Wall clock time and date at job start Sat Apr 11 2020 06:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36939 * 119.99782 * 2 1 4 4 H 1.08006 * 119.99809 * 172.59530 * 3 2 1 5 5 C 1.38810 * 120.00425 * 352.60020 * 3 2 1 6 6 N 1.31623 * 119.99417 * 352.32613 * 5 3 2 7 7 Si 1.86797 * 120.00224 * 172.32609 * 5 3 2 8 8 H 1.48492 * 109.47178 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46934 * 120.00143 * 7 5 3 10 10 H 1.48501 * 109.47075 * 240.00013 * 7 5 3 11 11 C 1.46499 * 120.00378 * 180.27677 * 2 1 3 12 12 F 1.39900 * 109.46959 * 59.08713 * 11 2 1 13 13 F 1.39899 * 109.47682 * 179.08918 * 11 2 1 14 14 C 1.50697 * 109.47025 * 299.09126 * 11 2 1 15 15 C 1.38610 * 120.43039 * 117.73766 * 14 11 2 16 16 C 1.38662 * 118.43958 * 180.02562 * 15 14 11 17 17 S 1.76204 * 120.40202 * 180.02562 * 16 15 14 18 18 N 1.65603 * 107.21663 * 90.00097 * 17 16 15 19 19 O 1.42098 * 106.40364 * 203.53636 * 17 16 15 20 20 O 1.42093 * 106.40419 * 336.46127 * 17 16 15 21 21 C 1.38187 * 119.19471 * 359.97438 * 16 15 14 22 22 N 1.31875 * 120.77763 * 0.02562 * 21 16 15 23 23 C 1.31979 * 121.70776 * 359.69756 * 22 21 16 24 24 Cl 1.73603 * 119.63395 * 180.29538 * 23 22 21 25 25 H 1.09004 * 109.46938 * 65.19266 * 1 2 3 26 26 H 1.09000 * 109.47004 * 185.18671 * 1 2 3 27 27 H 1.09000 * 109.47176 * 305.19211 * 1 2 3 28 28 H 0.97004 * 119.99558 * 179.97438 * 6 5 3 29 29 H 1.08007 * 120.77722 * 359.97438 * 15 14 11 30 30 H 0.97005 * 120.00405 * 149.99898 * 18 17 16 31 31 H 0.96998 * 120.00338 * 329.99316 * 18 17 16 32 32 H 1.07999 * 119.60975 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.2229 1.1899 0.1205 5 6 1.4643 2.3831 -0.1548 6 7 0.1821 2.3736 -0.4519 7 14 2.3617 4.0075 0.0585 8 1 3.7861 3.7466 0.3870 9 1 2.2798 4.7874 -1.2025 10 1 1.7325 4.7796 1.1599 11 6 2.1976 -1.2687 -0.0061 12 9 1.8439 -2.0058 -1.1413 13 9 3.5729 -1.0130 -0.0259 14 6 1.8505 -2.0551 1.2316 15 6 1.2287 -3.2895 1.1277 16 6 0.9276 -3.9774 2.2934 17 16 0.1379 -5.5509 2.2215 18 7 1.3322 -6.6959 2.1494 19 8 -0.5145 -5.7300 3.4711 20 8 -0.5426 -5.6019 0.9752 21 6 1.2553 -3.4144 3.5121 22 7 1.8469 -2.2375 3.5745 23 6 2.1534 -1.5566 2.4862 24 17 2.9388 -0.0152 2.6308 25 1 -0.3633 0.4312 -0.9329 26 1 -0.3633 -1.0235 0.0929 27 1 -0.3633 0.5923 0.8398 28 1 -0.2970 3.2102 -0.5598 29 1 0.9836 -3.7053 0.1615 30 1 1.1828 -7.5771 2.5265 31 1 2.1811 -6.4855 1.7300 32 1 1.0243 -3.9446 4.4242 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165091975.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:41 Heat of formation + Delta-G solvation = -92.403836 kcal Electronic energy + Delta-G solvation = -26311.293821 eV Core-core repulsion = 21904.798848 eV Total energy + Delta-G solvation = -4406.494973 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.020 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -48.22434 -46.36108 -40.42435 -37.41251 -36.45218 -36.07843 -35.54502 -33.52303 -33.19312 -32.08174 -30.67310 -26.31012 -25.99489 -24.28395 -23.40872 -21.26492 -19.76654 -18.61392 -17.78840 -17.62891 -17.55032 -17.40258 -16.60878 -16.34324 -15.95587 -15.79598 -15.19492 -14.63163 -14.29061 -13.73162 -13.46196 -13.11138 -13.05747 -12.72756 -12.57307 -12.45129 -12.33923 -12.29102 -12.20421 -12.17751 -11.66898 -11.61690 -10.98588 -10.91963 -10.91438 -10.76331 -10.64761 -10.36591 -10.17307 -9.95667 -9.83056 -9.30700 -8.84550 -7.53129 -5.89971 -3.44913 0.02101 0.29229 0.77989 1.90286 2.80606 3.10685 3.26913 3.33039 3.35917 3.45002 3.59339 4.11780 4.19673 4.42786 4.49632 4.57806 4.84439 4.96306 5.14388 5.33052 5.43585 5.49531 5.65236 5.90433 5.99882 6.40972 6.69838 7.25497 7.31801 7.48735 7.68525 7.99461 8.90563 9.42476 9.84364 11.08039 Molecular weight = 341.02amu Principal moments of inertia in cm(-1) A = 0.020828 B = 0.004241 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.014158 B = 6600.187220 C = 6968.923062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.602 5.602 3 C -0.263 4.263 4 H 0.090 0.910 5 C 0.014 3.986 6 N -0.906 5.906 7 Si 0.913 3.087 8 H -0.275 1.275 9 H -0.286 1.286 10 H -0.286 1.286 11 C 0.564 3.436 12 F -0.215 7.215 13 F -0.181 7.181 14 C -0.199 4.199 15 C 0.060 3.940 16 C -0.750 4.750 17 S 2.716 3.284 18 N -1.248 6.248 19 O -0.959 6.959 20 O -0.952 6.952 21 C 0.228 3.772 22 N -0.494 5.494 23 C 0.268 3.732 24 Cl 0.036 6.964 25 H 0.071 0.929 26 H -0.002 1.002 27 H 0.047 0.953 28 H 0.256 0.744 29 H 0.169 0.831 30 H 0.421 0.579 31 H 0.418 0.582 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.677 -15.809 6.316 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.329 5.329 3 C -0.390 4.390 4 H 0.108 0.892 5 C -0.185 4.185 6 N -0.551 5.551 7 Si 0.741 3.259 8 H -0.200 1.200 9 H -0.212 1.212 10 H -0.212 1.212 11 C 0.437 3.563 12 F -0.197 7.197 13 F -0.162 7.162 14 C -0.207 4.207 15 C 0.033 3.967 16 C -0.839 4.839 17 S 2.801 3.199 18 N -0.922 5.922 19 O -0.948 6.948 20 O -0.941 6.941 21 C 0.067 3.933 22 N -0.206 5.206 23 C 0.105 3.895 24 Cl 0.066 6.934 25 H 0.089 0.911 26 H 0.017 0.983 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.186 0.814 30 H 0.252 0.748 31 H 0.246 0.754 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.808 -15.081 7.064 16.889 hybrid contribution 1.174 0.912 -0.768 1.674 sum 3.982 -14.169 6.296 16.008 Atomic orbital electron populations 1.21204 0.79003 0.94183 1.03543 1.45220 1.03872 0.99165 1.84658 1.19325 0.92706 0.82011 1.45001 0.89226 1.24898 0.96047 0.98110 0.99415 1.70177 1.07738 1.25657 1.51508 0.86052 0.79003 0.83090 0.77713 1.19995 1.21215 1.21197 1.17520 0.75042 0.83440 0.80313 1.93053 1.92041 1.79144 1.55480 1.92973 1.31939 1.94500 1.96760 1.21590 1.05438 0.96930 0.96736 1.21334 0.86038 0.90715 0.98585 1.31697 1.24734 1.26851 1.00582 1.01332 0.72313 0.72217 0.74072 1.53128 1.33446 1.28525 1.77107 1.93603 1.72029 1.85215 1.43974 1.93642 1.69945 1.85770 1.44712 1.22611 0.85540 0.88964 0.96141 1.67475 1.14489 1.07923 1.30668 1.22135 0.88842 0.89891 0.88642 1.98537 1.75802 1.20947 1.98160 0.91102 0.98346 0.93462 0.93337 0.81385 0.74826 0.75447 0.79935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.94 8.54 59.85 0.51 4.45 16 2 N -0.60 -14.56 2.47 -180.80 -0.45 -15.01 16 3 C -0.26 -6.77 7.56 -15.06 -0.11 -6.89 16 4 H 0.09 2.30 6.66 -52.48 -0.35 1.95 16 5 C 0.01 0.36 5.39 -17.43 -0.09 0.26 16 6 N -0.91 -24.81 9.65 55.49 0.54 -24.27 16 7 Si 0.91 21.09 29.56 -169.99 -5.02 16.07 16 8 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 9 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.56 11.90 1.94 -5.20 -0.01 11.89 16 12 F -0.22 -4.43 15.85 2.25 0.04 -4.40 16 13 F -0.18 -3.83 14.49 2.25 0.03 -3.80 16 14 C -0.20 -3.61 4.48 -104.44 -0.47 -4.08 16 15 C 0.06 0.89 9.01 -39.29 -0.35 0.54 16 16 C -0.75 -9.18 5.99 -39.44 -0.24 -9.42 16 17 S 2.72 27.04 6.29 -107.50 -0.68 26.36 16 18 N -1.25 -6.79 9.52 60.35 0.57 -6.22 16 19 O -0.96 -11.58 17.31 -57.17 -0.99 -12.57 16 20 O -0.95 -12.82 17.36 -57.17 -0.99 -13.81 16 21 C 0.23 2.91 10.69 -17.55 -0.19 2.72 16 22 N -0.49 -7.91 10.34 -10.36 -0.11 -8.01 16 23 C 0.27 4.86 7.19 -17.45 -0.13 4.74 16 24 Cl 0.04 0.69 24.70 -51.86 -1.28 -0.59 16 25 H 0.07 1.86 6.71 -51.93 -0.35 1.51 16 26 H 0.00 -0.05 7.56 -51.93 -0.39 -0.44 16 27 H 0.05 1.21 7.44 -51.93 -0.39 0.82 16 28 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.17 2.26 6.91 -52.48 -0.36 1.90 16 30 H 0.42 1.45 8.96 -34.48 -0.31 1.14 16 31 H 0.42 1.54 8.96 -34.48 -0.31 1.23 16 32 H 0.18 1.70 7.63 -52.49 -0.40 1.30 16 LS Contribution 308.80 15.07 4.65 4.65 Total: -1.00 -33.05 308.80 -6.76 -39.81 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: -1.99 Total: -2.42 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -1.08 Total: 4.21 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.56 Total: -53.51 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -1.98 Total: -26.38 kcal Atomic # 9 Polarization: -8.27 SS G_CDS: 0.07 Total: -8.20 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 27.04 SS G_CDS: -0.68 Total: 26.36 kcal Atomic # 17 Polarization: 0.69 SS G_CDS: -1.28 Total: -0.59 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.05 -6.76 -39.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165091975.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.595 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds