Wall clock time and date at job start Sat Apr 11 2020 06:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00114 * 2 1 4 4 H 1.48493 * 109.46697 * 269.99715 * 3 2 1 5 5 H 1.48498 * 109.46982 * 29.99186 * 3 2 1 6 6 H 1.48497 * 109.47029 * 149.99407 * 3 2 1 7 7 C 1.37870 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00484 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00154 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47010 * 299.99863 * 9 7 2 11 11 O 1.42899 * 109.47062 * 59.99592 * 9 7 2 12 12 C 1.52999 * 109.47490 * 180.02562 * 9 7 2 13 13 N 1.46901 * 109.47311 * 176.89835 * 12 9 7 14 14 C 1.46040 * 110.99997 * 158.15356 * 13 12 9 15 15 C 1.51348 * 113.61531 * 193.81944 * 14 13 12 16 16 O 1.43290 * 110.76338 * 294.80143 * 15 14 13 17 17 C 1.36132 * 115.33350 * 85.57002 * 16 15 14 18 18 C 1.38861 * 120.16959 * 109.95019 * 17 16 15 19 19 Br 1.89098 * 120.17372 * 2.23787 * 18 17 16 20 20 C 1.38262 * 119.65319 * 182.21248 * 18 17 16 21 21 C 1.38297 * 120.20396 * 0.02620 * 20 18 17 22 22 C 1.38384 * 120.11397 * 359.64543 * 21 20 18 23 23 C 1.37998 * 119.68223 * 359.97438 * 22 21 20 24 24 C 1.46714 * 110.99916 * 284.14683 * 13 12 9 25 25 H 0.97001 * 120.00017 * 0.02562 * 1 2 3 26 26 H 0.96700 * 113.99747 * 60.00658 * 11 9 7 27 27 H 1.08996 * 109.47208 * 56.89979 * 12 9 7 28 28 H 1.09002 * 109.46988 * 296.89529 * 12 9 7 29 29 H 1.08997 * 108.65359 * 314.88435 * 14 13 12 30 30 H 1.08993 * 108.65613 * 72.75457 * 14 13 12 31 31 H 1.09005 * 109.22202 * 55.13088 * 15 14 13 32 32 H 1.08996 * 109.22396 * 174.51072 * 15 14 13 33 33 H 1.07998 * 119.90140 * 179.75626 * 20 18 17 34 34 H 1.07993 * 119.93925 * 179.61778 * 21 20 18 35 35 H 1.08000 * 120.15318 * 179.97438 * 22 21 20 36 36 H 1.09004 * 109.58922 * 30.82574 * 24 13 12 37 37 H 1.08996 * 109.70094 * 270.47486 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4299 -2.5750 -1.1665 12 6 2.2452 -3.6621 0.0018 13 7 1.5122 -4.9329 0.0768 14 6 2.3261 -6.0369 -0.4248 15 6 1.5371 -7.3016 -0.6869 16 8 1.0096 -7.8334 0.5346 17 6 -0.1840 -7.3114 0.9298 18 6 -1.3353 -8.0861 0.8798 19 35 -1.2431 -9.8908 0.3226 20 6 -2.5494 -7.5313 1.2402 21 6 -2.6175 -6.2115 1.6478 22 6 -1.4688 -5.4419 1.7038 23 6 -0.2559 -5.9980 1.3517 24 6 1.0137 -5.1730 1.4356 25 1 -0.4850 0.8401 -0.0004 26 1 0.9223 -2.5299 -1.9975 27 1 2.9072 -3.5732 0.8632 28 1 2.8354 -3.6365 -0.9143 29 1 2.8027 -5.7245 -1.3540 30 1 3.1042 -6.2566 0.3061 31 1 0.7140 -7.0770 -1.3654 32 1 2.1898 -8.0428 -1.1479 33 1 -3.4479 -8.1290 1.1991 34 1 -3.5690 -5.7806 1.9224 35 1 -1.5213 -4.4111 2.0216 36 1 0.7989 -4.2202 1.9197 37 1 1.7637 -5.7146 2.0118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930272154.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:35 Heat of formation + Delta-G solvation = -66.894684 kcal Electronic energy + Delta-G solvation = -22134.589352 eV Core-core repulsion = 18729.789855 eV Total energy + Delta-G solvation = -3404.799497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.59772 -38.94796 -38.32074 -36.61680 -34.19716 -33.55611 -32.55867 -31.23365 -30.00072 -28.98770 -27.44314 -25.90046 -23.54314 -22.64067 -22.47204 -21.62507 -19.09531 -18.92551 -17.57660 -17.01436 -16.67592 -16.49586 -16.37592 -16.22107 -15.48452 -15.35720 -15.23395 -14.85570 -14.55542 -14.34699 -13.76260 -13.41598 -13.30777 -13.02482 -12.84977 -12.82173 -12.66070 -12.30667 -12.21252 -12.04562 -11.89741 -11.76197 -11.23510 -11.15393 -10.98288 -10.68848 -10.11444 -9.74712 -9.53497 -9.13550 -8.11360 -6.37216 0.01590 0.15962 0.61896 1.41322 1.42192 1.52263 2.27933 2.39498 2.75065 3.09386 3.15278 3.64219 3.80896 3.99816 4.05894 4.17879 4.22067 4.30702 4.32868 4.35566 4.43927 4.51169 4.62649 4.69113 4.73256 4.81916 4.90006 5.02052 5.08189 5.29895 5.47956 5.62015 5.63699 5.76522 5.95531 6.16469 6.23771 6.33499 6.76207 7.37350 7.65553 8.92666 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.026652 B = 0.003148 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.339024 B = 8891.488276 C = 9550.487145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.030 3.970 3 Si 0.956 3.044 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.589 4.589 8 H 0.059 0.941 9 C 0.243 3.757 10 H 0.020 0.980 11 O -0.569 6.569 12 C 0.053 3.947 13 N -0.544 5.544 14 C 0.027 3.973 15 C 0.072 3.928 16 O -0.329 6.329 17 C 0.118 3.882 18 C -0.120 4.120 19 Br -0.034 7.034 20 C -0.080 4.080 21 C -0.117 4.117 22 C -0.086 4.086 23 C -0.105 4.105 24 C 0.104 3.896 25 H 0.260 0.740 26 H 0.351 0.649 27 H 0.030 0.970 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.038 0.962 31 H 0.056 0.944 32 H 0.135 0.865 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.127 0.873 36 H 0.070 0.930 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 -19.617 1.011 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.173 4.173 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.627 4.627 8 H 0.077 0.923 9 C 0.185 3.815 10 H 0.037 0.963 11 O -0.372 6.372 12 C -0.074 4.074 13 N -0.268 5.268 14 C -0.101 4.101 15 C -0.002 4.002 16 O -0.245 6.245 17 C 0.071 3.929 18 C -0.200 4.200 19 Br 0.051 6.949 20 C -0.100 4.100 21 C -0.136 4.136 22 C -0.105 4.105 23 C -0.107 4.107 24 C -0.024 4.024 25 H 0.069 0.931 26 H 0.195 0.805 27 H 0.048 0.952 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.153 0.847 33 H 0.179 0.821 34 H 0.179 0.821 35 H 0.145 0.855 36 H 0.088 0.912 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.955 -20.360 1.045 20.600 hybrid contribution 1.468 1.801 0.277 2.340 sum -1.487 -18.559 1.322 18.666 Atomic orbital electron populations 1.70214 1.07567 1.27239 1.48354 1.25827 0.95407 1.02652 0.93422 0.85621 0.78757 0.79152 0.78401 1.19881 1.21024 1.19014 1.22056 0.93528 0.92838 1.54310 0.92324 1.19125 0.87704 0.89669 0.85021 0.96269 1.86526 1.38645 1.96429 1.15642 1.22733 0.95545 0.88809 1.00344 1.60886 1.40859 1.02619 1.22485 1.22285 0.94887 0.91428 1.01522 1.22818 0.98166 0.95252 0.83994 1.86308 1.33133 1.63050 1.42042 1.18241 0.85527 0.91001 0.98102 1.22146 0.95116 0.93165 1.09541 1.96632 1.99144 1.09542 1.89569 1.21321 0.96114 0.95672 0.96858 1.21489 0.99251 0.93289 0.99539 1.21286 0.91861 1.00136 0.97235 1.20280 0.96415 0.93324 1.00694 1.21063 0.93298 0.98161 0.89874 0.93060 0.80538 0.95155 0.90644 0.88401 0.94337 0.92588 0.84704 0.82092 0.82122 0.85513 0.91163 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.74 12.84 21.44 0.28 -52.46 16 2 C 0.03 1.62 5.40 84.65 0.46 2.08 16 3 Si 0.96 42.50 29.54 68.60 2.03 44.53 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.59 -31.50 8.76 25.60 0.22 -31.28 16 8 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.24 12.07 2.88 29.85 0.09 12.15 16 10 H 0.02 1.09 6.79 -2.38 -0.02 1.07 16 11 O -0.57 -29.40 12.65 -148.98 -1.88 -31.28 16 12 C 0.05 2.08 4.52 86.30 0.39 2.47 16 13 N -0.54 -19.09 4.21 -905.10 -3.81 -22.90 16 14 C 0.03 0.73 5.20 85.93 0.45 1.18 16 15 C 0.07 1.80 6.63 71.44 0.47 2.27 16 16 O -0.33 -9.51 9.40 -95.05 -0.89 -10.40 16 17 C 0.12 3.56 5.63 22.40 0.13 3.69 16 18 C -0.12 -3.19 6.24 22.42 0.14 -3.05 16 19 Br -0.03 -0.78 33.19 -20.37 -0.68 -1.46 16 20 C -0.08 -1.84 9.78 22.29 0.22 -1.62 16 21 C -0.12 -2.82 10.05 22.32 0.22 -2.60 16 22 C -0.09 -2.62 9.70 22.25 0.22 -2.40 16 23 C -0.11 -3.42 5.45 -19.65 -0.11 -3.53 16 24 C 0.10 3.59 5.02 85.89 0.43 4.03 16 25 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 26 H 0.35 16.11 9.04 -74.06 -0.67 15.44 16 27 H 0.03 1.18 8.00 -2.39 -0.02 1.17 16 28 H 0.08 2.76 7.58 -2.39 -0.02 2.74 16 29 H 0.10 2.39 7.63 -2.39 -0.02 2.37 16 30 H 0.04 1.03 7.90 -2.39 -0.02 1.01 16 31 H 0.06 1.52 7.91 -2.38 -0.02 1.51 16 32 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.13 4.01 7.99 -2.91 -0.02 3.98 16 36 H 0.07 2.68 6.25 -2.39 -0.01 2.67 16 37 H 0.05 1.70 7.77 -2.39 -0.02 1.68 16 Total: -1.00 -64.61 325.58 -1.21 -65.82 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.43 Total: 24.76 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 3.33 Total: -16.61 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: -3.54 Total: -75.36 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -2.78 Total: -41.69 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 35 Polarization: -0.78 SS G_CDS: -0.68 Total: -1.46 kcal Total: -64.61 -1.21 -65.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930272154.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.072 kcal (2) G-P(sol) polarization free energy of solvation -64.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds