Wall clock time and date at job start Sat Apr 11 2020 06:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86793 * 120.00167 * 2 1 4 4 H 1.48504 * 109.47405 * 270.00380 * 3 2 1 5 5 H 1.48501 * 109.47381 * 30.00120 * 3 2 1 6 6 H 1.48496 * 109.47202 * 150.00357 * 3 2 1 7 7 C 1.37883 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00101 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99893 * 180.02562 * 7 2 1 10 10 H 1.09009 * 109.46901 * 299.99309 * 9 7 2 11 11 O 1.42899 * 109.47320 * 59.99137 * 9 7 2 12 12 C 1.53001 * 109.47165 * 179.97438 * 9 7 2 13 13 N 1.46903 * 109.47075 * 179.97438 * 12 9 7 14 14 C 1.46897 * 110.99917 * 185.28540 * 13 12 9 15 15 H 1.09001 * 109.43664 * 33.88902 * 14 13 12 16 16 C 1.53070 * 109.43941 * 273.97344 * 14 13 12 17 17 C 1.53400 * 108.29585 * 191.74722 * 16 14 13 18 18 O 1.42839 * 108.36928 * 64.73619 * 17 16 14 19 19 C 1.35854 * 117.85651 * 310.85746 * 18 17 16 20 20 C 1.39227 * 118.49290 * 197.02398 * 19 18 17 21 21 Br 1.89097 * 119.90263 * 0.16127 * 20 19 18 22 22 C 1.38044 * 120.19667 * 180.18306 * 20 19 18 23 23 C 1.38286 * 119.95120 * 0.02562 * 22 20 19 24 24 C 1.38099 * 119.98600 * 359.91213 * 23 22 20 25 25 C 1.38338 * 121.81749 * 17.07692 * 19 18 17 26 26 H 0.96998 * 120.00176 * 359.97438 * 1 2 3 27 27 H 0.96701 * 113.99883 * 60.00639 * 11 9 7 28 28 H 1.09001 * 109.47032 * 60.00035 * 12 9 7 29 29 H 1.08995 * 109.46852 * 299.99521 * 12 9 7 30 30 H 1.00895 * 111.00112 * 61.33085 * 13 12 9 31 31 H 1.09005 * 109.69657 * 311.44644 * 16 14 13 32 32 H 1.09003 * 109.70193 * 72.04184 * 16 14 13 33 33 H 1.09001 * 109.68682 * 184.45806 * 17 16 14 34 34 H 1.08999 * 109.68472 * 305.01724 * 17 16 14 35 35 H 1.08002 * 120.02375 * 180.02562 * 22 20 19 36 36 H 1.07996 * 120.00596 * 179.97438 * 23 22 20 37 37 H 1.08000 * 119.82597 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8751 -0.6798 -0.8896 11 8 3.9874 -0.5211 1.1673 12 6 4.0215 -2.6366 -0.0001 13 7 5.4905 -2.6366 -0.0001 14 6 6.0169 -4.0022 -0.1266 15 1 5.3503 -4.5910 -0.7567 16 6 6.1061 -4.6442 1.2601 17 6 6.9229 -5.9371 1.1405 18 8 8.2571 -5.5935 0.7634 19 6 8.4219 -4.7450 -0.2847 20 6 9.6719 -4.6770 -0.8940 21 35 11.0897 -5.7558 -0.2599 22 6 9.8796 -3.8241 -1.9594 23 6 8.8438 -3.0341 -2.4234 24 6 7.6024 -3.1002 -1.8219 25 6 7.3872 -3.9555 -0.7537 26 1 -0.4850 0.8400 0.0004 27 1 3.7018 -0.9251 1.9982 28 1 3.6585 -3.1503 -0.8903 29 1 3.6578 -3.1506 0.8897 30 1 5.8521 -2.1848 0.8264 31 1 6.5998 -3.9602 1.9505 32 1 5.1046 -4.8745 1.6236 33 1 6.9342 -6.4544 2.0999 34 1 6.4810 -6.5816 0.3806 35 1 10.8503 -3.7739 -2.4302 36 1 9.0054 -2.3662 -3.2565 37 1 6.7954 -2.4817 -2.1861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930330768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:37 Heat of formation + Delta-G solvation = -77.275127 kcal Electronic energy + Delta-G solvation = -21616.727677 eV Core-core repulsion = 18211.478051 eV Total energy + Delta-G solvation = -3405.249626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.81970 -38.75059 -38.53324 -36.88084 -34.41523 -33.42708 -32.32700 -31.68147 -29.95256 -29.86498 -26.72636 -25.01435 -24.56901 -22.90699 -22.31431 -21.08942 -19.37793 -18.79036 -17.76077 -17.19564 -16.91976 -16.79058 -16.20146 -15.98486 -15.55721 -15.37298 -15.01165 -14.89098 -14.64811 -14.41648 -13.92506 -13.73935 -13.50220 -13.24616 -13.02585 -12.75795 -12.54621 -12.45266 -12.25747 -11.91107 -11.84254 -11.67345 -11.48717 -11.14009 -11.07519 -10.80797 -10.16806 -9.67112 -9.30966 -9.17564 -8.34761 -6.49207 0.13556 0.31920 0.71078 1.41918 1.47479 1.76956 2.22867 2.44897 2.60639 3.03661 3.16946 3.58342 3.69354 3.78393 4.00974 4.09771 4.12076 4.27471 4.37873 4.38371 4.39256 4.47832 4.56079 4.65384 4.74856 4.85370 4.97615 5.05129 5.10629 5.40138 5.43448 5.54630 5.55504 5.72993 6.07740 6.09507 6.29827 6.46905 6.65352 7.20542 7.35803 8.79338 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.002752 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.538758 B =10173.180416 C =10732.340683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.028 3.972 3 Si 0.940 3.060 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.204 1.204 7 C -0.564 4.564 8 H 0.038 0.962 9 C 0.206 3.794 10 H 0.053 0.947 11 O -0.581 6.581 12 C 0.062 3.938 13 N -0.674 5.674 14 C 0.132 3.868 15 H 0.088 0.912 16 C -0.183 4.183 17 C 0.063 3.937 18 O -0.316 6.316 19 C 0.148 3.852 20 C -0.146 4.146 21 Br -0.044 7.044 22 C -0.059 4.059 23 C -0.152 4.152 24 C -0.048 4.048 25 C -0.155 4.155 26 H 0.266 0.734 27 H 0.366 0.634 28 H 0.065 0.935 29 H 0.030 0.970 30 H 0.348 0.652 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.133 0.867 34 H 0.074 0.926 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.656 -13.127 -0.650 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.172 4.172 3 Si 0.764 3.236 4 H -0.214 1.214 5 H -0.228 1.228 6 H -0.125 1.125 7 C -0.602 4.602 8 H 0.056 0.944 9 C 0.148 3.852 10 H 0.071 0.929 11 O -0.388 6.388 12 C -0.067 4.067 13 N -0.305 5.305 14 C 0.022 3.978 15 H 0.106 0.894 16 C -0.222 4.222 17 C -0.012 4.012 18 O -0.230 6.230 19 C 0.100 3.900 20 C -0.225 4.225 21 Br 0.041 6.959 22 C -0.079 4.079 23 C -0.171 4.171 24 C -0.066 4.066 25 C -0.157 4.157 26 H 0.075 0.925 27 H 0.213 0.787 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.167 0.833 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.150 0.850 34 H 0.092 0.908 35 H 0.174 0.826 36 H 0.172 0.828 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 24.497 -13.014 -1.398 27.774 hybrid contribution -1.572 0.326 0.984 1.883 sum 22.925 -12.688 -0.414 26.206 Atomic orbital electron populations 1.70081 1.08545 1.28369 1.51042 1.25854 0.95217 1.03650 0.92479 0.85977 0.81925 0.77410 0.78262 1.21398 1.22794 1.12532 1.21851 0.92499 0.93239 1.52632 0.94406 1.19555 0.90166 0.89684 0.85769 0.92925 1.86634 1.77309 1.58083 1.16732 1.22297 0.86434 0.97851 1.00126 1.60376 1.07361 1.15891 1.46853 1.20319 0.92048 0.90186 0.95274 0.89414 1.22935 1.02639 0.98659 0.97986 1.23177 0.79178 0.95893 1.02907 1.86062 1.31038 1.60512 1.45356 1.18465 0.92650 0.90950 0.87928 1.21380 0.92502 1.05857 1.02801 1.96632 1.43054 1.67554 1.88615 1.21210 1.00742 0.92835 0.93066 1.21366 0.92261 1.01243 1.02224 1.21265 0.97863 0.94777 0.92722 1.19867 0.95225 1.00342 1.00310 0.92518 0.78687 0.91616 0.95151 0.83281 0.90643 0.88755 0.84968 0.90763 0.82625 0.82762 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.51 13.96 21.45 0.30 -57.21 16 2 C 0.03 1.56 5.47 84.66 0.46 2.02 16 3 Si 0.94 44.37 26.99 68.60 1.85 46.22 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.20 -9.09 5.31 99.48 0.53 -8.56 16 7 C -0.56 -30.30 9.34 25.60 0.24 -30.06 16 8 H 0.04 2.23 7.99 -2.91 -0.02 2.21 16 9 C 0.21 8.83 2.58 29.85 0.08 8.91 16 10 H 0.05 2.39 7.57 -2.38 -0.02 2.37 16 11 O -0.58 -23.35 9.58 -148.98 -1.43 -24.78 16 12 C 0.06 2.13 5.16 86.30 0.44 2.57 16 13 N -0.67 -19.23 5.43 -495.21 -2.69 -21.91 16 14 C 0.13 3.17 2.60 44.22 0.11 3.28 16 15 H 0.09 2.14 7.69 -2.39 -0.02 2.13 16 16 C -0.18 -3.63 5.54 30.75 0.17 -3.46 16 17 C 0.06 1.11 7.03 72.12 0.51 1.62 16 18 O -0.32 -7.30 9.51 -91.91 -0.87 -8.18 16 19 C 0.15 3.63 6.47 22.53 0.15 3.77 16 20 C -0.15 -3.33 6.24 22.46 0.14 -3.19 16 21 Br -0.04 -0.91 33.05 -20.37 -0.67 -1.58 16 22 C -0.06 -1.14 9.77 22.23 0.22 -0.92 16 23 C -0.15 -2.97 10.04 22.25 0.22 -2.75 16 24 C -0.05 -1.13 9.27 22.31 0.21 -0.92 16 25 C -0.16 -3.81 5.56 -19.75 -0.11 -3.92 16 26 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 27 H 0.37 12.83 9.04 -74.06 -0.67 12.16 16 28 H 0.07 2.33 7.92 -2.39 -0.02 2.31 16 29 H 0.03 1.01 8.01 -2.39 -0.02 0.99 16 30 H 0.35 9.97 7.83 -89.70 -0.70 9.27 16 31 H 0.07 1.59 7.90 -2.38 -0.02 1.58 16 32 H 0.09 1.74 8.02 -2.39 -0.02 1.72 16 33 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 36 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.13 3.37 7.70 -2.91 -0.02 3.35 16 Total: -1.00 -64.46 323.49 -1.12 -65.57 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -0.44 Total: 24.93 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 2.84 Total: -23.05 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -2.39 Total: -79.13 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -2.30 Total: -32.95 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.85 Total: 46.22 kcal Atomic # 35 Polarization: -0.91 SS G_CDS: -0.67 Total: -1.58 kcal Total: -64.46 -1.12 -65.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930330768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.701 kcal (2) G-P(sol) polarization free energy of solvation -64.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds