Wall clock time and date at job start Sat Apr 11 2020 06:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86793 * 120.00167 * 2 1 4 4 H 1.48504 * 109.47405 * 270.00380 * 3 2 1 5 5 H 1.48501 * 109.47381 * 30.00120 * 3 2 1 6 6 H 1.48496 * 109.47202 * 150.00357 * 3 2 1 7 7 C 1.37883 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00101 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99893 * 180.02562 * 7 2 1 10 10 H 1.09009 * 109.46901 * 299.99309 * 9 7 2 11 11 O 1.42899 * 109.47320 * 59.99137 * 9 7 2 12 12 C 1.53001 * 109.47165 * 179.97438 * 9 7 2 13 13 N 1.46903 * 109.47075 * 179.97438 * 12 9 7 14 14 C 1.46897 * 110.99917 * 185.28540 * 13 12 9 15 15 H 1.09001 * 109.43664 * 33.88902 * 14 13 12 16 16 C 1.53070 * 109.43941 * 273.97344 * 14 13 12 17 17 C 1.53400 * 108.29585 * 191.74722 * 16 14 13 18 18 O 1.42839 * 108.36928 * 64.73619 * 17 16 14 19 19 C 1.35854 * 117.85651 * 310.85746 * 18 17 16 20 20 C 1.39227 * 118.49290 * 197.02398 * 19 18 17 21 21 Br 1.89097 * 119.90263 * 0.16127 * 20 19 18 22 22 C 1.38044 * 120.19667 * 180.18306 * 20 19 18 23 23 C 1.38286 * 119.95120 * 0.02562 * 22 20 19 24 24 C 1.38099 * 119.98600 * 359.91213 * 23 22 20 25 25 C 1.38338 * 121.81749 * 17.07692 * 19 18 17 26 26 H 0.96998 * 120.00176 * 359.97438 * 1 2 3 27 27 H 0.96701 * 113.99883 * 60.00639 * 11 9 7 28 28 H 1.09001 * 109.47032 * 60.00035 * 12 9 7 29 29 H 1.08995 * 109.46852 * 299.99521 * 12 9 7 30 30 H 1.00895 * 111.00112 * 61.33085 * 13 12 9 31 31 H 1.09005 * 109.69657 * 311.44644 * 16 14 13 32 32 H 1.09003 * 109.70193 * 72.04184 * 16 14 13 33 33 H 1.09001 * 109.68682 * 184.45806 * 17 16 14 34 34 H 1.08999 * 109.68472 * 305.01724 * 17 16 14 35 35 H 1.08002 * 120.02375 * 180.02562 * 22 20 19 36 36 H 1.07996 * 120.00596 * 179.97438 * 23 22 20 37 37 H 1.08000 * 119.82597 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8751 -0.6798 -0.8896 11 8 3.9874 -0.5211 1.1673 12 6 4.0215 -2.6366 -0.0001 13 7 5.4905 -2.6366 -0.0001 14 6 6.0169 -4.0022 -0.1266 15 1 5.3503 -4.5910 -0.7567 16 6 6.1061 -4.6442 1.2601 17 6 6.9229 -5.9371 1.1405 18 8 8.2571 -5.5935 0.7634 19 6 8.4219 -4.7450 -0.2847 20 6 9.6719 -4.6770 -0.8940 21 35 11.0897 -5.7558 -0.2599 22 6 9.8796 -3.8241 -1.9594 23 6 8.8438 -3.0341 -2.4234 24 6 7.6024 -3.1002 -1.8219 25 6 7.3872 -3.9555 -0.7537 26 1 -0.4850 0.8400 0.0004 27 1 3.7018 -0.9251 1.9982 28 1 3.6585 -3.1503 -0.8903 29 1 3.6578 -3.1506 0.8897 30 1 5.8521 -2.1848 0.8264 31 1 6.5998 -3.9602 1.9505 32 1 5.1046 -4.8745 1.6236 33 1 6.9342 -6.4544 2.0999 34 1 6.4810 -6.5816 0.3806 35 1 10.8503 -3.7739 -2.4302 36 1 9.0054 -2.3662 -3.2565 37 1 6.7954 -2.4817 -2.1861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930330768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:37 Heat of formation + Delta-G solvation = -56.185253 kcal Electronic energy + Delta-G solvation = -21615.813152 eV Core-core repulsion = 18211.478051 eV Total energy + Delta-G solvation = -3404.335101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.91744 -37.67762 -37.29499 -35.50878 -32.37068 -32.29761 -31.30925 -30.78148 -28.97763 -28.28640 -25.29779 -24.05858 -23.34651 -21.95773 -20.66928 -20.12367 -17.91951 -17.40593 -16.83010 -16.22303 -15.68807 -15.02260 -14.90035 -14.67441 -14.35248 -14.09250 -13.97023 -13.66480 -13.52295 -12.95235 -12.76219 -12.60809 -12.19835 -11.81479 -11.65566 -11.63506 -11.22000 -11.01783 -10.89932 -10.81956 -10.64150 -10.37953 -10.26915 -10.04742 -9.10442 -8.77144 -8.67731 -8.38326 -8.28677 -8.07637 -6.17665 -4.29727 1.04515 1.21180 1.60031 3.05642 3.37362 3.46817 3.51372 3.72863 4.27600 4.48124 4.50246 4.56861 4.68425 4.89518 4.94622 5.11465 5.16345 5.21382 5.25573 5.39260 5.41090 5.62158 5.68389 5.77981 5.86925 5.93999 6.03092 6.04734 6.30803 6.45017 6.56111 6.59074 7.15383 7.17544 7.36002 7.52750 7.74206 8.22429 8.76823 8.95496 9.46913 10.92836 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.002752 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.538758 B =10173.180416 C =10732.340683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.084 3.916 3 Si 0.874 3.126 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.217 1.217 7 C -0.567 4.567 8 H 0.070 0.930 9 C 0.198 3.802 10 H 0.063 0.937 11 O -0.581 6.581 12 C 0.044 3.956 13 N -0.676 5.676 14 C 0.130 3.870 15 H 0.090 0.910 16 C -0.190 4.190 17 C 0.065 3.935 18 O -0.305 6.305 19 C 0.159 3.841 20 C -0.131 4.131 21 Br -0.049 7.049 22 C -0.062 4.062 23 C -0.156 4.156 24 C -0.034 4.034 25 C -0.144 4.144 26 H 0.265 0.735 27 H 0.352 0.648 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.347 0.653 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.444 -12.978 -0.776 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.121 4.121 3 Si 0.700 3.300 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.139 1.139 7 C -0.604 4.604 8 H 0.089 0.911 9 C 0.141 3.859 10 H 0.081 0.919 11 O -0.386 6.386 12 C -0.084 4.084 13 N -0.306 5.306 14 C 0.019 3.981 15 H 0.108 0.892 16 C -0.229 4.229 17 C -0.010 4.010 18 O -0.219 6.219 19 C 0.111 3.889 20 C -0.211 4.211 21 Br 0.036 6.964 22 C -0.082 4.082 23 C -0.175 4.175 24 C -0.053 4.053 25 C -0.146 4.146 26 H 0.075 0.925 27 H 0.198 0.802 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.167 0.833 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.085 0.915 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 22.266 -12.841 -1.535 25.749 hybrid contribution -0.906 0.373 1.029 1.421 sum 21.360 -12.468 -0.505 24.738 Atomic orbital electron populations 1.69953 1.06836 1.27561 1.48626 1.25001 0.94618 1.00075 0.92414 0.86984 0.82943 0.81623 0.78442 1.21358 1.22363 1.13933 1.21482 0.89841 0.94777 1.54341 0.91138 1.19802 0.93268 0.87104 0.85760 0.91948 1.86716 1.77724 1.57810 1.16351 1.22695 0.84655 1.00944 1.00134 1.60508 1.09357 1.14025 1.46748 1.20333 0.92102 0.91549 0.94079 0.89184 1.23029 1.02080 0.98318 0.99516 1.22979 0.80287 0.96336 1.01439 1.86075 1.29707 1.60591 1.45497 1.18339 0.92368 0.90597 0.87589 1.21117 0.92372 1.05328 1.02261 1.96637 1.43597 1.67632 1.88565 1.20908 0.99781 0.93763 0.93717 1.21106 0.93030 1.01305 1.02026 1.21201 0.97230 0.94527 0.92351 1.19866 0.95228 0.99686 0.99858 0.92531 0.80241 0.91062 0.95587 0.83320 0.90125 0.89431 0.87336 0.91548 0.84872 0.85077 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.96 55.43 0.77 -25.99 16 2 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 3 Si 0.87 21.45 26.99 -169.99 -4.59 16.86 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.22 -5.19 5.31 56.52 0.30 -4.89 16 7 C -0.57 -15.11 9.34 -34.44 -0.32 -15.44 16 8 H 0.07 2.03 7.99 -52.49 -0.42 1.61 16 9 C 0.20 4.34 2.58 -27.88 -0.07 4.27 16 10 H 0.06 1.46 7.57 -51.92 -0.39 1.06 16 11 O -0.58 -12.27 9.58 -35.23 -0.34 -12.60 16 12 C 0.04 0.78 5.16 -3.82 -0.02 0.76 16 13 N -0.68 -10.08 5.43 -107.88 -0.59 -10.66 16 14 C 0.13 1.64 2.60 -68.79 -0.18 1.46 16 15 H 0.09 1.15 7.69 -51.93 -0.40 0.75 16 16 C -0.19 -2.05 5.54 -26.49 -0.15 -2.20 16 17 C 0.07 0.64 7.03 37.36 0.26 0.90 16 18 O -0.31 -3.78 9.51 -19.28 -0.18 -3.96 16 19 C 0.16 2.06 6.47 -39.18 -0.25 1.81 16 20 C -0.13 -1.61 6.24 -39.29 -0.25 -1.86 16 21 Br -0.05 -0.56 33.05 -68.01 -2.25 -2.80 16 22 C -0.06 -0.67 9.77 -39.63 -0.39 -1.06 16 23 C -0.16 -1.69 10.04 -39.61 -0.40 -2.09 16 24 C -0.03 -0.43 9.27 -39.53 -0.37 -0.80 16 25 C -0.14 -1.86 5.56 -104.44 -0.58 -2.44 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.35 6.55 9.04 45.56 0.41 6.96 16 28 H 0.07 1.28 7.92 -51.93 -0.41 0.87 16 29 H 0.03 0.45 8.01 -51.93 -0.42 0.03 16 30 H 0.35 5.27 7.83 -39.29 -0.31 4.97 16 31 H 0.08 0.92 7.90 -51.93 -0.41 0.51 16 32 H 0.09 0.90 8.02 -51.93 -0.42 0.48 16 33 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.14 1.85 7.70 -52.49 -0.40 1.44 16 LS Contribution 323.49 15.07 4.87 4.87 Total: -1.00 -30.21 323.49 -9.19 -39.40 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -4.09 Total: 9.31 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -2.80 Total: -14.42 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.19 Total: -36.66 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.52 Total: -16.57 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.59 Total: 16.86 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.25 Total: -2.80 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.21 -9.19 -39.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930330768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.781 kcal (2) G-P(sol) polarization free energy of solvation -30.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds