Wall clock time and date at job start Sat Apr 11 2020 06:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86800 * 120.00311 * 2 1 4 4 H 1.48503 * 109.47192 * 239.99942 * 3 2 1 5 5 H 1.48505 * 109.46615 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47562 * 119.99546 * 3 2 1 7 7 C 1.37884 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99423 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00062 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47209 * 300.00279 * 9 7 2 11 11 O 1.42911 * 109.46612 * 60.00129 * 9 7 2 12 12 C 1.52997 * 109.47129 * 179.97438 * 9 7 2 13 13 N 1.46896 * 109.47112 * 180.02562 * 12 9 7 14 14 C 1.47962 * 111.00206 * 170.00029 * 13 12 9 15 15 C 1.53933 * 86.18036 * 137.57868 * 14 13 12 16 16 O 1.42903 * 113.73455 * 90.64263 * 15 14 13 17 17 C 1.50702 * 113.73325 * 221.81483 * 15 14 13 18 18 C 1.38238 * 119.98904 * 27.82663 * 17 15 14 19 19 C 1.38221 * 120.00749 * 179.77061 * 18 17 15 20 20 C 1.38331 * 119.99149 * 0.50096 * 19 18 17 21 21 Br 1.89091 * 120.01107 * 179.77004 * 20 19 18 22 22 C 1.38323 * 119.97804 * 359.75385 * 20 19 18 23 23 C 1.38222 * 119.98870 * 359.97438 * 22 20 19 24 24 C 1.48304 * 111.00332 * 269.35041 * 13 12 9 25 25 H 0.97001 * 120.00254 * 0.02562 * 1 2 3 26 26 H 0.96693 * 114.00043 * 60.00293 * 11 9 7 27 27 H 1.08991 * 109.47191 * 60.00100 * 12 9 7 28 28 H 1.09001 * 109.47318 * 300.00231 * 12 9 7 29 29 H 1.08997 * 113.75944 * 23.26083 * 14 13 12 30 30 H 1.09001 * 113.85960 * 251.90728 * 14 13 12 31 31 H 0.96700 * 114.00311 * 181.89938 * 16 15 14 32 32 H 1.07996 * 119.99687 * 0.02562 * 18 17 15 33 33 H 1.07995 * 120.00345 * 180.27696 * 19 18 17 34 34 H 1.07994 * 120.00928 * 179.97438 * 22 20 19 35 35 H 1.08007 * 119.99069 * 180.02562 * 23 22 20 36 36 H 1.09004 * 113.85839 * 108.14487 * 24 13 12 37 37 H 1.09000 * 113.75896 * 336.68350 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6246 -2.5563 0.8919 11 8 0.4290 -2.5756 -1.1648 12 6 2.2452 -3.6621 0.0015 13 7 1.5107 -4.9342 0.0020 14 6 2.4236 -6.0737 -0.2381 15 6 1.6408 -6.8011 0.8699 16 8 0.5296 -7.5587 0.3866 17 6 2.5148 -7.5804 1.8184 18 6 3.8195 -7.1816 2.0417 19 6 4.6200 -7.8934 2.9152 20 6 4.1188 -9.0109 3.5582 21 35 5.2155 -9.9888 4.7483 22 6 2.8149 -9.4126 3.3304 23 6 2.0133 -8.6970 2.4610 24 6 1.2592 -5.4022 1.3866 25 1 -0.4850 0.8400 -0.0004 26 1 0.9208 -2.5308 -1.9961 27 1 2.8725 -3.6040 0.8909 28 1 2.8712 -3.6047 -0.8890 29 1 3.4619 -5.8668 0.0212 30 1 2.3136 -6.5268 -1.2234 31 1 0.0178 -7.9938 1.0822 32 1 4.2120 -6.3114 1.5367 33 1 5.6378 -7.5791 3.0930 34 1 2.4232 -10.2853 3.8318 35 1 0.9951 -9.0104 2.2834 36 1 0.2180 -5.3181 1.6981 37 1 1.9576 -4.9993 2.1200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931069363.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:46 Heat of formation + Delta-G solvation = -25.608685 kcal Electronic energy + Delta-G solvation = -21312.166336 eV Core-core repulsion = 17909.157134 eV Total energy + Delta-G solvation = -3403.009201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.85756 -38.75812 -36.16048 -34.96730 -32.75372 -32.07430 -31.40512 -30.32850 -29.05269 -26.40941 -26.06956 -23.92449 -23.16205 -21.97468 -20.30425 -19.76963 -18.08220 -16.98073 -16.19777 -15.87639 -15.50779 -15.02194 -14.81966 -14.70731 -14.50843 -13.94017 -13.69233 -13.59198 -13.32127 -12.82263 -12.73290 -12.35047 -12.10030 -11.79379 -11.58294 -11.26720 -11.08856 -10.92918 -10.89630 -10.63428 -10.59123 -10.43025 -10.11066 -9.88822 -9.37359 -9.08153 -8.83799 -8.57274 -8.33723 -7.93006 -5.99747 -4.19121 0.70130 0.96119 1.29313 3.20511 3.28036 3.33779 3.34813 3.86451 4.16006 4.32791 4.36333 4.44724 4.55394 4.65579 4.94484 5.06889 5.25506 5.27866 5.32144 5.42663 5.59826 5.66058 5.70945 5.85403 5.86224 5.91986 6.03079 6.12894 6.22821 6.42862 6.51222 6.71058 6.86013 7.43138 7.54102 7.74287 7.86692 8.19388 8.84585 9.47207 9.63911 11.04230 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.002406 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.120340 B =11633.616107 C =12633.916417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.577 4.577 8 H 0.053 0.947 9 C 0.243 3.757 10 H 0.052 0.948 11 O -0.553 6.553 12 C -0.007 4.007 13 N -0.448 5.448 14 C 0.014 3.986 15 C 0.138 3.862 16 O -0.520 6.520 17 C -0.081 4.081 18 C -0.105 4.105 19 C -0.085 4.085 20 C -0.094 4.094 21 Br -0.055 7.055 22 C -0.086 4.086 23 C -0.109 4.109 24 C -0.009 4.009 25 H 0.261 0.739 26 H 0.342 0.658 27 H 0.037 0.963 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.373 0.627 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.094 0.906 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.351 -22.562 9.189 26.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.616 4.616 8 H 0.072 0.928 9 C 0.185 3.815 10 H 0.069 0.931 11 O -0.355 6.355 12 C -0.135 4.135 13 N -0.170 5.170 14 C -0.115 4.115 15 C 0.096 3.904 16 O -0.325 6.325 17 C -0.083 4.083 18 C -0.124 4.124 19 C -0.105 4.105 20 C -0.173 4.173 21 Br 0.030 6.970 22 C -0.106 4.106 23 C -0.127 4.127 24 C -0.138 4.138 25 H 0.071 0.929 26 H 0.184 0.816 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.222 0.778 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.112 0.888 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.776 -22.504 9.071 25.802 hybrid contribution 1.364 1.018 0.560 1.792 sum 10.140 -21.486 9.631 25.636 Atomic orbital electron populations 1.70072 1.05924 1.26525 1.46742 1.25028 0.94681 0.99063 0.93854 0.86742 0.79727 0.83264 0.78646 1.20136 1.21158 1.20216 1.21627 0.93029 0.91689 1.55211 0.92842 1.19167 0.87626 0.88168 0.86515 0.93050 1.86581 1.37678 1.96271 1.14925 1.23670 0.97862 0.92023 0.99993 1.68814 1.31382 1.00814 1.16030 1.24204 0.95483 0.92444 0.99356 1.21564 0.86672 0.88934 0.93233 1.86643 1.41763 1.67910 1.36214 1.20586 0.95021 0.95600 0.97047 1.21097 0.93068 1.00199 0.97997 1.21123 1.00407 0.93487 0.95473 1.21800 0.95545 0.98871 1.01113 1.96720 1.66872 1.73029 1.60346 1.21065 0.91966 0.99819 0.97763 1.20924 1.00231 0.95000 0.96577 1.24742 1.03346 0.92559 0.93174 0.92906 0.81553 0.94437 0.91749 0.90394 0.88653 0.77847 0.84647 0.84750 0.84864 0.84993 0.88764 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.55 12.84 55.43 0.71 -24.84 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.58 -15.78 8.76 -34.44 -0.30 -16.08 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 9 C 0.24 6.21 3.08 -27.89 -0.09 6.12 16 10 H 0.05 1.46 8.14 -51.93 -0.42 1.04 16 11 O -0.55 -14.77 12.59 -35.23 -0.44 -15.21 16 12 C -0.01 -0.14 4.40 -3.83 -0.02 -0.16 16 13 N -0.45 -8.10 6.03 -237.94 -1.44 -9.54 16 14 C 0.01 0.20 7.13 -2.76 -0.02 0.18 16 15 C 0.14 1.78 1.78 -90.84 -0.16 1.62 16 16 O -0.52 -6.74 13.26 -35.23 -0.47 -7.21 16 17 C -0.08 -0.88 5.26 -104.62 -0.55 -1.43 16 18 C -0.10 -1.09 9.09 -39.59 -0.36 -1.45 16 19 C -0.09 -0.82 9.79 -39.55 -0.39 -1.21 16 20 C -0.09 -0.90 6.22 -39.52 -0.25 -1.15 16 21 Br -0.06 -0.48 33.70 -68.01 -2.29 -2.77 16 22 C -0.09 -0.77 9.79 -39.56 -0.39 -1.15 16 23 C -0.11 -1.00 9.38 -39.59 -0.37 -1.37 16 24 C -0.01 -0.14 7.33 -2.57 -0.02 -0.16 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.34 8.18 9.04 45.56 0.41 8.59 16 27 H 0.04 0.72 7.38 -51.93 -0.38 0.33 16 28 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 29 H 0.08 0.97 5.69 -51.93 -0.30 0.68 16 30 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.37 3.18 7.26 45.56 0.33 3.51 16 32 H 0.14 1.34 6.14 -52.49 -0.32 1.01 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 0.90 6.41 -52.48 -0.34 0.56 16 36 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.07 1.11 7.37 -51.93 -0.38 0.72 16 LS Contribution 330.66 15.07 4.98 4.98 Total: -1.00 -32.47 330.66 -10.02 -42.49 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -3.05 Total: 10.12 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -3.00 Total: -14.08 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: -0.72 Total: -34.38 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.91 Total: -22.42 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.29 Total: -2.77 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.47 -10.02 -42.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931069363.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.879 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds