.890 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.327 -19.223 1.568 19.571 hybrid contribution 1.619 1.532 0.118 2.232 sum -1.708 -17.691 1.687 17.853 Atomic orbital electron populations 1.70075 1.05890 1.26421 1.46871 1.25000 0.94665 0.99018 0.93795 0.86695 0.79965 0.83604 0.78238 1.20516 1.21098 1.19892 1.21650 0.93136 0.91630 1.55103 0.92772 1.19288 0.87725 0.88231 0.86494 0.92919 1.86579 1.37697 1.96276 1.14891 1.23149 0.96988 0.89126 0.99913 1.60974 1.40352 1.02403 1.21956 1.22181 0.94957 0.91983 1.00950 1.22686 0.98199 0.94939 0.84674 1.86321 1.33086 1.63037 1.41375 1.18143 0.84833 0.91072 0.97586 1.21925 0.95054 0.92296 1.09642 1.96628 1.99133 1.11057 1.89729 1.20952 0.95573 0.95668 0.98459 1.21189 0.98993 0.93302 1.00733 1.21202 0.91052 1.00136 0.96304 1.20292 0.96585 0.92745 0.99058 1.21167 0.92472 0.99011 0.90227 0.92977 0.81627 0.94988 0.91785 0.89851 0.94876 0.91498 0.88098 0.85001 0.84924 0.84446 0.88974 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.70 12.84 55.43 0.71 -23.99 16 2 C 0.08 2.22 5.40 -17.82 -0.10 2.13 16 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.58 -15.29 8.76 -34.44 -0.30 -15.59 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.24 5.83 2.88 -27.88 -0.08 5.75 16 10 H 0.05 1.40 6.79 -51.93 -0.35 1.05 16 11 O -0.55 -13.98 12.65 -35.23 -0.45 -14.43 16 12 C 0.03 0.68 4.52 -3.82 -0.02 0.67 16 13 N -0.53 -9.32 4.21 -237.43 -1.00 -10.32 16 14 C 0.03 0.40 5.20 -5.12 -0.03 0.38 16 15 C 0.07 0.93 6.63 36.32 0.24 1.17 16 16 O -0.32 -4.85 9.40 -20.16 -0.19 -5.04 16 17 C 0.13 2.01 5.63 -39.39 -0.22 1.79 16 18 C -0.11 -1.54 6.24 -39.34 -0.25 -1.79 16 19 Br -0.05 -0.63 33.19 -68.01 -2.26 -2.89 16 20 C -0.09 -1.08 9.78 -39.55 -0.39 -1.47 16 21 C -0.12 -1.56 10.05 -39.51 -0.40 -1.96 16 22 C -0.07 -1.01 9.70 -39.62 -0.38 -1.40 16 23 C -0.08 -1.36 5.45 -104.28 -0.57 -1.93 16 24 C 0.10 1.66 5.02 -4.61 -0.02 1.64 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.34 7.76 9.04 45.56 0.41 8.17 16 27 H 0.03 0.62 8.00 -51.93 -0.42 0.20 16 28 H 0.06 1.20 7.58 -51.93 -0.39 0.81 16 29 H 0.08 1.11 7.63 -51.93 -0.40 0.71 16 30 H 0.03 0.47 7.90 -51.93 -0.41 0.06 16 31 H 0.07 0.95 7.91 -51.93 -0.41 0.54 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.14 2.02 7.99 -52.49 -0.42 1.60 16 36 H 0.09 1.64 6.25 -51.93 -0.32 1.31 16 37 H 0.05 0.78 7.77 -51.93 -0.40 0.37 16 LS Contribution 325.58 15.07 4.91 4.91 Total: -1.00 -30.07 325.58 -9.73 -39.80 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -3.92 Total: 6.93 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -2.51 Total: -10.61 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: -0.29 Total: -34.31 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.64 Total: -19.47 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -2.26 Total: -2.89 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.07 -9.73 -39.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930272154.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.546 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds