Wall clock time and date at job start Sat Apr 11 2020 06:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 O 1.42903 * 109.47006 * 59.71863 * 9 7 2 12 12 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 13 13 N 1.46896 * 109.47256 * 180.02562 * 12 9 7 14 14 C 1.47474 * 111.00381 * 74.02670 * 13 12 9 15 15 C 1.53513 * 87.93507 * 138.70421 * 14 13 12 16 16 O 1.42899 * 114.17085 * 87.62160 * 15 14 13 17 17 C 1.50694 * 114.34339 * 220.31622 * 15 14 13 18 18 C 1.38265 * 119.99504 * 243.92275 * 17 15 14 19 19 C 1.38218 * 120.02070 * 179.97438 * 18 17 15 20 20 C 1.38237 * 120.01222 * 0.02562 * 19 18 17 21 21 C 1.38307 * 119.98696 * 0.02562 * 20 19 18 22 22 Br 1.89102 * 120.00950 * 180.02562 * 21 20 19 23 23 C 1.38197 * 119.99714 * 63.64539 * 17 15 14 24 24 C 1.47480 * 110.99824 * 169.99800 * 13 12 9 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 0.96697 * 113.99557 * 60.00730 * 11 9 7 27 27 H 1.09004 * 109.47066 * 299.99797 * 12 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 12 9 7 29 29 H 1.08999 * 113.47567 * 253.47052 * 14 13 12 30 30 H 1.09003 * 113.47787 * 23.93657 * 14 13 12 31 31 H 0.96697 * 113.99856 * 86.15874 * 16 15 14 32 32 H 1.08001 * 119.98940 * 359.97438 * 18 17 15 33 33 H 1.08000 * 119.99525 * 179.97438 * 19 18 17 34 34 H 1.07999 * 120.01020 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.00174 * 0.02562 * 23 17 15 36 36 H 1.08995 * 113.48138 * 336.06073 * 24 13 12 37 37 H 1.09007 * 113.47025 * 106.53175 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.8786 -0.6821 -0.8838 11 8 3.9830 -0.5181 1.1732 12 6 4.0215 -2.6366 0.0108 13 7 5.4905 -2.6366 0.0175 14 6 6.0130 -2.2553 1.3428 15 6 7.0699 -3.3569 1.1815 16 8 8.2574 -2.9343 0.5082 17 6 7.3457 -4.1419 2.4379 18 6 8.5973 -4.0922 3.0234 19 6 8.8506 -4.8117 4.1760 20 6 7.8528 -5.5817 4.7438 21 6 6.6010 -5.6326 4.1579 22 35 5.2354 -6.6853 4.9345 23 6 6.3459 -4.9070 3.0080 24 6 6.0178 -3.9921 0.2616 25 1 -0.4849 0.8400 0.0004 26 1 3.6942 -0.9200 2.0039 27 1 3.6545 -3.1486 0.9003 28 1 3.6618 -3.1522 -0.8796 29 1 6.4341 -1.2503 1.3709 30 1 5.3118 -2.4421 2.1562 31 1 8.9183 -2.5346 1.0899 32 1 9.3772 -3.4910 2.5799 33 1 9.8285 -4.7728 4.6328 34 1 8.0507 -6.1435 5.6447 35 1 5.3671 -4.9425 2.5529 36 1 5.3180 -4.6424 0.7863 37 1 6.4431 -4.4590 -0.6269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931104633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:52 Heat of formation + Delta-G solvation = -19.054269 kcal Electronic energy + Delta-G solvation = -21754.762469 eV Core-core repulsion = 18352.037488 eV Total energy + Delta-G solvation = -3402.724981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.02273 -38.89798 -36.51186 -35.21018 -32.60925 -32.26457 -31.91532 -29.82861 -29.45361 -26.86481 -25.85980 -24.20614 -22.93338 -21.85278 -20.41225 -19.82865 -18.12298 -17.21608 -16.38527 -15.88326 -15.54634 -15.19436 -14.90296 -14.73647 -14.62669 -13.99545 -13.86467 -13.67849 -13.27785 -13.00382 -12.59351 -12.54080 -12.39160 -11.78721 -11.57199 -11.47689 -11.23827 -11.05163 -10.90031 -10.63826 -10.53037 -10.29325 -10.09245 -9.91603 -9.15687 -9.05432 -8.93198 -8.63589 -8.49154 -8.23521 -6.13896 -4.25620 0.74359 0.90442 1.34083 3.19868 3.40582 3.49370 3.75616 3.85500 4.09651 4.38575 4.47151 4.53921 4.62193 4.69750 4.81722 5.02777 5.19764 5.21885 5.28953 5.41468 5.55286 5.63479 5.73142 5.81847 5.84764 5.90026 5.95158 6.02270 6.11272 6.19908 6.41554 6.59207 6.75390 7.17069 7.44386 7.50385 7.64726 8.25898 8.80254 8.98067 9.50763 10.96631 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.014078 B = 0.003518 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.430473 B = 7957.622051 C = 9257.136446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.085 3.915 3 Si 0.873 3.127 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.217 1.217 7 C -0.566 4.566 8 H 0.071 0.929 9 C 0.201 3.799 10 H 0.063 0.937 11 O -0.577 6.577 12 C 0.003 3.997 13 N -0.454 5.454 14 C 0.007 3.993 15 C 0.131 3.869 16 O -0.519 6.519 17 C -0.087 4.087 18 C -0.100 4.100 19 C -0.109 4.109 20 C -0.095 4.095 21 C -0.085 4.085 22 Br -0.048 7.048 23 C -0.082 4.082 24 C 0.010 3.990 25 H 0.265 0.735 26 H 0.350 0.650 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.373 0.627 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.079 0.921 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.526 -13.837 12.019 26.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.120 4.120 3 Si 0.699 3.301 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.139 1.139 7 C -0.604 4.604 8 H 0.089 0.911 9 C 0.144 3.856 10 H 0.081 0.919 11 O -0.383 6.383 12 C -0.125 4.125 13 N -0.176 5.176 14 C -0.122 4.122 15 C 0.089 3.911 16 O -0.324 6.324 17 C -0.089 4.089 18 C -0.118 4.118 19 C -0.128 4.128 20 C -0.115 4.115 21 C -0.164 4.164 22 Br 0.037 6.963 23 C -0.101 4.101 24 C -0.119 4.119 25 H 0.074 0.926 26 H 0.195 0.805 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.222 0.778 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.097 0.903 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.957 -13.600 10.713 24.943 hybrid contribution 0.019 0.376 1.313 1.366 sum 17.976 -13.223 12.025 25.350 Atomic orbital electron populations 1.69958 1.06812 1.27505 1.48711 1.24986 0.94599 1.00004 0.92400 0.86997 0.82946 0.81665 0.78467 1.21355 1.22366 1.13927 1.21491 0.89783 0.94823 1.54275 0.91088 1.19728 0.93341 0.86782 0.85792 0.91947 1.86737 1.77588 1.57735 1.16202 1.23369 0.86500 1.01695 1.00986 1.68988 1.11097 1.10542 1.26999 1.24365 0.95278 0.99722 0.92839 1.21195 0.86103 0.95024 0.88782 1.86619 1.27435 1.81391 1.36988 1.20275 0.93949 0.97688 0.96988 1.21048 0.96324 0.98949 0.95518 1.21124 0.99204 0.96659 0.95814 1.21135 0.91470 0.99014 0.99878 1.21784 0.94326 1.01599 0.98691 1.96764 1.48975 1.68192 1.82341 1.20993 0.99902 0.95152 0.94077 1.24088 0.94328 0.94287 0.99164 0.92565 0.80458 0.94534 0.90364 0.88695 0.90797 0.77834 0.85262 0.84906 0.84958 0.84633 0.90301 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.25 13.96 55.43 0.77 -26.47 16 2 C 0.08 2.43 5.47 -17.82 -0.10 2.34 16 3 Si 0.87 21.96 26.99 -169.99 -4.59 17.37 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.22 -5.31 5.30 56.52 0.30 -5.01 16 7 C -0.57 -15.60 9.34 -34.44 -0.32 -15.93 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C 0.20 4.67 2.58 -27.88 -0.07 4.60 16 10 H 0.06 1.56 7.58 -51.93 -0.39 1.17 16 11 O -0.58 -12.64 8.04 -35.23 -0.28 -12.93 16 12 C 0.00 0.06 4.61 -3.83 -0.02 0.04 16 13 N -0.45 -7.85 6.41 -244.65 -1.57 -9.42 16 14 C 0.01 0.11 5.15 -7.56 -0.04 0.07 16 15 C 0.13 1.66 1.91 -91.24 -0.17 1.48 16 16 O -0.52 -6.45 13.31 -35.23 -0.47 -6.92 16 17 C -0.09 -0.94 5.33 -104.63 -0.56 -1.50 16 18 C -0.10 -0.87 9.37 -39.58 -0.37 -1.24 16 19 C -0.11 -0.84 10.05 -39.59 -0.40 -1.24 16 20 C -0.10 -0.82 9.79 -39.56 -0.39 -1.21 16 21 C -0.08 -0.87 6.22 -39.52 -0.25 -1.12 16 22 Br -0.05 -0.49 33.70 -68.01 -2.29 -2.78 16 23 C -0.08 -0.91 8.64 -39.56 -0.34 -1.25 16 24 C 0.01 0.14 6.93 -7.55 -0.05 0.09 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.35 6.83 8.55 45.56 0.39 7.22 16 27 H 0.04 0.68 7.56 -51.93 -0.39 0.28 16 28 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.09 1.52 8.03 -51.93 -0.42 1.11 16 30 H 0.07 1.08 6.91 -51.93 -0.36 0.72 16 31 H 0.37 3.00 7.16 45.56 0.33 3.33 16 32 H 0.13 0.80 6.35 -52.49 -0.33 0.47 16 33 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.14 1.55 6.28 -52.49 -0.33 1.22 16 36 H 0.08 1.02 5.66 -51.93 -0.29 0.72 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 320.10 15.07 4.82 4.82 Total: -1.00 -32.44 320.10 -9.83 -42.27 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -3.15 Total: 8.93 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -3.08 Total: -14.87 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.80 Total: -35.89 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.75 Total: -19.84 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.59 Total: 17.37 kcal Atomic # 35 Polarization: -0.49 SS G_CDS: -2.29 Total: -2.78 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.44 -9.83 -42.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931104633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.213 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds