Wall clock time and date at job start Sat Apr 11 2020 06:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00127 * 2 1 4 4 H 1.48501 * 109.47108 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47445 * 120.00018 * 3 2 1 6 6 H 1.48504 * 109.47380 * 240.00202 * 3 2 1 7 7 C 1.37882 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00291 * 192.25217 * 7 2 1 9 9 C 1.50701 * 119.99626 * 12.25475 * 7 2 1 10 10 O 1.42902 * 112.94457 * 53.48951 * 9 7 2 11 11 C 1.53944 * 113.74177 * 281.75006 * 9 7 2 12 12 N 1.47579 * 86.11905 * 222.04872 * 11 9 7 13 13 C 1.34770 * 134.49297 * 204.64200 * 12 11 9 14 14 O 1.21579 * 120.00029 * 180.02562 * 13 12 11 15 15 N 1.34779 * 120.00092 * 359.97438 * 13 12 11 16 16 C 1.39544 * 119.99906 * 184.67323 * 15 13 12 17 17 C 1.39447 * 120.85225 * 324.34148 * 16 15 13 18 18 C 1.37905 * 119.09570 * 179.75122 * 17 16 15 19 19 N 1.32004 * 120.85056 * 0.53707 * 18 17 16 20 20 C 1.32026 * 121.87672 * 359.73779 * 19 18 17 21 21 Br 1.89099 * 119.59182 * 180.02562 * 20 19 18 22 22 C 1.38090 * 120.81463 * 359.97438 * 20 19 18 23 23 C 1.47588 * 91.01173 * 24.64224 * 12 11 9 24 24 H 0.97003 * 120.00155 * 185.59272 * 1 2 3 25 25 H 0.96699 * 113.99622 * 303.86990 * 10 9 7 26 26 H 1.08994 * 113.77119 * 336.35716 * 11 9 7 27 27 H 1.09004 * 113.76708 * 107.75120 * 11 9 7 28 28 H 0.96996 * 119.99857 * 4.67958 * 15 13 12 29 29 H 1.08000 * 120.45761 * 0.02562 * 17 16 15 30 30 H 1.07995 * 119.57336 * 180.24437 * 18 17 16 31 31 H 1.08007 * 120.46567 * 180.02562 * 22 20 19 32 32 H 1.09003 * 113.76762 * 221.05887 * 23 12 11 33 33 H 1.09000 * 113.76788 * 89.66082 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0661 -1.2047 0.1990 9 6 1.2768 -2.4844 -0.2759 10 8 0.5318 -2.4537 -1.4950 11 6 0.4782 -3.0158 0.9281 12 7 0.9923 -4.3475 0.5537 13 6 0.5689 -5.6122 0.7476 14 8 1.2174 -6.5439 0.3121 15 7 -0.5728 -5.8442 1.4252 16 6 -0.9609 -7.1538 1.7107 17 6 -0.7163 -8.1857 0.8052 18 6 -1.1106 -9.4675 1.1266 19 7 -1.7214 -9.7214 2.2690 20 6 -1.9759 -8.7714 3.1498 21 35 -2.8541 -9.2079 4.7666 22 6 -1.6078 -7.4631 2.9053 23 6 2.1563 -3.7380 -0.1185 24 1 -0.4850 -0.8361 0.0819 25 1 -0.1086 -1.7310 -1.5465 26 1 0.8442 -2.6581 1.8905 27 1 -0.6016 -2.9149 0.8181 28 1 -1.1248 -5.1008 1.7143 29 1 -0.2208 -7.9846 -0.1331 30 1 -0.9215 -10.2731 0.4327 31 1 -1.8184 -6.6904 3.6300 32 1 2.4165 -4.2138 -1.0640 33 1 3.0154 -3.5926 0.5365 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118572514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:09 Heat of formation + Delta-G solvation = -14.846510 kcal Electronic energy + Delta-G solvation = -21015.556183 eV Core-core repulsion = 17509.473321 eV Total energy + Delta-G solvation = -3506.082862 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.016 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.19456 -41.10502 -39.65963 -36.52150 -36.19065 -34.32771 -33.57402 -32.42152 -30.81380 -29.93567 -27.31346 -26.82818 -24.73029 -24.33279 -22.33462 -20.95428 -20.14326 -19.35663 -18.64130 -17.63812 -17.31653 -17.04477 -16.76573 -16.25521 -16.05592 -15.62438 -15.46415 -15.36602 -14.89584 -14.53912 -14.47895 -13.98079 -13.47213 -13.20595 -12.99086 -12.65786 -12.42795 -12.35778 -11.95666 -11.90682 -11.69636 -11.56506 -11.18203 -10.80999 -10.71880 -10.34738 -10.17374 -10.01388 -9.58262 -8.67125 -6.48867 -0.25438 -0.10320 0.17720 1.15128 1.62868 1.65949 1.80712 1.87023 2.46966 2.51778 2.57919 2.92753 3.39253 3.43068 3.68542 3.80751 3.86262 3.91479 4.21993 4.32701 4.37583 4.44266 4.47894 4.60713 4.65512 4.88140 4.95772 5.04458 5.46708 5.71716 5.86556 6.09506 6.46563 6.56442 6.71009 6.91812 7.17056 7.26910 8.66266 Molecular weight = 341.02amu Principal moments of inertia in cm(-1) A = 0.024768 B = 0.002462 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.208824 B =11370.275774 C =12142.317609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.001 3.999 3 Si 1.109 2.891 4 H -0.286 1.286 5 H -0.270 1.270 6 H -0.279 1.279 7 C -0.631 4.631 8 H 0.063 0.937 9 C 0.199 3.801 10 O -0.576 6.576 11 C 0.084 3.916 12 N -0.646 5.646 13 C 0.721 3.279 14 O -0.611 6.611 15 N -0.669 5.669 16 C 0.211 3.789 17 C -0.172 4.172 18 C 0.130 3.870 19 N -0.492 5.492 20 C 0.130 3.870 21 Br 0.008 6.992 22 C -0.165 4.165 23 C 0.145 3.855 24 H 0.265 0.735 25 H 0.375 0.625 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.423 0.577 29 H 0.144 0.856 30 H 0.197 0.803 31 H 0.169 0.831 32 H 0.067 0.933 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.471 -13.463 8.861 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.201 4.201 3 Si 0.931 3.069 4 H -0.211 1.211 5 H -0.195 1.195 6 H -0.204 1.204 7 C -0.669 4.669 8 H 0.081 0.919 9 C 0.159 3.841 10 O -0.384 6.384 11 C -0.039 4.039 12 N -0.382 5.382 13 C 0.425 3.575 14 O -0.492 6.492 15 N -0.317 5.317 16 C 0.106 3.894 17 C -0.195 4.195 18 C -0.027 4.027 19 N -0.204 5.204 20 C -0.087 4.087 21 Br 0.092 6.908 22 C -0.191 4.191 23 C 0.023 3.977 24 H 0.077 0.923 25 H 0.224 0.776 26 H 0.112 0.888 27 H 0.093 0.907 28 H 0.261 0.739 29 H 0.161 0.839 30 H 0.213 0.787 31 H 0.186 0.814 32 H 0.085 0.915 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.439 -14.170 9.152 18.055 hybrid contribution 0.061 0.139 -0.340 0.373 sum -6.378 -14.031 8.811 17.753 Atomic orbital electron populations 1.71029 1.07520 1.30636 1.46157 1.27013 0.96407 1.05690 0.91022 0.83004 0.74328 0.71825 0.77719 1.21132 1.19505 1.20448 1.22461 0.97402 0.92744 1.54246 0.91877 1.20304 0.89141 0.93065 0.81636 1.86246 1.56865 1.55124 1.40129 1.24291 0.99965 0.78086 1.01534 1.49254 1.28134 1.02850 1.57991 1.15523 0.80948 0.82124 0.78886 1.90860 1.59150 1.42252 1.56922 1.42300 1.23649 1.06989 1.58779 1.17852 0.94371 0.84478 0.92713 1.22495 1.01991 0.93942 1.01114 1.23089 0.91270 0.95826 0.92534 1.67534 1.14058 1.35543 1.03248 1.22677 0.99950 0.90694 0.95350 1.96783 1.75924 1.95037 1.23067 1.21827 1.03467 0.97298 0.96461 1.23254 0.89441 0.88904 0.96111 0.92336 0.77604 0.88790 0.90669 0.73904 0.83855 0.78654 0.81398 0.91493 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.27 12.82 21.45 0.27 -44.99 16 2 C 0.00 0.03 5.28 84.66 0.45 0.47 16 3 Si 1.11 43.06 29.92 68.60 2.05 45.11 16 4 H -0.29 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 6 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.63 -29.80 8.57 25.60 0.22 -29.59 16 8 H 0.06 2.96 7.84 -2.91 -0.02 2.94 16 9 C 0.20 8.64 1.08 -10.88 -0.01 8.63 16 10 O -0.58 -26.65 13.46 -148.98 -2.00 -28.66 16 11 C 0.08 3.10 6.94 86.48 0.60 3.69 16 12 N -0.65 -24.00 3.61 -858.37 -3.10 -27.10 16 13 C 0.72 26.16 8.62 179.06 1.54 27.70 16 14 O -0.61 -25.36 14.61 -3.96 -0.06 -25.41 16 15 N -0.67 -18.87 5.35 -316.70 -1.69 -20.57 16 16 C 0.21 5.64 6.33 38.47 0.24 5.88 16 17 C -0.17 -4.65 8.77 22.48 0.20 -4.46 16 18 C 0.13 2.99 11.17 84.59 0.95 3.94 16 19 N -0.49 -12.27 10.32 -191.03 -1.97 -14.24 16 20 C 0.13 3.06 7.16 84.63 0.61 3.66 16 21 Br 0.01 0.15 33.86 -20.37 -0.69 -0.54 16 22 C -0.17 -3.72 9.78 22.50 0.22 -3.50 16 23 C 0.15 5.77 8.23 86.48 0.71 6.48 16 24 H 0.27 12.64 5.46 -92.71 -0.51 12.14 16 25 H 0.37 17.12 6.84 -74.06 -0.51 16.61 16 26 H 0.09 3.39 8.09 -2.39 -0.02 3.37 16 27 H 0.07 2.59 7.82 -2.39 -0.02 2.57 16 28 H 0.42 9.88 8.44 -92.71 -0.78 9.10 16 29 H 0.14 4.35 6.37 -2.91 -0.02 4.33 16 30 H 0.20 3.15 8.06 -2.91 -0.02 3.12 16 31 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.10 3.79 8.09 -2.39 -0.02 3.77 16 Total: -1.00 -58.08 310.40 -1.31 -59.38 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: 0.16 Total: 34.09 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: 5.72 Total: 22.93 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -6.49 Total: -106.90 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -2.06 Total: -54.07 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.05 Total: 45.11 kcal Atomic # 35 Polarization: 0.15 SS G_CDS: -0.69 Total: -0.54 kcal Total: -58.08 -1.31 -59.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118572514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.537 kcal (2) G-P(sol) polarization free energy of solvation -58.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds